SDCBP (syndecan binding protein) - Rat Genome Database

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Gene: SDCBP (syndecan binding protein) Pan paniscus
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Symbol: SDCBP
Name: syndecan binding protein
RGD ID: 11982257
Description: ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); ephrin receptor binding (ortholog); frizzled binding (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of receptor internalization (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN interleukin-5 signaling pathway; syndecan signaling pathway; ASSOCIATED WITH osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular exosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: syntenin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1856,643,962 - 56,673,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl856,643,962 - 56,673,833 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0854,992,627 - 55,022,560 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SDCBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1856,643,962 - 56,673,834 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl856,643,962 - 56,673,833 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0854,992,627 - 55,022,560 (+)NCBIMhudiblu_PPA_v0panPan3
SDCBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl858,552,924 - 58,582,859 (+)EnsemblGRCh38hg38GRCh38
GRCh38858,553,261 - 58,582,860 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37859,465,820 - 59,495,417 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36859,628,282 - 59,657,973 (+)NCBINCBI36hg18NCBI36
Build 34859,628,281 - 59,657,972NCBI
Celera855,458,752 - 55,488,443 (+)NCBI
Cytogenetic Map8q12.1NCBI
HuRef854,952,903 - 54,982,593 (+)NCBIHuRef
CHM1_1859,517,611 - 59,547,302 (+)NCBICHM1_1
Sdcbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3946,365,654 - 6,396,122 (+)NCBIGRCm39mm39
GRCm39 Ensembl46,365,650 - 6,408,423 (+)Ensembl
GRCm3846,365,680 - 6,396,122 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl46,365,650 - 6,408,423 (+)EnsemblGRCm38mm10GRCm38
MGSCv3746,292,827 - 6,323,269 (+)NCBIGRCm37mm9NCBIm37
MGSCv3646,292,868 - 6,322,797 (+)NCBImm8
Celera46,283,969 - 6,314,409 (+)NCBICelera
Cytogenetic Map4A1NCBI
Sdcbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2519,473,499 - 19,517,188 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl519,489,961 - 19,527,572 (+)Ensembl
Rnor_6.0519,471,664 - 19,498,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl519,471,664 - 19,498,485 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0524,256,110 - 24,283,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4519,822,440 - 19,849,223 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1519,822,439 - 19,849,220 (+)NCBI
Celera518,790,757 - 18,817,395 (+)NCBICelera
Cytogenetic Map5q12NCBI
Sdcbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545417,089,232 - 17,113,484 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545417,093,930 - 17,113,491 (+)NCBIChiLan1.0ChiLan1.0
LOC482977
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1299,331,876 - 9,370,489 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha299,644,617 - 9,683,238 (+)NCBI
ROS_Cfam_1.0299,417,267 - 9,455,907 (+)NCBI
UMICH_Zoey_3.1299,415,389 - 9,453,988 (+)NCBI
UNSW_CanFamBas_1.0299,541,083 - 9,579,672 (+)NCBI
UU_Cfam_GSD_1.0299,820,349 - 9,859,247 (+)NCBI
LOC101960082
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530360,438,300 - 60,453,495 (+)NCBI
SpeTri2.0NW_00493649614,331,971 - 14,347,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SDCBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl474,295,922 - 74,341,085 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1474,295,941 - 74,357,720 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2481,090,105 - 81,122,727 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103236850
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1854,536,286 - 54,565,884 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603987,157,660 - 87,187,388 (-)NCBIVero_WHO_p1.0
Sdcbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474433,524,045 - 33,558,963 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000054881   ⟹   ENSPPAP00000032015
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl856,643,962 - 56,673,833 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054899   ⟹   ENSPPAP00000032033
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl856,652,700 - 56,672,702 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054901   ⟹   ENSPPAP00000032035
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl856,655,978 - 56,672,667 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054908   ⟹   ENSPPAP00000032042
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl856,655,993 - 56,672,702 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054921   ⟹   ENSPPAP00000032055
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl856,659,147 - 56,672,702 (+)Ensembl
RefSeq Acc Id: XM_003821978   ⟹   XP_003822026
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1856,643,962 - 56,673,834 (+)NCBI
Mhudiblu_PPA_v0854,992,627 - 55,022,560 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008975461   ⟹   XP_008973709
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1856,643,975 - 56,673,834 (+)NCBI
Mhudiblu_PPA_v0854,992,649 - 55,022,560 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008975462   ⟹   XP_008973710
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1856,643,975 - 56,673,834 (+)NCBI
Mhudiblu_PPA_v0854,992,627 - 55,022,560 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008975463   ⟹   XP_008973711
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1856,643,975 - 56,673,834 (+)NCBI
Mhudiblu_PPA_v0854,992,649 - 55,022,560 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034966122   ⟹   XP_034822013
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0854,999,951 - 55,022,560 (+)NCBI
RefSeq Acc Id: XM_034966123   ⟹   XP_034822014
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0854,999,951 - 55,022,560 (+)NCBI
RefSeq Acc Id: XM_034966124   ⟹   XP_034822015
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0854,999,951 - 55,022,560 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_003822026   ⟸   XM_003821978
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008973710   ⟸   XM_008975462
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008973709   ⟸   XM_008975461
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008973711   ⟸   XM_008975463
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_034822013   ⟸   XM_034966122
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034822015   ⟸   XM_034966124
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034822014   ⟸   XM_034966123
- Peptide Label: isoform X2
RefSeq Acc Id: ENSPPAP00000032035   ⟸   ENSPPAT00000054901
RefSeq Acc Id: ENSPPAP00000032042   ⟸   ENSPPAT00000054908
RefSeq Acc Id: ENSPPAP00000032055   ⟸   ENSPPAT00000054921
RefSeq Acc Id: ENSPPAP00000032015   ⟸   ENSPPAT00000054881
RefSeq Acc Id: ENSPPAP00000032033   ⟸   ENSPPAT00000054899


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038846 Ensembl, ENTREZGENE
Ensembl Protein ENSPPAP00000032015 ENTREZGENE
  ENSPPAP00000032033 ENTREZGENE
  ENSPPAP00000032042 ENTREZGENE
  ENSPPAP00000032055 ENTREZGENE
NCBI Gene SDCBP ENTREZGENE