Dnajb6-ps2 (DnaJ heat shock protein family (Hsp40) member B6, pseudogene 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Dnajb6-ps2 (DnaJ heat shock protein family (Hsp40) member B6, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Dnajb6-ps2
Name: DnaJ heat shock protein family (Hsp40) member B6, pseudogene 2
RGD ID: 1597763
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC685119; similar to DnaJ (Hsp40) homolog, subfamily B, member 6
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8521,676,439 - 21,677,937 (+)NCBIGRCr8
mRatBN7.2516,878,848 - 16,879,742 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0516,765,115 - 16,766,318 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0521,542,799 - 21,543,561 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4517,188,560 - 17,189,290 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera516,253,559 - 16,254,762 (+)NCBICelera
Cytogenetic Map5q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in Dnajb6-ps2
7 total Variants

1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat

1 to 10 of 14 rows





GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-42114 BioCyc
NCBI Gene 685119 ENTREZGENE
PhenoGen Dnajb6-ps2 PhenoGen


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Dnajb6-ps2  DnaJ heat shock protein family (Hsp40) member B6, pseudogene 2  LOC685119  similar to DnaJ (Hsp40) homolog, subfamily B, member 6  Symbol and Name Changed 1299863 APPROVED
2008-05-28 LOC685119  similar to DnaJ (Hsp40) homolog, subfamily B, member 6   LOC685119  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)  'predicted' is removed from gene name 2292626 APPROVED
2008-01-09 LOC685119  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)  LOC684220  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)  Data merged from RGD:1592725 1643240 APPROVED
2006-11-20 LOC685119  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684220  similar to DnaJ (Hsp40) homolog, subfamily B, member 6 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL