Mybl1 (MYB proto-oncogene like 1)

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Gene: Mybl1 (MYB proto-oncogene like 1) Rattus norvegicus

Analyze

Symbol:

Mybl1

Name:

MYB proto-oncogene like 1

RGD ID:

1306940

Description:

Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including male gamete generation; negative regulation of transposition; and piRNA biosynthetic process. Predicted to localize to nucleoplasm. Orthologous to human MYBL1 (MYB proto-oncogene like 1); PARTICIPATES IN interleukin-4 signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC297783; myb-related protein A; myeloblastosis oncogene-like 1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYBL1 (MYB proto-oncogene like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Mybl1 (myeloblastosis oncogene-like 1)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Mybl1 (MYB proto-oncogene like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MYBL1 (MYB proto-oncogene like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MYBL1 (MYB proto-oncogene like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mybl1 (MYB proto-oncogene like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MYBL1 (MYB proto-oncogene like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	MYBL1 (MYB proto-oncogene like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mybl1 (MYB proto-oncogene like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MYBL2 (MYB proto-oncogene like 2)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	MYBL1 (MYB proto-oncogene like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Mus musculus (house mouse):	Mybl1 (myeloblastosis oncogene-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	mybl1 (v-myb avian myeloblastosis viral oncogene homolog-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	BAS1	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Myb	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	9,582,905 - 9,618,179 (+)	NCBI
Rnor_6.0 Ensembl	5	9,279,970 - 9,315,114 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	9,279,756 - 9,315,112 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	14,079,863 - 14,115,190 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	9,136,980 - 9,170,799 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	9,137,235 - 9,172,224 (+)	NCBI
Celera	5	9,091,628 - 9,125,551 (+)	NCBI		Celera
Cytogenetic Map	5	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoid cystic carcinoma (ISO)

COVID-19 (ISO)

high grade glioma (ISO)

polycystic ovary syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(S)-amphetamine (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (EXP)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-acetamidofluorene (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

afimoxifene (ISO)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid (EXP)

arsenous acid (ISO)

azathioprine (ISO)

bazedoxifene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bromobenzene (EXP)

chloropicrin (ISO)

cisplatin (ISO)

clofibrate (ISO)

clomiphene (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dichloroacetic acid (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

Echimidine (EXP)

estrone (ISO)

ethyl methanesulfonate (ISO)

fenamidone (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

geraniol (ISO)

GW 4064 (ISO)

Heliotrine (EXP)

hexestrol (ISO)

indometacin (ISO)

Lasiocarpine (EXP)

lead diacetate (ISO)

lipopolysaccharide (ISO)

mestranol (ISO)

methyl methanesulfonate (ISO)

methylparaben (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

ochratoxin A (EXP)

paracetamol (ISO)

phenylephrine (EXP)

phenylmercury acetate (ISO)

phytoestrogen (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

quercetin (ISO)

raloxifene (ISO)

SB 431542 (ISO)

senecionine (EXP)

Senkirkine (EXP)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

male meiosis I (ISO)

mitotic cell cycle (IBA)

negative regulation of transposition (ISO)

piRNA biosynthetic process (ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

regulation of transcription, DNA-templated (IBA)

spermatogenesis (ISO)

Cellular Component

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

interleukin-4 signaling pathway (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4.	RGD automated data pipeline
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7987850	PMID:21750041	PMID:23523368	PMID:29848638

Genomics

Comparative Map Data

Mybl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	9,582,905 - 9,618,179 (+)	NCBI
Rnor_6.0 Ensembl	5	9,279,970 - 9,315,114 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	9,279,756 - 9,315,112 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	14,079,863 - 14,115,190 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	9,136,980 - 9,170,799 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	9,137,235 - 9,172,224 (+)	NCBI
Celera	5	9,091,628 - 9,125,551 (+)	NCBI		Celera
Cytogenetic Map	5	q11	NCBI

MYBL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	8	66,562,175 - 66,614,247 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	8	66,562,175 - 66,613,218 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	8	67,474,410 - 67,525,484 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	8	67,474,410 - 67,525,453 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	67,636,968 - 67,687,729 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	8	63,467,407 - 63,518,475 (-)	NCBI
Cytogenetic Map	8	q13.1	NCBI
HuRef	8	62,964,307 - 63,015,530 (-)	NCBI		HuRef
CHM1_1	8	67,529,290 - 67,580,347 (-)	NCBI		CHM1_1

Mybl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	9,737,632 - 9,770,664 (-)	NCBI	GRCm39		mm39
GRCm38	1	9,667,407 - 9,700,439 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	9,667,415 - 9,700,209 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	9,658,912 - 9,690,290 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	1	9,655,088 - 9,685,168 (-)	NCBI			mm8
Celera	1	9,643,076 - 9,674,452 (-)	NCBI		Celera
Cytogenetic Map	1	A2	NCBI
cM Map	1	2.08	NCBI

Mybl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955444	12,589,464 - 12,620,663 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955444	12,589,464 - 12,620,602 (+)	NCBI	ChiLan1.0	ChiLan1.0

MYBL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	8	64,771,278 - 64,811,519 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	64,771,278 - 64,811,960 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	8	63,105,379 - 63,156,421 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

MYBL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	29	16,157,821 - 16,192,808 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	29	16,155,867 - 16,192,814 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Mybl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936496	7,395,541 - 7,436,295 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYBL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	68,119,865 - 68,159,513 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	68,120,078 - 68,159,513 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	74,288,307 - 74,326,973 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MYBL1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	62,440,620 - 62,489,148 (-)	NCBI
ChlSab1.1 Ensembl	8	62,442,204 - 62,478,819 (-)	Ensembl

Mybl1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624744	24,736,813 - 24,775,427 (+)	NCBI

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	89432042	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	93273395	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	136640934	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	1525098	33001026	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	1525098	78720537	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	1666587	71552720	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	3251329	26252076	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	3251329	48722188	Rat
61462	Niddm10	Non-insulin dependent diabetes mellitus QTL 10	3.9	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	5	4525738	47978104	Rat
631827	Alc4	Alcohol consumption QTL 4	3.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	5	7875611	18592319	Rat
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	8632285	53632285	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	159
Count of miRNA genes:	105
Interacting mature miRNAs:	134
Transcripts:	ENSRNOT00000067977
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2								18	5	19
Low	1	41	56	40	19	40	7	7	56	30	22	11	7
Below cutoff		2	1	1		1	1	3					1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000067977 ⟹ ENSRNOP00000062710

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	9,279,970 - 9,315,114 (+)	Ensembl

RefSeq Acc Id:

NM_001106632 ⟹ NP_001100102

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	9,582,934 - 9,616,755 (+)	NCBI
Rnor_6.0	5	9,279,865 - 9,313,684 (+)	NCBI
Rnor_5.0	5	14,079,863 - 14,115,190 (+)	NCBI
RGSC_v3.4	5	9,136,980 - 9,170,799 (+)	RGD
Celera	5	9,091,628 - 9,125,551 (+)	RGD

Sequence:

