Snord87 (small nucleolar RNA, C/D box 87) - Rat Genome Database

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Gene: Snord87 (small nucleolar RNA, C/D box 87) Rattus norvegicus
Analyze
Symbol: Snord87
Name: small nucleolar RNA, C/D box 87
RGD ID: 41182145
Description: ASSOCIATED WITH Joubert syndrome 21 (ortholog); INTERACTS WITH (-)-alpha-phellandrene (ortholog); aflatoxin B1 (ortholog); alpha-phellandrene (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120103285; small nucleolar RNA SNORD87
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8514,080,356 - 14,080,440 (+)NCBIGRCr8
mRatBN7.259,297,489 - 9,297,573 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl59,297,489 - 9,297,573 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl58,979,349 - 8,979,433 (+)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map5q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord87
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8514,080,356 - 14,080,440 (+)NCBIGRCr8
mRatBN7.259,297,489 - 9,297,573 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl59,297,489 - 9,297,573 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl58,979,349 - 8,979,433 (+)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map5q11NCBI
SNORD87
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38866,922,474 - 66,922,549 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl866,922,467 - 66,922,555 (-)EnsemblGRCh38hg38GRCh38
GRCh37867,834,709 - 67,834,784 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36867,997,263 - 67,997,338 (-)NCBINCBI36Build 36hg18NCBI36
Celera863,828,203 - 63,828,278 (-)NCBICelera
Cytogenetic Map8q13.1NCBI
HuRef863,327,295 - 63,327,370 (-)NCBIHuRef
CHM1_1867,889,730 - 67,889,805 (-)NCBICHM1_1
T2T-CHM13v2.0867,348,953 - 67,349,028 (-)NCBIT2T-CHM13v2.0
Snord87
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39110,012,695 - 10,012,768 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl110,012,688 - 10,012,774 (-)EnsemblGRCm39 Ensembl
GRCm3819,942,470 - 9,942,543 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl19,942,463 - 9,942,549 (-)EnsemblGRCm38mm10GRCm38
MGSCv3719,932,551 - 9,932,624 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera19,916,497 - 9,916,570 (-)NCBICelera
Cytogenetic Map1A2NCBI
cM Map12.22NCBI
LOC119866814
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2916,778,243 - 16,778,331 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02916,542,896 - 16,542,984 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12916,575,119 - 16,575,207 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02916,674,978 - 16,675,066 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02916,931,323 - 16,931,411 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Snord87
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005505363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000088906
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl59,297,489 - 9,297,573 (+)Ensembl
RefSeq Acc Id: XR_005505363
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8514,080,356 - 14,080,440 (+)NCBI
mRatBN7.259,297,489 - 9,297,573 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-42201 BioCyc
Ensembl Genes ENSRNOG00000060290 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000088906 ENTREZGENE
NCBI Gene LOC120103285 ENTREZGENE
PhenoGen Snord87 PhenoGen
RatGTEx ENSRNOG00000060290 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-10 Snord87  small nucleolar RNA, C/D box 87  LOC120103285  small nucleolar RNA SNORD87  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-02-10 LOC120103285  small nucleolar RNA SNORD87  Snord87  small nucleolar RNA, C/D box 87  Data merged from RGD:15013215 737654 PROVISIONAL
2021-01-27 LOC120103285  small nucleolar RNA SNORD87      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord87  small nucleolar RNA, C/D box 87      Symbol and Name status set to provisional 45752 PROVISIONAL