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Gene: Sdcbp (syndecan binding protein) Rattus norvegicus
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Symbol: Sdcbp
Name: syndecan binding protein
Description: Exhibits several functions, including protein C-terminus binding activity; signaling receptor binding activity; and syndecan binding activity. Involved in presynapse assembly. Predicted to localize to several cellular components, including the extracellular exosome; interleukin-5 receptor complex; and nucleus. Orthologous to human SDCBP (syndecan binding protein); PARTICIPATES IN interleukin-5 signaling pathway; syndecan signaling pathway; INTERACTS WITH 3H-1,2-dithiole-3-thione; ammonium chloride; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: mda-9; syndecan-binding protein 1; syntenin; syntenin-1; TACIP18
Orthologs:
Homo sapiens (human) : SDCBP (syndecan binding protein)  HGNC  Alliance
Mus musculus (house mouse) : Sdcbp (syndecan binding protein)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sdcbp (syndecan binding protein)
Pan paniscus (bonobo/pygmy chimpanzee) : SDCBP (syndecan binding protein)
Canis lupus familiaris (dog) : SDCBP (syndecan binding protein)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sdcbp (syndecan binding protein)
Sus scrofa (pig) : SDCBP (syndecan binding protein)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0519,471,664 - 19,498,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl519,471,664 - 19,498,485 (+)Ensembl
Rnor_5.0524,256,110 - 24,283,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4519,822,440 - 19,849,223 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1519,822,439 - 19,849,220 (+)NCBI
Celera518,790,757 - 18,817,395 (+)NCBICelera
Cytogenetic Map5q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Sdcbp
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621497
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.