show sequence

TGCGGGGAGAGGGCGGGGGTCGGCGCCCGTGACGGAGCCGCGCAGGGCCGGCAGCTCCAAGGCG
GAGGCGGAGGCGGCGGGAGGGGCGGGCGGAGGGCGGGAGCACGGCTCCTGACATGTCCAGGGCA
TCCCTGGCCGGGCCGGGCCGCGGCTAGGAGCAGCGGGTCTTGGTCCGCCCCTCTGTCCCTCAGT
CCCGCCTGGCCCTGACCTGTCGGGGCCTGCGTTCCGCTCTCTCGGCCACCTGAGGGAAGGAGCG
GGGTAAGCGGCGGGTGGGTCTCGGAGAGGGCGCACTCGCCCCAGGCTGGAGGAGGCTGACCCGC
GTCCCCGCCCAGCCCGCGCCTATGCGGTACTTGAAGGATGGCGAAGAGGTCGCGCAGTGAGGAT
GAGGACGATGACCTTCAGTATGCTGATCATGATTATGAAGTACCTCAACAAAAAGGACTGAAAA
AACTCTGGAACAGAGTAAAATGGACCAGAGATGAGGATGACAAGTTAAAGAAGTTGGTTGAACA
ACACGGAACTGATGATTGGACTCTAATTGCTAGTCATCTTCAAAATCGTTCTGATTTTCAGTGC
CAACATCGATGGCAGAAGGTTTTAAATCCAGAATTGATAAAGGGTCCTTGGACGAAGGAAGAAG
ATCAGAGGGTTATTGAATTAGTTCAGAAATATGGGCCAAAAAGGTGGTCTTTAATTGCAAAACA
TTTAAAAGGAAGAATAGGCAAGCAGTGCAGAGAAAGATGGCACAATCACCTGAACCCCGAGGTA
AAGAAGTCTTCTTGGACAGAGGAAGAAGACAGGATCATATACGAAGCGCACAAGCGGCTGGGAA
ACCGTTGGGCCGAGATTGCGAAGTTACTTCCTGGAAGGACTGATAATTCTATCAAAAATCATTG
GAATTCTACCATGAGAAGAAAAGTGGAGCAGGAGGGCTACTTACAAGACGGAATAAAATCAGAG
CGGTCTTCATCCAAACTTCAACACAAACCTTGTGCGACTATGGACCATTTGCAAACCCAGAATC
AGTTTTACATTCCTATCCCTGGTTATCAGTATGTGTCACCTGATGGCAATTGTGTTGAACATGT
CCAGACATCTGCCTTTATTCAGCAACCCTTTGTTGATGAAGATCCTGATAAAGAGAAAAAAATA
AAGGAGCTCGAGTTGCTTCTTATGTCAGCTGAGAATGAAGTTAGAAGAAAGAGGCTTCCACCTC
AACCTGGAAGCTTTTCTAGCTGGTCTGGTAGTTTCCTCATGGATGATAGTATGTCTAACACGCT
GAATAATCTTGAGGAGCACACTACTGAGTTTTATAGCATGGATGAAAATCAGACTGTTTCTGCC
CAGCAGAACTCACCCACAAAGTTTCTAGCTGTAGAAGCAAATGCTGTGCTGTCCTCTCTACAGA
CCATCCCAGAATTTGCAGAAACTCTAGAACTTATTGAATCGGATCCTGTAGCATGGAGTGATGT
TACCAGTTTTGATCTTTCTGATGCTGCTGCTTCTCCTGTCAAGTCTACTCCAGTTAAATTAATG
AGAATTCAGCATAATGAAGGAGCCATGGAATGTCAATTTAACGTCAGTCTTGTCCTTGAAGGGA
AAAAGAACAGTTGTAATGGTGGAGACAGTGAAGCTATTCCTTTAGCATCCCCAAATGTGGTCAA
GTTTAGCACTCCACCAACTATCCTCAGAAAGAAGAAAAGACTACGAGTGGGTCAGTCTGCAGGC
AGTGAGCTTGGTGAAGGCTCACTCAGTGAGGGCAATAACGCAGCCCTGAAGCACACACCAGTAA
AAACACTACCGTTTTCTCCTTCACAGTTCTTTAACACATGCCCTGGAAGTGAACAACTTAATAT
AGAAAACCCTTCCTTTACATCAACCCCAATTTGTGGACAGAAAGTTCTTATTACAACTCCTCTT
CAAAAGGAAGCGACCCCCAAAGATCAAAAAGAAAATGTAGGGTTTAGAACACCTACTATTAGAA
GATCGATACTGGGCACCACACCAAGAACTCCTACTCCTTTTAAGAATGCACTTGCTGCTCAGGA
AAAGAAATATGGACCTCTTAAAATTGTGTCCCAGCCACTTGCCTTCTTGGAAGAAGACATTCGA
GAGGTTTTAAAAGAAGAAACTGGAACAGATATATTCCTCAAAGAGGAAGATGAACCCGCTTACA
AAAGCTGCAAACAAGAGCACTCTGCATCTGTGAAGAAAGTCAGAAAGTCACTGGCCTTAGAGAG
CTGGGACAAAGAAGAACCGGGCACCCAGCTGCTAACTGAAGACATTTCAGACATGCAGTCAGAA
AATATTCTTACAACATCTTTATTAATGATACCATTATTGGAAATACATGACAATAGGTGCAACT
TGACTCCTGAAAAACAAGATATAAATTCAGCCAACAAAACATATACACTTACTAAAAAGAGACC
AAACCCTAACACTTGTAAAGCTGTCAAATTGGAAAAGAGTCTTCAGTCAAATTGTGAATGGGAA
ACAGTGGTATACGGGAAGACAGAAGACCAACTCATCATGACTGAACAAGCAAGAAGATACCTGA
GCACTTACACAGCTCCCAGCAGCACATCGAGAGCTCTGATACTCTAACTGTTACTGAAGCTGAT
GAAAGGCCCCACCCCCTACTGTGCTTATGCTAAATTAGGTTGCAATGAAATTTGTCTCAATTAA
TTCTTTTAAAGGTTTTAATACATCCCTAAAATGGTTCGCGGTTTTTTCTATATTGAACAGGCAA
AAACCTAATAAGCCACTTAACGTAAGGGGTAGGCAAATTTATTATAAATATATTTTTAAGAAAT
GAGAGTTTTAAAGCTTGTTTTTAAAGAACAAAGTGGGAAAATAAGGATGTTCATGGGTATTCCA
AAGTCAATTCTCACGTTAATTTCTTTCCAGGATATATGTCGCTACTTTCTCAAGGCCGTAGTCT
GTTATAAACAAGTTAGGTGTGCGTGGCCTCTGAAAGTCTGTGTTTAGGAAGCACAGAGGCTTTA
TGAAGTACTTTTGCATGTGTGCTGATTTACTTAGAGAAACACAGTGGGAAGGAGCCTCAAGGAA
GCTAGAAGTTGCACTACTAATTTTGGTATTTTTCAGAAACAATGAAATTAACTACAGTGTTAAG
GATATTTATTTGTGCATAGTACTAAAAAAGCATTGAAAAAAAGGCTTTTTCTTACTAGTAAAGA
GTCAGTATTTCTTCATAAGTCTCAGAAGAGCTGAGAATTTTGTTGAATGTATTGTACAGTATGT
AGGAGCAAGAAAACTTTGTAAATTGGAAAGATGTCTGTTTTTATAACTTATTTTCATTTTTAAA
GCTTAAATGTAGATATTTATATATACAGGGTGTCTAGAAGCCAGTGTTGTTTCTTGCCATTACA
GCTAACATAGTAAAGAATAACTTTGACTTTCAAGTATGAAATAGTTAAGTTATAGCTTCAAAGA
ATACAATATCTATACTGTATGTCACATCTACCTAAATATTGCACTATATCCTTTAAATCATGTT
GGTTATAAAGTAGTTCTAAAATGTACTAAATAATAATTTAATATTTTCTTTTTAAATTATATTG
GAGGGTCATATAAATTAATCTGGTGATTTGTATATGTGTTTGAAATTTTCATTTTGTTT

hide sequence

RefSeq Acc Id:

XM_006237749 ⟹ XP_006237811

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	9,582,905 - 9,618,179 (+)	NCBI
Rnor_6.0	5	9,279,756 - 9,315,112 (+)	NCBI
Rnor_5.0	5	14,079,863 - 14,115,190 (+)	NCBI

Sequence:

show sequence

GGGCCGCGTGCGCAGATTCAAACGGCGGCTCTTGAGGGAGGCTGGGCGCGAGATTCGGCGGTGC
GGACAAAACCCTGCAGGAGGCTGCGAGTGCTGCAGAGCTGCTCGCTGCGGGGAGAGGGCGGGGG
TCGGCGCCCGTGACGGAGCCGCGCAGGGCCGGCAGCTCCAAGGCGGAGGCGGAGGCGGCGGGAG
GGGCGGGCGGAGGGCGGGAGCACGGCTCCTGACATGTCCAGGGCATCCCTGGCCGGGCCGGGCC
GCGGCTAGGAGCAGCGGGTCTTGGTCCGCCCCTCTGTCCCTCAGTCCCGCCTGGCCCTGACCTG
TCGGGGCCTGCGTTCCGCTCTCTCGGCCACCTGAGGGAAGGAGCGGGGTAAGCGGCGGGTGGGT
CTCGGAGAGGGCGCACTCGCCCCAGGCTGGAGGAGGCTGACCCGCGTCCCCGCCCAGCCCGCGC
CTATGCGGTACTTGAAGGATGGCGAAGAGGTCGCGCAGTGAGGATGAGGACGATGACCTTCAGT
ATGCTGATCATGATTATGAAGTACCTCAACAAAAAGGACTGAAAAAACTCTGGAACAGAGTAAA
ATGGACCAGAGATGAGGATGACAAGTTAAAGAAGTTGGTTGAACAACACGGAACTGATGATTGG
ACTCTAATTGCTAGTCATCTTCAAAATCGTTCTGATTTTCAGTGCCAACATCGATGGCAGAAGG
TTTTAAATCCAGAATTGATAAAGGGTCCTTGGACGAAGGAAGAAGATCAGAGGGTTATTGAATT
AGTTCAGAAATATGGGCCAAAAAGGTGGTCTTTAATTGCAAAACATTTAAAAGGAAGAATAGGC
AAGCAGTGCAGAGAAAGATGGCACAATCACCTGAACCCCGAGGTAAAGAAGTCTTCTTGGACAG
AGGAAGAAGACAGGATCATATACGAAGCGCACAAGCGGCTGGGAAACCGTTGGGCCGAGATTGC
GAAGTTACTTCCTGGAAGGACTGATAATTCTATCAAAAATCATTGGAATTCTACCATGAGAAGA
AAAGTGGAGCAGGAGGGCTACTTACAAGACGGAATAAAATCAGAGCGGTCTTCATCCAAACTTC
AACACAAACCTTGTGCGACTATGGACCATTTGCAAACCCAGAATCAGTTTTACATTCCTGTTCA
GATCCCTGGTTATCAGTATGTGTCACCTGATGGCAATTGTGTTGAACATGTCCAGACATCTGCC
TTTATTCAGCAACCCTTTGTTGATGAAGATCCTGATAAAGAGAAAAAAATAAAGGAGCTCGAGT
TGCTTCTTATGTCAGCTGAGAATGAAGTTAGAAGAAAGAGGCTTCCACCTCAACCTGGAAGCTT
TTCTAGCTGGTCTGGTAGTTTCCTCATGGATGATAGTATGTCTAACACGCTGAATAATCTTGAG
GAGCACACTACTGAGTTTTATAGCATGGATGAAAATCAGACTGTTTCTGCCCAGCAGAACTCAC
CCACAAAGTTTCTAGCTGTAGAAGCAAATGCTGTGCTGTCCTCTCTACAGACCATCCCAGAATT
TGCAGAAACTCTAGAACTTATTGAATCGGATCCTGTAGCATGGAGTGATGTTACCAGTTTTGAT
CTTTCTGATGCTGCTGCTTCTCCTGTCAAGTCTACTCCAGTTAAATTAATGAGAATTCAGCATA
ATGAAGGAGCCATGGAATGTCAATTTAACGTCAGTCTTGTCCTTGAAGGGAAAAAGAACAGTTG
TAATGGTGGAGACAGTGAAGCTATTCCTTTAGCATCCCCAAATGTGGTCAAGTTTAGCACTCCA
CCAACTATCCTCAGAAAGAAGAAAAGACTACGAGTGGGTCAGTCTGCAGGCAGTGAGCTTGGTG
AAGGCTCACTCAGTGAGGGCAATAACGCAGCCCTGAAGCACACACCAGTAAAAACACTACCGTT
TTCTCCTTCACAGTTCTTTAACACATGCCCTGGAAGTGAACAACTTAATATAGAAAACCCTTCC
TTTACATCAACCCCAATTTGTGGACAGAAAGTTCTTATTACAACTCCTCTTCAAAAGGAAGCGA
CCCCCAAAGATCAAAAAGAAAATGTAGGGTTTAGAACACCTACTATTAGAAGATCGATACTGGG
CACCACACCAAGAACTCCTACTCCTTTTAAGAATGCACTTGCTGCTCAGGAAAAGAAATATGGA
CCTCTTAAAATTGTGTCCCAGCCACTTGCCTTCTTGGAAGAAGACATTCGAGAGGTTTTAAAAG
AAGAAACTGGAACAGATATATTCCTCAAAGAGGAAGATGAACCCGCTTACAAAAGCTGCAAACA
AGAGCACTCTGCATCTGTGAAGAAAGTCAGAAAGTCACTGGCCTTAGAGAGCTGGGACAAAGAA
GAACCGGGCACCCAGCTGCTAACTGAAGACATTTCAGACATGCAGTCAGAAAATATTCTTACAA
CATCTTTATTAATGATACCATTATTGGAAATACATGACAATAGGTGCAACTTGACTCCTGAAAA
ACAAGATATAAATTCAGCCAACAAAACATATACACTTACTAAAAAGAGACCAAACCCTAACACT
TGTAAAGCTGTCAAATTGGAAAAGAGTCTTCAGTCAAATTGTGAATGGGAAACAGTGGTATACG
GGAAGACAGAAGACCAACTCATCATGACTGAACAAGCAAGAAGATACCTGAGCACTTACACAGC
TCCCAGCAGCACATCGAGAGCTCTGATACTCTAACTGTTACTGAAGCTGATGAAAGGCCCCACC
CCCTACTGTGCTTATGCTAAATTAGGTTGCAATGAAATTTGTCTCAATTAATTCTTTTAAAGGT
TTTAATACATCCCTAAAATGGTTCGCGGTTTTTTCTATATTGAACAGGCAAAAACCTAATAAGC
CACTTAACGTAAGGGGTAGGCAAATTTATTATAAATATATTTTTAAGAAATGAGAGTTTTAAAG
CTTGTTTTTAAAGAACAAAGTGGGAAAATAAGGATGTTCATGGGTATTCCAAAGTCAATTCTCA
CGTTAATTTCTTTCCAGGATATATGTCGCTACTTTCTCAAGGCCGTAGTCTGTTATAAACAAGT
TAGGTGTGCGTGGCCTCTGAAAGTCTGTGTTTAGGAAGCACAGAGGCTTTATGAAGTACTTTTG
CATGTGTGCTGATTTACTTAGAGAAACACAGTGGGAAGGAGCCTCAAGGAAGCTAGAAGTTGCA
CTACTAATTTTGGTATTTTTCAGAAACAATGAAATTAACTACAGTGTTAAGGATATTTATTTGT
GCATAGTACTAAAAAAGCATTGAAAAAAAGGCTTTTTCTTACTAGTAAAGAGTCAGTATTTCTT
CATAAGTCTCAGAAGAGCTGAGAATTTTGTTGAATGTATTGTACAGTATGTAGGAGCAAGAAAA
CTTTGTAAATTGGAAAGATGTCTGTTTTTATAACTTATTTTCATTTTTAAAGCTTAAATGTAGA
TATTTATATATACAGGGTGTCTAGAAGCCAGTGTTGTTTCTTGCCATTACAGCTAACATAGTAA
AGAATAACTTTGACTTTCAAGTATGAAATAGTTAAGTTATAGCTTCAAAGAATACAATATCTAT
ACTGTATGTCACATCTACCTAAATATTGCACTATATCCTTTAAATCATGTTGGTTATAAAGTAG
TTCTAAAATGTACTAAATAATAATTTAATATTTTCTTTTTAAATTATATTGGAGGGTCATATAA
ATTAATCTGGTGATTTGTATATGTGTTTGAAATTTTCATTTTGTTTAAAAAACAATATGGTACC
TTGCTCCCTAAAACAGTCTGCACTTAGAAGTTTATTGTATTTACTCAATGTTTCAGAAGTAGAA
AATATTATCTTTTATTTATACAAATATTTTGTCCTTTTATAAATGTTTTGTGTTTCCAGGTTAC
AATAGTTGCTTCAGTTGCCTGTTTAGGTGTTTGCACTTACTTTATCTCTTTTTGAAAGAATGTC
TTTGCTTATGTGGTAGAGATTTATGTAATTTTTTGAGACGTATAATGGTGTGCTGTCAACCTAA
ACACTGACAGGCAGATAGAATTGTACACTGTAGTTTGAATTATTTATAATTGACACACTCTCTC
CCTCTCCACTCCTGAAGTATGCTGCTATAGAAAGTAGCAGAGTCGGCTTGCTGCTATGAGAGAT
GGAAAGAGCAACCACCACTTGCACTGTGTGAAAAGATAAGCAAATGATGGCCAGTTCTCAAGTT
AACTAATGGATTCAACGATTCCCAAGCAGGTTCTTAAAAGACCAAACACCACTGTGCCTCAAAA
CCAAACCAAACTGAACAGCTTAAGATTTTTTTAAAACTCTACTTATCTGTTAATAGAAATGGGA
CTACTGAATATTTTAATGCCTAGTTCTTCAACAGTAGACCTAAAGGGTTTTAAGCTTTAAATCC
AATTGCTAGTTTTTGCATACTATATGTTAGTGAGAAGTAAAGAATATGTGTGGTGGTACTAAGA
TTATGCCTCTTGATAACAAATAGGTAAAACAATTTGAATCTTCTTAGCATGTTAAATATGTTGA
TTTTTTTCTAATTAATGAACTTCTCACAGAAATTTTGCTTTGTAAAACCAATGATTGTGGAAAA
AAAATCATACTCTATCATTTCAGTTACTTTGGGGTAATAATAGCACATAATTCTTTTTTTTAAA
AAAAAATGTAGCCTTTAGCTGCATTGGATATAATAATCTCCAGTTGCCAAAGTAAAATATCTCA
GACACGCTACATATTTTAAAACATAATTTTTCTTGAGCATTAAGTTAGCACAAATGTTAATACA
TTGTCCATAAGCCTGGGCTTATGGGACATAGGACATATTTGGGTTGGTATTGGTTGAATCCTCC
AGTTAACTGCTTTGTTGCTTTTTGCAAGATTTGTAATCATAAACATGTTAGGCATCTTAAGTCA
TCTTTTTTTACTGTTCACTTATATTCTTCAGTTTTCTGAAGATGCCAAGCATACAGGTAGCAGC
CATCCGTGCATGGAAACTGACTTCACACATACCAATACTGCATTCTGTTGTAAGGTTTTCACAT
TAATACAGCAATTACACTGACTAAATTGAGTTTTTTAATATATAAAAAAAAAACTTTGCATTGT
AAGAGAATCTTGCAGACAATGTTGAAATCTATTAACATCCAAATAAAAGCATCTGTGTACAAGC
TG

hide sequence

RefSeq Acc Id:

XM_006237750 ⟹ XP_006237812

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	9,280,248 - 9,315,112 (+)	NCBI
Rnor_5.0	5	14,079,863 - 14,115,190 (+)	NCBI

Sequence:

show sequence

GCCATCCCCTCGGCCCCGGCCTAGCGGCCCTGTCTCGGCTCTTGCTCTCTGTCCTTTCCTGCTG
GTCCCCATTCAGGCCCTCTCGGGCCTGGGCATAGGTTTTTCTATTCGGTGTCCCACACCCGATT
CGGCCGCGCTGGCCGGAGCGCATCCATCATTATTAGACTCCATCATTATTAGACTGCTGTATGG
AGGACTCTAACAAATGCTCAGGTTGCTGCTTTGACGGACTCTCCCACAGCTCACGCCCAGACTC
CTAACTTCTCACAGCCACTTACAGGGAGGTTTCTTGCCAAGTAAGTTTGTGCACTGCCAGGGGA
TATGCCACGCCAGGGGAAGTAGTTGTGTTTGCCTGGATGATTTGAAGTGGGGTTTTCTCCTCTG
ACTTACGGTGCCAAATCAAAATCCTCCTTTGGATCTCCATGACAAACAAACCTGGGCGGACATT
TCTGTGAAATCTTGAGAAGGGAACCTGTTAAATCTCCCATGTACACACTGCTGTTCTGAGATTT
TTTCCCCCTTATTATCTTATGAGGACATTGTTACGTTGTTACCATCGAGTAAACTTGATCCTAA
ACCAATGTGTTTGAGTTACTTTGTATCTCAAGTATTCATGTTTGATTCTGATTGTATCTGTGTT
GTATTAAGTAGGACACAATGTTATTGTTGTTGTTGAAAGATTTGCTTTTGTTGAAAGATGTGTA
TGCACCTAACTTTTATTTTATGCTATTCTAATAGCTACTCCTAAATTGTGTAGCATAATCGGAT
GACAAAAATCTACTGTCTGGATTTTCAGTTTTCTCAGTAATAAGGAAACCTGAAAAGCATTTGG
CAGAATTTCCAAATACTTTCATTTATCTAGAAACATAGCCTCAAAATCTTAAGAGTTTTATTTC
CTGAGCTGAAATTTAGTACTGGGAGTCATCCAATGCAGATTTTGATTTAAAATAACTATGCATA
GAATACATGGCTTTATTAATTTATTAAGCATCTTCTGTATGTAGGTTGGTTCTGCAGCTATCAA
CATAAATTTAGTTATGACATAATTACTTTATGTGTAGTGGCTGCAGAATAGATTGAACATTGAA
GTGGAAAAAGTGTGCATGTGTGCACACAGGCACCCTATCTTGGTCCTGTTATCATTTTGGATTA
GGTAGTTGTAGGGTTTTTTAGCAGCACCTTTGTCTCTACTCAGTAGAAGACAGTAGCCCTTTTT
CCTACAGTCGGGACAACCAAAACTGTCTACAGACGGTGGCACATATCTTTGGGGGGATGGAAAC
AGGACCACACAGTGAGGATGAGGACGATGACCTTCAGTATGCTGATCATGATTATGAAGTACCT
CAACAAAAAGGACTGAAAAAACTCTGGAACAGAGTAAAATGGACCAGAGATGAGGATGACAAGT
TAAAGAAGTTGGTTGAACAACACGGAACTGATGATTGGACTCTAATTGCTAGTCATCTTCAAAA
TCGTTCTGATTTTCAGTGCCAACATCGATGGCAGAAGGTTTTAAATCCAGAATTGATAAAGGGT
CCTTGGACGAAGGAAGAAGATCAGAGGGTTATTGAATTAGTTCAGAAATATGGGCCAAAAAGGT
GGTCTTTAATTGCAAAACATTTAAAAGGAAGAATAGGCAAGCAGTGCAGAGAAAGATGGCACAA
TCACCTGAACCCCGAGGTAAAGAAGTCTTCTTGGACAGAGGAAGAAGACAGGATCATATACGAA
GCGCACAAGCGGCTGGGAAACCGTTGGGCCGAGATTGCGAAGTTACTTCCTGGAAGGACTGATA
ATTCTATCAAAAATCATTGGAATTCTACCATGAGAAGAAAAGTGGAGCAGGAGGGCTACTTACA
AGACGGAATAAAATCAGAGCGGTCTTCATCCAAACTTCAACACAAACCTTGTGCGACTATGGAC
CATTTGCAAACCCAGAATCAGTTTTACATTCCTGTTCAGATCCCTGGTTATCAGTATGTGTCAC
CTGATGGCAATTGTGTTGAACATGTCCAGACATCTGCCTTTATTCAGCAACCCTTTGTTGATGA
AGATCCTGATAAAGAGAAAAAAATAAAGGAGCTCGAGTTGCTTCTTATGTCAGCTGAGAATGAA
GTTAGAAGAAAGAGGCTTCCACCTCAACCTGGAAGCTTTTCTAGCTGGTCTGGTAGTTTCCTCA
TGGATGATAGTATGTCTAACACGCTGAATAATCTTGAGGAGCACACTACTGAGTTTTATAGCAT
GGATGAAAATCAGACTGTTTCTGCCCAGCAGAACTCACCCACAAAGTTTCTAGCTGTAGAAGCA
AATGCTGTGCTGTCCTCTCTACAGACCATCCCAGAATTTGCAGAAACTCTAGAACTTATTGAAT
CGGATCCTGTAGCATGGAGTGATGTTACCAGTTTTGATCTTTCTGATGCTGCTGCTTCTCCTGT
CAAGTCTACTCCAGTTAAATTAATGAGAATTCAGCATAATGAAGGAGCCATGGAATGTCAATTT
AACGTCAGTCTTGTCCTTGAAGGGAAAAAGAACAGTTGTAATGGTGGAGACAGTGAAGCTATTC
CTTTAGCATCCCCAAATGTGGTCAAGTTTAGCACTCCACCAACTATCCTCAGAAAGAAGAAAAG
ACTACGAGTGGGTCAGTCTGCAGGCAGTGAGCTTGGTGAAGGCTCACTCAGTGAGGGCAATAAC
GCAGCCCTGAAGCACACACCAGTAAAAACACTACCGTTTTCTCCTTCACAGTTCTTTAACACAT
GCCCTGGAAGTGAACAACTTAATATAGAAAACCCTTCCTTTACATCAACCCCAATTTGTGGACA
GAAAGTTCTTATTACAACTCCTCTTCAAAAGGAAGCGACCCCCAAAGATCAAAAAGAAAATGTA
GGGTTTAGAACACCTACTATTAGAAGATCGATACTGGGCACCACACCAAGAACTCCTACTCCTT
TTAAGAATGCACTTGCTGCTCAGGAAAAGAAATATGGACCTCTTAAAATTGTGTCCCAGCCACT
TGCCTTCTTGGAAGAAGACATTCGAGAGGTTTTAAAAGAAGAAACTGGAACAGATATATTCCTC
AAAGAGGAAGATGAACCCGCTTACAAAAGCTGCAAACAAGAGCACTCTGCATCTGTGAAGAAAG
TCAGAAAGTCACTGGCCTTAGAGAGCTGGGACAAAGAAGAACCGGGCACCCAGCTGCTAACTGA
AGACATTTCAGACATGCAGTCAGAAAATATTCTTACAACATCTTTATTAATGATACCATTATTG
GAAATACATGACAATAGGTGCAACTTGACTCCTGAAAAACAAGATATAAATTCAGCCAACAAAA
CATATACACTTACTAAAAAGAGACCAAACCCTAACACTTGTAAAGCTGTCAAATTGGAAAAGAG
TCTTCAGTCAAATTGTGAATGGGAAACAGTGGTATACGGGAAGACAGAAGACCAACTCATCATG
ACTGAACAAGCAAGAAGATACCTGAGCACTTACACAGCTCCCAGCAGCACATCGAGAGCTCTGA
TACTCTAACTGTTACTGAAGCTGATGAAAGGCCCCACCCCCTACTGTGCTTATGCTAAATTAGG
TTGCAATGAAATTTGTCTCAATTAATTCTTTTAAAGGTTTTAATACATCCCTAAAATGGTTCGC
GGTTTTTTCTATATTGAACAGGCAAAAACCTAATAAGCCACTTAACGTAAGGGGTAGGCAAATT
TATTATAAATATATTTTTAAGAAATGAGAGTTTTAAAGCTTGTTTTTAAAGAACAAAGTGGGAA
AATAAGGATGTTCATGGGTATTCCAAAGTCAATTCTCACGTTAATTTCTTTCCAGGATATATGT
CGCTACTTTCTCAAGGCCGTAGTCTGTTATAAACAAGTTAGGTGTGCGTGGCCTCTGAAAGTCT
GTGTTTAGGAAGCACAGAGGCTTTATGAAGTACTTTTGCATGTGTGCTGATTTACTTAGAGAAA
CACAGTGGGAAGGAGCCTCAAGGAAGCTAGAAGTTGCACTACTAATTTTGGTATTTTTCAGAAA
CAATGAAATTAACTACAGTGTTAAGGATATTTATTTGTGCATAGTACTAAAAAAGCATTGAAAA
AAAGGCTTTTTCTTACTAGTAAAGAGTCAGTATTTCTTCATAAGTCTCAGAAGAGCTGAGAATT
TTGTTGAATGTATTGTACAGTATGTAGGAGCAAGAAAACTTTGTAAATTGGAAAGATGTCTGTT
TTTATAACTTATTTTCATTTTTAAAGCTTAAATGTAGATATTTATATATACAGGGTGTCTAGAA
GCCAGTGTTGTTTCTTGCCATTACAGCTAACATAGTAAAGAATAACTTTGACTTTCAAGTATGA
AATAGTTAAGTTATAGCTTCAAAGAATACAATATCTATACTGTATGTCACATCTACCTAAATAT
TGCACTATATCCTTTAAATCATGTTGGTTATAAAGTAGTTCTAAAATGTACTAAATAATAATTT
AATATTTTCTTTTTAAATTATATTGGAGGGTCATATAAATTAATCTGGTGATTTGTATATGTGT
TTGAAATTTTCATTTTGTTTAAAAAACAATATGGTACCTTGCTCCCTAAAACAGTCTGCACTTA
GAAGTTTATTGTATTTACTCAATGTTTCAGAAGTAGAAAATATTATCTTTTATTTATACAAATA
TTTTGTCCTTTTATAAATGTTTTGTGTTTCCAGGTTACAATAGTTGCTTCAGTTGCCTGTTTAG
GTGTTTGCACTTACTTTATCTCTTTTTGAAAGAATGTCTTTGCTTATGTGGTAGAGATTTATGT
AATTTTTTGAGACGTATAATGGTGTGCTGTCAACCTAAACACTGACAGGCAGATAGAATTGTAC
ACTGTAGTTTGAATTATTTATAATTGACACACTCTCTCCCTCTCCACTCCTGAAGTATGCTGCT
ATAGAAAGTAGCAGAGTCGGCTTGCTGCTATGAGAGATGGAAAGAGCAACCACCACTTGCACTG
TGTGAAAAGATAAGCAAATGATGGCCAGTTCTCAAGTTAACTAATGGATTCAACGATTCCCAAG
CAGGTTCTTAAAAGACCAAACACCACTGTGCCTCAAAACCAAACCAAACTGAACAGCTTAAGAT
TTTTTTAAAACTCTACTTATCTGTTAATAGAAATGGGACTACTGAATATTTTAATGCCTAGTTC
TTCAACAGTAGACCTAAAGGGTTTTAAGCTTTAAATCCAATTGCTAGTTTTTGCATACTATATG
TTAGTGAGAAGTAAAGAATATGTGTGGTGGTACTAAGATTATGCCTCTTGATAACAAATAGGTA
AAACAATTTGAATCTTCTTAGCATGTTAAATATGTTGATTTTTTTCTAATTAATGAACTTCTCA
CAGAAATTTTGCTTTGTAAAACCAATGATTGTGGAAAAAAAATCATACTCTATCATTTCAGTTA
CTTTGGGGTAATAATAGCACATAATTCTTTTTTTTAAAAAAAAATGTAGCCTTTAGCTGCATTG
GATATAATAATCTCCAGTTGCCAAAGTAAAATATCTCAGACACGCTACATATTTTAAAACATAA
TTTTTCTTGAGCATTAAGTTAGCACAAATGTTAATACATTGTCCATAAGCCTGGGCTTATGGGA
CATAGGACATATTTGGGTTGGTATTGGTTGAATCCTCCAGTTAACTGCTTTGTTGCTTTTTGCA
AGATTTGTAATCATAAACATGTTAGGCATCTTAAGTCATCTTTTTTTACTGTTCACTTATATTC
TTCAGTTTTCTGAAGATGCCAAGCATACAGGTAGCAGCCATCCGTGCATGGAAACTGACTTCAC
ACATACCAATACTGCATTCTGTTGTAAGGTTTTCACATTAATACAGCAATTACACTGACTAAAT
TGAGTTTTTTAATATATAAAAAAAAAACTTTGCATTGTAAGAGAATCTTGCAGACAATGTTGAA
ATCTATTAACATCCAAATAAAAGCATCTGTGTACAAGCTG

hide sequence

RefSeq Acc Id:

XM_006237751 ⟹ XP_006237813

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	9,279,756 - 9,315,112 (+)	NCBI
Rnor_5.0	5	14,079,863 - 14,115,190 (+)	NCBI

Sequence:

show sequence

GGGCCGCGTGCGCAGATTCAAACGGCGGCTCTTGAGGGAGGCTGGGCGCGAGATTCGGCGGTGC
GGACAAAACCCTGCAGGAGGCTGCGAGTGCTGCAGAGCTGCTCGCTGCGGGGAGAGGGCGGGGG
TCGGCGCCCGTGACGGAGCCGCGCAGGGCCGGCAGCTCCAAGGCGGAGGCGGAGGCGGCGGGAG
GGGCGGGCGGAGGGCGGGAGCACGGCTCCTGACATGTCCAGGGCATCCCTGGCCGGGCCGGGCC
GCGGCTAGGAGCAGCGGGTCTTGGTCCGCCCCTCTGTCCCTCAGTCCCGCCTGGCCCTGACCTG
TCGGGGCCTGCGTTCCGCTCTCTCGGCCACCTGAGGGAAGGAGCGGGGTAAGCGGCGGGTGGGT
CTCGGAGAGGGCGCACTCGCCCCAGGCTGGAGGAGGCTGACCCGCGTCCCCGCCCAGCCCGCGC
CTATGCGGTACTTGAAGGATGGCGAAGAGGTCGCGCAGTGAGGATGAGGACGATGACCTTCAGT
ATGCTGATCATGATTATGAAGTACCTCAACAAAAAGGACTGAAAAAACTCTGGAACAGAGTAAA
ATGGACCAGAGATGAGGATGACAAGTTAAAGAAGTTGGTTGAACAACACGGAACTGATGATTGG
ACTCTAATTGCTAGTCATCTTCAAAATCGTTCTGATTTTCAGTGCCAACATCGATGGCAGAAGG
TTTTAAATCCAGAATTGATAAAGGGTCCTTGGACGAAGGAAGAAGATCAGAGGGTTATTGAATT
AGTTCAGAAATATGGGCCAAAAAGGTGGTCTTTAATTGCAAAACATTTAAAAGGAAGAATAGGC
AAGCAGTGCAGAGAAAGATGGCACAATCACCTGAACCCCGAGGTAAAGAAGTCTTCTTGGACAG
AGGAAGAAGACAGGATCATATACGAAGCGCACAAGCGGCTGGGAAACCGTTGGGCCGAGATTGC
GAAGTTACTTCCTGGAAGGACTGATAATTCTATCAAAAATCATTGGAATTCTACCATGAGAAGA
AAAGTGGAGCAGGAGGGCTACTTACAAGACGGAATAAAATCAGAGCGGTCTTCATCCAAACTTC
AACACAAACCTTGTGCGACTATGGACCATTTGCAAACCCAGAATCAGTTTTACATTCCTGTTCA
GATCCCTGGTTATCAGTATGTGTCACCTGATGGCAATTGTGTTGAACATGTCCAGACATCTGCC
TTTATTCAGCAACCTGGAAGCTTTTCTAGCTGGTCTGGTAGTTTCCTCATGGATGATAGTATGT
CTAACACGCTGAATAATCTTGAGGAGCACACTACTGAGTTTTATAGCATGGATGAAAATCAGAC
TGTTTCTGCCCAGCAGAACTCACCCACAAAGTTTCTAGCTGTAGAAGCAAATGCTGTGCTGTCC
TCTCTACAGACCATCCCAGAATTTGCAGAAACTCTAGAACTTATTGAATCGGATCCTGTAGCAT
GGAGTGATGTTACCAGTTTTGATCTTTCTGATGCTGCTGCTTCTCCTGTCAAGTCTACTCCAGT
TAAATTAATGAGAATTCAGCATAATGAAGGAGCCATGGAATGTCAATTTAACGTCAGTCTTGTC
CTTGAAGGGAAAAAGAACAGTTGTAATGGTGGAGACAGTGAAGCTATTCCTTTAGCATCCCCAA
ATGTGGTCAAGTTTAGCACTCCACCAACTATCCTCAGAAAGAAGAAAAGACTACGAGTGGGTCA
GTCTGCAGGCAGTGAGCTTGGTGAAGGCTCACTCAGTGAGGGCAATAACGCAGCCCTGAAGCAC
ACACCAGTAAAAACACTACCGTTTTCTCCTTCACAGTTCTTTAACACATGCCCTGGAAGTGAAC
AACTTAATATAGAAAACCCTTCCTTTACATCAACCCCAATTTGTGGACAGAAAGTTCTTATTAC
AACTCCTCTTCAAAAGGAAGCGACCCCCAAAGATCAAAAAGAAAATGTAGGGTTTAGAACACCT
ACTATTAGAAGATCGATACTGGGCACCACACCAAGAACTCCTACTCCTTTTAAGAATGCACTTG
CTGCTCAGGAAAAGAAATATGGACCTCTTAAAATTGTGTCCCAGCCACTTGCCTTCTTGGAAGA
AGACATTCGAGAGGTTTTAAAAGAAGAAACTGGAACAGATATATTCCTCAAAGAGGAAGATGAA
CCCGCTTACAAAAGCTGCAAACAAGAGCACTCTGCATCTGTGAAGAAAGTCAGAAAGTCACTGG
CCTTAGAGAGCTGGGACAAAGAAGAACCGGGCACCCAGCTGCTAACTGAAGACATTTCAGACAT
GCAGTCAGAAAATATTCTTACAACATCTTTATTAATGATACCATTATTGGAAATACATGACAAT
AGGTGCAACTTGACTCCTGAAAAACAAGATATAAATTCAGCCAACAAAACATATACACTTACTA
AAAAGAGACCAAACCCTAACACTTGTAAAGCTGTCAAATTGGAAAAGAGTCTTCAGTCAAATTG
TGAATGGGAAACAGTGGTATACGGGAAGACAGAAGACCAACTCATCATGACTGAACAAGCAAGA
AGATACCTGAGCACTTACACAGCTCCCAGCAGCACATCGAGAGCTCTGATACTCTAACTGTTAC
TGAAGCTGATGAAAGGCCCCACCCCCTACTGTGCTTATGCTAAATTAGGTTGCAATGAAATTTG
TCTCAATTAATTCTTTTAAAGGTTTTAATACATCCCTAAAATGGTTCGCGGTTTTTTCTATATT
GAACAGGCAAAAACCTAATAAGCCACTTAACGTAAGGGGTAGGCAAATTTATTATAAATATATT
TTTAAGAAATGAGAGTTTTAAAGCTTGTTTTTAAAGAACAAAGTGGGAAAATAAGGATGTTCAT
GGGTATTCCAAAGTCAATTCTCACGTTAATTTCTTTCCAGGATATATGTCGCTACTTTCTCAAG
GCCGTAGTCTGTTATAAACAAGTTAGGTGTGCGTGGCCTCTGAAAGTCTGTGTTTAGGAAGCAC
AGAGGCTTTATGAAGTACTTTTGCATGTGTGCTGATTTACTTAGAGAAACACAGTGGGAAGGAG
CCTCAAGGAAGCTAGAAGTTGCACTACTAATTTTGGTATTTTTCAGAAACAATGAAATTAACTA
CAGTGTTAAGGATATTTATTTGTGCATAGTACTAAAAAAGCATTGAAAAAAAGGCTTTTTCTTA
CTAGTAAAGAGTCAGTATTTCTTCATAAGTCTCAGAAGAGCTGAGAATTTTGTTGAATGTATTG
TACAGTATGTAGGAGCAAGAAAACTTTGTAAATTGGAAAGATGTCTGTTTTTATAACTTATTTT
CATTTTTAAAGCTTAAATGTAGATATTTATATATACAGGGTGTCTAGAAGCCAGTGTTGTTTCT
TGCCATTACAGCTAACATAGTAAAGAATAACTTTGACTTTCAAGTATGAAATAGTTAAGTTATA
GCTTCAAAGAATACAATATCTATACTGTATGTCACATCTACCTAAATATTGCACTATATCCTTT
AAATCATGTTGGTTATAAAGTAGTTCTAAAATGTACTAAATAATAATTTAATATTTTCTTTTTA
AATTATATTGGAGGGTCATATAAATTAATCTGGTGATTTGTATATGTGTTTGAAATTTTCATTT
TGTTTAAAAAACAATATGGTACCTTGCTCCCTAAAACAGTCTGCACTTAGAAGTTTATTGTATT
TACTCAATGTTTCAGAAGTAGAAAATATTATCTTTTATTTATACAAATATTTTGTCCTTTTATA
AATGTTTTGTGTTTCCAGGTTACAATAGTTGCTTCAGTTGCCTGTTTAGGTGTTTGCACTTACT
TTATCTCTTTTTGAAAGAATGTCTTTGCTTATGTGGTAGAGATTTATGTAATTTTTTGAGACGT
ATAATGGTGTGCTGTCAACCTAAACACTGACAGGCAGATAGAATTGTACACTGTAGTTTGAATT
ATTTATAATTGACACACTCTCTCCCTCTCCACTCCTGAAGTATGCTGCTATAGAAAGTAGCAGA
GTCGGCTTGCTGCTATGAGAGATGGAAAGAGCAACCACCACTTGCACTGTGTGAAAAGATAAGC
AAATGATGGCCAGTTCTCAAGTTAACTAATGGATTCAACGATTCCCAAGCAGGTTCTTAAAAGA
CCAAACACCACTGTGCCTCAAAACCAAACCAAACTGAACAGCTTAAGATTTTTTTAAAACTCTA
CTTATCTGTTAATAGAAATGGGACTACTGAATATTTTAATGCCTAGTTCTTCAACAGTAGACCT
AAAGGGTTTTAAGCTTTAAATCCAATTGCTAGTTTTTGCATACTATATGTTAGTGAGAAGTAAA
GAATATGTGTGGTGGTACTAAGATTATGCCTCTTGATAACAAATAGGTAAAACAATTTGAATCT
TCTTAGCATGTTAAATATGTTGATTTTTTTCTAATTAATGAACTTCTCACAGAAATTTTGCTTT
GTAAAACCAATGATTGTGGAAAAAAAATCATACTCTATCATTTCAGTTACTTTGGGGTAATAAT
AGCACATAATTCTTTTTTTTAAAAAAAAATGTAGCCTTTAGCTGCATTGGATATAATAATCTCC
AGTTGCCAAAGTAAAATATCTCAGACACGCTACATATTTTAAAACATAATTTTTCTTGAGCATT
AAGTTAGCACAAATGTTAATACATTGTCCATAAGCCTGGGCTTATGGGACATAGGACATATTTG
GGTTGGTATTGGTTGAATCCTCCAGTTAACTGCTTTGTTGCTTTTTGCAAGATTTGTAATCATA
AACATGTTAGGCATCTTAAGTCATCTTTTTTTACTGTTCACTTATATTCTTCAGTTTTCTGAAG
ATGCCAAGCATACAGGTAGCAGCCATCCGTGCATGGAAACTGACTTCACACATACCAATACTGC
ATTCTGTTGTAAGGTTTTCACATTAATACAGCAATTACACTGACTAAATTGAGTTTTTTAATAT
ATAAAAAAAAAACTTTGCATTGTAAGAGAATCTTGCAGACAATGTTGAAATCTATTAACATCCA
AATAAAAGCATCTGTGTACAAGCTG

hide sequence

RefSeq Acc Id:

XM_006237752 ⟹ XP_006237814

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	9,582,905 - 9,618,179 (+)	NCBI
Rnor_6.0	5	9,279,756 - 9,315,112 (+)	NCBI
Rnor_5.0	5	14,079,863 - 14,115,190 (+)	NCBI

Sequence:

show sequence

GGGCCGCGTGCGCAGATTCAAACGGCGGCTCTTGAGGGAGGCTGGGCGCGAGATTCGGCGGTGC
GGACAAAACCCTGCAGGAGGCTGCGAGTGCTGCAGAGCTGCTCGCTGCGGGGAGAGGGCGGGGG
TCGGCGCCCGTGACGGAGCCGCGCAGGGCCGGCAGCTCCAAGGCGGAGGCGGAGGCGGCGGGAG
GGGCGGGCGGAGGGCGGGAGCACGGCTCCTGACATGTCCAGGGCATCCCTGGCCGGGCCGGGCC
GCGGCTAGGAGCAGCGGGTCTTGGTCCGCCCCTCTGTCCCTCAGTCCCGCCTGGCCCTGACCTG
TCGGGGCCTGCGTTCCGCTCTCTCGGCCACCTGAGGGAAGGAGCGGGGTAAGCGGCGGGTGGGT
CTCGGAGAGGGCGCACTCGCCCCAGGCTGGAGGAGGCTGACCCGCGTCCCCGCCCAGCCCGCGC
CTATGCGGTACTTGAAGGATGGCGAAGAGGTCGCGCAGTGAGGATGAGGACGATGACCTTCAGT
ATGCTGATCATGATTATGAAGTACCTCAACAAAAAGGACTGAAAAAACTCTGGAACAGAGTAAA
ATGGACCAGAGATGAGGATGACAAGTTAAAGAAGTTGGTTGAACAACACGGAACTGATGATTGG
ACTCTAATTGCTAGTCATCTTCAAAATCGTTCTGATTTTCAGTGCCAACATCGATGGCAGAAGG
TTTTAAATCCAGAATTGATAAAGGGTCCTTGGACGAAGGAAGAAGATCAGAGGGTTATTGAATT
AGTTCAGAAATATGGGCCAAAAAGGTGGTCTTTAATTGCAAAACATTTAAAAGGAAGAATAGGC
AAGCAGTGCAGAGAAAGATGGCACAATCACCTGAACCCCGAGGTAAAGAAGTCTTCTTGGACAG
AGGAAGAAGACAGGATCATATACGAAGCGCACAAGCGGCTGGGAAACCGTTGGGCCGAGATTGC
GAAGTTACTTCCTGGAAGGACTGATAATTCTATCAAAAATCATTGGAATTCTACCATGAGAAGA
AAAGTGGAGCAGGAGGGCTACTTACAAGACGGAATAAAATCAGAGCGGTCTTCATCCAAACTTC
AACACAAACCTTGTGCGACTATGGACCATTTGCAAACCCAGAATCAGTTTTACATTCCTGTTCA
GATCCCTGGTTATCAGTATGTGTCACCTGATGGCAATTGTGTTGAACATGTCCAGACATCTGCC
TTTATTCAGCAACCCTTTGTTGATGAAGATCCTGATAAAGAGAAAAAAATAAAGGAGCTCGAGT
TGCTTCTTATGTCAGCTGAGAATGAAGTTAGAAGAAAGAGGCTTCCACCTCAACCTGGAAGCTT
TTCTAGCTGGTCTGGTAGTTTCCTCATGGATGATAGTATGTCTAACACGCTGAATAATCTTGAG
GAGCACACTACTGAGTTTTATAGCATGGATGAAAATCAGACTGTTTCTGCCCAGCAGAACTCAC
CCACAAAGTTTCTAGCTGTAGAAGCAAATGCTGTGCTGTCCTCTCTACAGACCATCCCAGAATT
TGCAGAAACTCTAGAACTTATTGAATCGGATCCTGTAGCATGGAGTGATGTTACCAGTTTTGAT
CTTTCTGATGCTGCTGCTTCTCCTGTCAAGTCTACTCCAGTTAAATTAATGAGAATTCAGCATA
ATGAAGGAGCCATGGAATGTCAATTTAACGTCAGTCTTGTCCTTGAAGGGAAAAAGAACAGTTG
TAATGGTGGAGACAGTGAAGCTATTCCTTTAGCATCCCCAAATGTGGTCAAGTTTAGCACTCCA
CCAACTATCCTCAGAAAGAAGAAAAGACTACGAGTGGGTCAGTCTGCAGGCAGTGAGCTTGGTG
AAGGCTCACTCAGTGAGGGCAATAACGCAGCCCTGAAGCACACACCAGTAAAAACACTACCGTT
TTCTCCTTCACAGTTCTTTAACACATGCCCTGGAAGTGAACAACTTAATATAGAAAACCCTTCC
TTTACATCAACCCCAATTTGTGGACAGAAAGTTCTTATTACAACTCCTCTTCAAAAGGAAGCGA
CCCCCAAAGATCAAAAAGAAAATGTAGGGTTTAGAACACCTACTATTAGAAGATCGATACTGGG
CACCACACCAAGAACTCCTACTCCTTTTAAGAATGCACTTGCTGCTCAGGAAAAGAAATATGGA
CCTCTTAAAATTGTGTCCCAGCCACTTGCCTTCTTGGAAGAAGACATTCGAGAGGTTTTAAAAG
AAGAAACTGGAACAGATATATTCCTCAAAGAGGAAGATGAACCCGCTTACAAAAGCTGCAAACA
AGAGCACTCTGCATCTGTGAAGAAAGTCAGAAAGTCACTGGCCTTAGAGAGCTGGGACAAAGAA
GAACCGGGCACCCAGCTGCTAACTGAAGACATTTCAGACATGCAGTCAAATTGTGAATGGGAAA
CAGTGGTATACGGGAAGACAGAAGACCAACTCATCATGACTGAACAAGCAAGAAGATACCTGAG
CACTTACACAGCTCCCAGCAGCACATCGAGAGCTCTGATACTCTAACTGTTACTGAAGCTGATG
AAAGGCCCCACCCCCTACTGTGCTTATGCTAAATTAGGTTGCAATGAAATTTGTCTCAATTAAT
TCTTTTAAAGGTTTTAATACATCCCTAAAATGGTTCGCGGTTTTTTCTATATTGAACAGGCAAA
AACCTAATAAGCCACTTAACGTAAGGGGTAGGCAAATTTATTATAAATATATTTTTAAGAAATG
AGAGTTTTAAAGCTTGTTTTTAAAGAACAAAGTGGGAAAATAAGGATGTTCATGGGTATTCCAA
AGTCAATTCTCACGTTAATTTCTTTCCAGGATATATGTCGCTACTTTCTCAAGGCCGTAGTCTG
TTATAAACAAGTTAGGTGTGCGTGGCCTCTGAAAGTCTGTGTTTAGGAAGCACAGAGGCTTTAT
GAAGTACTTTTGCATGTGTGCTGATTTACTTAGAGAAACACAGTGGGAAGGAGCCTCAAGGAAG
CTAGAAGTTGCACTACTAATTTTGGTATTTTTCAGAAACAATGAAATTAACTACAGTGTTAAGG
ATATTTATTTGTGCATAGTACTAAAAAAGCATTGAAAAAAAGGCTTTTTCTTACTAGTAAAGAG
TCAGTATTTCTTCATAAGTCTCAGAAGAGCTGAGAATTTTGTTGAATGTATTGTACAGTATGTA
GGAGCAAGAAAACTTTGTAAATTGGAAAGATGTCTGTTTTTATAACTTATTTTCATTTTTAAAG
CTTAAATGTAGATATTTATATATACAGGGTGTCTAGAAGCCAGTGTTGTTTCTTGCCATTACAG
CTAACATAGTAAAGAATAACTTTGACTTTCAAGTATGAAATAGTTAAGTTATAGCTTCAAAGAA
TACAATATCTATACTGTATGTCACATCTACCTAAATATTGCACTATATCCTTTAAATCATGTTG
GTTATAAAGTAGTTCTAAAATGTACTAAATAATAATTTAATATTTTCTTTTTAAATTATATTGG
AGGGTCATATAAATTAATCTGGTGATTTGTATATGTGTTTGAAATTTTCATTTTGTTTAAAAAA
CAATATGGTACCTTGCTCCCTAAAACAGTCTGCACTTAGAAGTTTATTGTATTTACTCAATGTT
TCAGAAGTAGAAAATATTATCTTTTATTTATACAAATATTTTGTCCTTTTATAAATGTTTTGTG
TTTCCAGGTTACAATAGTTGCTTCAGTTGCCTGTTTAGGTGTTTGCACTTACTTTATCTCTTTT
TGAAAGAATGTCTTTGCTTATGTGGTAGAGATTTATGTAATTTTTTGAGACGTATAATGGTGTG
CTGTCAACCTAAACACTGACAGGCAGATAGAATTGTACACTGTAGTTTGAATTATTTATAATTG
ACACACTCTCTCCCTCTCCACTCCTGAAGTATGCTGCTATAGAAAGTAGCAGAGTCGGCTTGCT
GCTATGAGAGATGGAAAGAGCAACCACCACTTGCACTGTGTGAAAAGATAAGCAAATGATGGCC
AGTTCTCAAGTTAACTAATGGATTCAACGATTCCCAAGCAGGTTCTTAAAAGACCAAACACCAC
TGTGCCTCAAAACCAAACCAAACTGAACAGCTTAAGATTTTTTTAAAACTCTACTTATCTGTTA
ATAGAAATGGGACTACTGAATATTTTAATGCCTAGTTCTTCAACAGTAGACCTAAAGGGTTTTA
AGCTTTAAATCCAATTGCTAGTTTTTGCATACTATATGTTAGTGAGAAGTAAAGAATATGTGTG
GTGGTACTAAGATTATGCCTCTTGATAACAAATAGGTAAAACAATTTGAATCTTCTTAGCATGT
TAAATATGTTGATTTTTTTCTAATTAATGAACTTCTCACAGAAATTTTGCTTTGTAAAACCAAT
GATTGTGGAAAAAAAATCATACTCTATCATTTCAGTTACTTTGGGGTAATAATAGCACATAATT
CTTTTTTTTAAAAAAAAATGTAGCCTTTAGCTGCATTGGATATAATAATCTCCAGTTGCCAAAG
TAAAATATCTCAGACACGCTACATATTTTAAAACATAATTTTTCTTGAGCATTAAGTTAGCACA
AATGTTAATACATTGTCCATAAGCCTGGGCTTATGGGACATAGGACATATTTGGGTTGGTATTG
GTTGAATCCTCCAGTTAACTGCTTTGTTGCTTTTTGCAAGATTTGTAATCATAAACATGTTAGG
CATCTTAAGTCATCTTTTTTTACTGTTCACTTATATTCTTCAGTTTTCTGAAGATGCCAAGCAT
ACAGGTAGCAGCCATCCGTGCATGGAAACTGACTTCACACATACCAATACTGCATTCTGTTGTA
AGGTTTTCACATTAATACAGCAATTACACTGACTAAATTGAGTTTTTTAATATATAAAAAAAAA
ACTTTGCATTGTAAGAGAATCTTGCAGACAATGTTGAAATCTATTAACATCCAAATAAAAGCAT
CTGTGTACAAGCTG

hide sequence

RefSeq Acc Id:

XM_039109393 ⟹ XP_038965321

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	9,583,025 - 9,618,179 (+)	NCBI

RefSeq Acc Id:

XM_039109394 ⟹ XP_038965322

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	9,583,025 - 9,618,179 (+)	NCBI

RefSeq Acc Id:

XM_039109395 ⟹ XP_038965323

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	9,583,025 - 9,618,179 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100102	(Get FASTA)	NCBI Sequence Viewer
	XP_006237811	(Get FASTA)	NCBI Sequence Viewer
	XP_006237814	(Get FASTA)	NCBI Sequence Viewer
	XP_038965321	(Get FASTA)	NCBI Sequence Viewer
	XP_038965322	(Get FASTA)	NCBI Sequence Viewer
	XP_038965323	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11557	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001100102 ⟸ NM_001106632

- Sequence:

show sequence

MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASH
LQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRER
WHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG
YLQDGIKSERSSSKLQHKPCATMDHLQTQNQFYIPIPGYQYVSPDGNCVEHVQTSAFIQQPFVD
EDPDKEKKIKELELLLMSAENEVRRKRLPPQPGSFSSWSGSFLMDDSMSNTLNNLEEHTTEFYS
MDENQTVSAQQNSPTKFLAVEANAVLSSLQTIPEFAETLELIESDPVAWSDVTSFDLSDAAASP
VKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKNSCNGGDSEAIPLASPNVVKFSTPPTILRKKK
RLRVGQSAGSELGEGSLSEGNNAALKHTPVKTLPFSPSQFFNTCPGSEQLNIENPSFTSTPICG
QKVLITTPLQKEATPKDQKENVGFRTPTIRRSILGTTPRTPTPFKNALAAQEKKYGPLKIVSQP
LAFLEEDIREVLKEETGTDIFLKEEDEPAYKSCKQEHSASVKKVRKSLALESWDKEEPGTQLLT
EDISDMQSENILTTSLLMIPLLEIHDNRCNLTPEKQDINSANKTYTLTKKRPNPNTCKAVKLEK
SLQSNCEWETVVYGKTEDQLIMTEQARRYLSTYTAPSSTSRALIL

hide sequence

RefSeq Acc Id:	XP_006237811 ⟸ XM_006237749
- Peptide Label:	isoform X2
- UniProtKB:	D3ZF01 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASH LQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRER WHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG YLQDGIKSERSSSKLQHKPCATMDHLQTQNQFYIPVQIPGYQYVSPDGNCVEHVQTSAFIQQPF VDEDPDKEKKIKELELLLMSAENEVRRKRLPPQPGSFSSWSGSFLMDDSMSNTLNNLEEHTTEF YSMDENQTVSAQQNSPTKFLAVEANAVLSSLQTIPEFAETLELIESDPVAWSDVTSFDLSDAAA SPVKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKNSCNGGDSEAIPLASPNVVKFSTPPTILRK KKRLRVGQSAGSELGEGSLSEGNNAALKHTPVKTLPFSPSQFFNTCPGSEQLNIENPSFTSTPI CGQKVLITTPLQKEATPKDQKENVGFRTPTIRRSILGTTPRTPTPFKNALAAQEKKYGPLKIVS QPLAFLEEDIREVLKEETGTDIFLKEEDEPAYKSCKQEHSASVKKVRKSLALESWDKEEPGTQL LTEDISDMQSENILTTSLLMIPLLEIHDNRCNLTPEKQDINSANKTYTLTKKRPNPNTCKAVKL EKSLQSNCEWETVVYGKTEDQLIMTEQARRYLSTYTAPSSTSRALIL hide sequence

RefSeq Acc Id:

XP_006237814 ⟸ XM_006237752

- Peptide Label:

isoform X5

- Sequence:

show sequence

MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASH
LQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRER
WHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG
YLQDGIKSERSSSKLQHKPCATMDHLQTQNQFYIPVQIPGYQYVSPDGNCVEHVQTSAFIQQPF
VDEDPDKEKKIKELELLLMSAENEVRRKRLPPQPGSFSSWSGSFLMDDSMSNTLNNLEEHTTEF
YSMDENQTVSAQQNSPTKFLAVEANAVLSSLQTIPEFAETLELIESDPVAWSDVTSFDLSDAAA
SPVKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKNSCNGGDSEAIPLASPNVVKFSTPPTILRK
KKRLRVGQSAGSELGEGSLSEGNNAALKHTPVKTLPFSPSQFFNTCPGSEQLNIENPSFTSTPI
CGQKVLITTPLQKEATPKDQKENVGFRTPTIRRSILGTTPRTPTPFKNALAAQEKKYGPLKIVS
QPLAFLEEDIREVLKEETGTDIFLKEEDEPAYKSCKQEHSASVKKVRKSLALESWDKEEPGTQL
LTEDISDMQSNCEWETVVYGKTEDQLIMTEQARRYLSTYTAPSSTSRALIL

hide sequence

RefSeq Acc Id:

XP_006237813 ⟸ XM_006237751

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAKRSRSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASH
LQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRER
WHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG
YLQDGIKSERSSSKLQHKPCATMDHLQTQNQFYIPVQIPGYQYVSPDGNCVEHVQTSAFIQQPG
SFSSWSGSFLMDDSMSNTLNNLEEHTTEFYSMDENQTVSAQQNSPTKFLAVEANAVLSSLQTIP
EFAETLELIESDPVAWSDVTSFDLSDAAASPVKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKN
SCNGGDSEAIPLASPNVVKFSTPPTILRKKKRLRVGQSAGSELGEGSLSEGNNAALKHTPVKTL
PFSPSQFFNTCPGSEQLNIENPSFTSTPICGQKVLITTPLQKEATPKDQKENVGFRTPTIRRSI
LGTTPRTPTPFKNALAAQEKKYGPLKIVSQPLAFLEEDIREVLKEETGTDIFLKEEDEPAYKSC
KQEHSASVKKVRKSLALESWDKEEPGTQLLTEDISDMQSENILTTSLLMIPLLEIHDNRCNLTP
EKQDINSANKTYTLTKKRPNPNTCKAVKLEKSLQSNCEWETVVYGKTEDQLIMTEQARRYLSTY
TAPSSTSRALIL

hide sequence

RefSeq Acc Id:

XP_006237812 ⟸ XM_006237750

- Peptide Label:

isoform X2

- Sequence:

show sequence

METGPHSEDEDDDLQYADHDYEVPQQKGLKKLWNRVKWTRDEDDKLKKLVEQHGTDDWTLIASH
LQNRSDFQCQHRWQKVLNPELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRER
WHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEG
YLQDGIKSERSSSKLQHKPCATMDHLQTQNQFYIPVQIPGYQYVSPDGNCVEHVQTSAFIQQPF
VDEDPDKEKKIKELELLLMSAENEVRRKRLPPQPGSFSSWSGSFLMDDSMSNTLNNLEEHTTEF
YSMDENQTVSAQQNSPTKFLAVEANAVLSSLQTIPEFAETLELIESDPVAWSDVTSFDLSDAAA
SPVKSTPVKLMRIQHNEGAMECQFNVSLVLEGKKNSCNGGDSEAIPLASPNVVKFSTPPTILRK
KKRLRVGQSAGSELGEGSLSEGNNAALKHTPVKTLPFSPSQFFNTCPGSEQLNIENPSFTSTPI
CGQKVLITTPLQKEATPKDQKENVGFRTPTIRRSILGTTPRTPTPFKNALAAQEKKYGPLKIVS
QPLAFLEEDIREVLKEETGTDIFLKEEDEPAYKSCKQEHSASVKKVRKSLALESWDKEEPGTQL
LTEDISDMQSENILTTSLLMIPLLEIHDNRCNLTPEKQDINSANKTYTLTKKRPNPNTCKAVKL
EKSLQSNCEWETVVYGKTEDQLIMTEQARRYLSTYTAPSSTSRALIL

hide sequence

RefSeq Acc Id:

ENSRNOP00000062710 ⟸ ENSRNOT00000067977

RefSeq Acc Id:	XP_038965321 ⟸ XM_039109393
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038965323 ⟸ XM_039109395
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038965322 ⟸ XM_039109394
- Peptide Label:	isoform X3

Protein Domains

HTH myb-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

Visual

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
5	14095771	14095772	C	T	snv	DOB/Oda (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306940	AgrOrtholog
Ensembl Genes	ENSRNOG00000021669	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000062710	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067977	UniProtKB/TrEMBL
InterPro	C-myb_C	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	MYBL1	UniProtKB/TrEMBL
	SANT_DNA-bd	UniProtKB/TrEMBL
	Tscrpt_reg_HTH_Myb-type	UniProtKB/TrEMBL
	Tscrpt_reg_Wos2-domain	UniProtKB/TrEMBL
NCBI Gene	297783	ENTREZGENE
PANTHER	PTHR45614:SF9	UniProtKB/TrEMBL
Pfam	Cmyb_C	UniProtKB/TrEMBL
	Myb_DNA-binding	UniProtKB/TrEMBL
	Wos2	UniProtKB/TrEMBL
PhenoGen	Mybl1	PhenoGen
PROSITE	HTH_MYB	UniProtKB/TrEMBL
SMART	SANT	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	D3ZF01	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-29	Mybl1	MYB proto-oncogene like 1	Mybl1	myeloblastosis oncogene-like 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mybl1	myeloblastosis oncogene-like 1	Mybl1_predicted	myeloblastosis oncogene-like 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mybl1_predicted	myeloblastosis oncogene-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)