Nsmaf (neutral sphingomyelinase activation associated factor) - Rat Genome Database

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Gene: Nsmaf (neutral sphingomyelinase activation associated factor) Rattus norvegicus
Analyze
Symbol: Nsmaf
Name: neutral sphingomyelinase activation associated factor
RGD ID: 727868
Description: Enables sphingomyelin phosphodiesterase activator activity. Involved in positive regulation of apoptotic process. Orthologous to human NSMAF (neutral sphingomyelinase activation associated factor); PARTICIPATES IN ceramide signaling pathway; tumor necrosis factor mediated signaling pathway; INTERACTS WITH acrylamide; bisphenol A; dieldrin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: factor associated with neutral sphingomyelinase activation; FAN; neutral sphingomyelinase (N-SMase) activation associated factor
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2519,517,795 - 19,578,773 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl519,518,348 - 19,577,627 (-)Ensembl
Rnor_6.0519,499,111 - 19,560,308 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl519,499,480 - 19,559,393 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0524,284,202 - 24,330,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4519,850,388 - 19,896,839 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1519,850,387 - 19,896,826 (-)NCBI
Celera518,818,560 - 18,876,983 (-)NCBICelera
Cytogenetic Map5q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:17685585   PMID:21792922  


Genomics

Comparative Map Data
Nsmaf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2519,517,795 - 19,578,773 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl519,518,348 - 19,577,627 (-)Ensembl
Rnor_6.0519,499,111 - 19,560,308 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl519,499,480 - 19,559,393 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0524,284,202 - 24,330,089 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4519,850,388 - 19,896,839 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1519,850,387 - 19,896,826 (-)NCBI
Celera518,818,560 - 18,876,983 (-)NCBICelera
Cytogenetic Map5q12NCBI
NSMAF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38858,583,504 - 58,659,853 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl858,583,508 - 58,659,853 (-)EnsemblGRCh38hg38GRCh38
GRCh37859,496,063 - 59,572,412 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36859,658,617 - 59,734,940 (-)NCBINCBI36hg18NCBI36
Build 34859,658,616 - 59,734,940NCBI
Celera855,489,087 - 55,565,423 (-)NCBI
Cytogenetic Map8q12.1NCBI
HuRef854,983,237 - 55,059,459 (-)NCBIHuRef
CHM1_1859,547,946 - 59,624,282 (-)NCBICHM1_1
T2T-CHM13v2.0859,004,662 - 59,081,032 (-)NCBI
Nsmaf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3946,396,207 - 6,454,840 (-)NCBIGRCm39mm39
GRCm39 Ensembl46,396,207 - 6,454,271 (-)Ensembl
GRCm3846,396,207 - 6,454,840 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl46,396,207 - 6,454,271 (-)EnsemblGRCm38mm10GRCm38
MGSCv3746,323,354 - 6,381,418 (-)NCBIGRCm37mm9NCBIm37
MGSCv3646,323,373 - 6,381,408 (-)NCBImm8
Celera46,314,494 - 6,371,636 (-)NCBICelera
Cytogenetic Map4A1NCBI
Nsmaf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545417,114,391 - 17,162,899 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545417,113,817 - 17,162,900 (-)NCBIChiLan1.0ChiLan1.0
NSMAF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1856,674,476 - 56,751,615 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl856,674,483 - 56,751,585 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0855,023,206 - 55,099,816 (-)NCBIMhudiblu_PPA_v0panPan3
NSMAF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1299,371,111 - 9,427,781 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl299,371,446 - 9,428,149 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha299,683,855 - 9,741,168 (-)NCBI
ROS_Cfam_1.0299,456,517 - 9,514,056 (-)NCBI
ROS_Cfam_1.0 Ensembl299,456,528 - 9,514,387 (-)Ensembl
UMICH_Zoey_3.1299,454,605 - 9,511,846 (-)NCBI
UNSW_CanFamBas_1.0299,580,282 - 9,637,690 (-)NCBI
UU_Cfam_GSD_1.0299,859,864 - 9,917,254 (-)NCBI
Nsmaf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530360,454,147 - 60,509,699 (-)NCBI
SpeTri2.0NW_00493649614,275,582 - 14,331,330 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSMAF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl474,236,830 - 74,298,193 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1474,231,488 - 74,296,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2481,031,102 - 81,089,597 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSMAF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1854,565,714 - 54,642,896 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl854,567,121 - 54,642,054 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603987,075,409 - 87,157,007 (+)NCBIVero_WHO_p1.0
Nsmaf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474433,439,068 - 33,528,413 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D5Mco23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2519,525,039 - 19,525,314 (+)MAPPERmRatBN7.2
Rnor_6.0519,506,356 - 19,506,630NCBIRnor6.0
Rnor_5.0524,290,894 - 24,291,168UniSTSRnor5.0
RGSC_v3.4519,857,079 - 19,857,354RGDRGSC3.4
RGSC_v3.4519,857,080 - 19,857,354UniSTSRGSC3.4
RGSC_v3.1519,857,079 - 19,857,354RGD
Celera518,825,252 - 18,825,526UniSTS
Cytogenetic Map5q12UniSTS
RH131475  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2519,517,950 - 19,518,148 (+)MAPPERmRatBN7.2
Rnor_6.0519,499,267 - 19,499,464NCBIRnor6.0
Rnor_5.0524,283,805 - 24,284,002UniSTSRnor5.0
RGSC_v3.4519,849,991 - 19,850,188UniSTSRGSC3.4
Celera518,818,163 - 18,818,360UniSTS
RH 3.4 Map5107.3UniSTS
Cytogenetic Map5q12UniSTS
AI009260  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2519,573,968 - 19,574,157 (+)MAPPERmRatBN7.2
Rnor_6.0519,555,588 - 19,555,776NCBIRnor6.0
Rnor_5.0524,339,613 - 24,339,801UniSTSRnor5.0
Celera518,873,383 - 18,873,571UniSTS
RH 3.4 Map587.8UniSTS
Cytogenetic Map5q12UniSTS
BF410046  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2519,528,434 - 19,528,535 (+)MAPPERmRatBN7.2
Rnor_6.0519,509,751 - 19,509,851NCBIRnor6.0
Rnor_5.0524,294,289 - 24,294,389UniSTSRnor5.0
RGSC_v3.4519,860,475 - 19,860,575UniSTSRGSC3.4
Celera518,828,619 - 18,828,719UniSTS
RH 3.4 Map5105.0UniSTS
Cytogenetic Map5q12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:88
Count of miRNA genes:80
Interacting mature miRNAs:82
Transcripts:ENSRNOT00000014289
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 51 35 19 35 8 11 74 35 41 11 8
Low 1 6 6 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000014289   ⟹   ENSRNOP00000014289
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl519,518,348 - 19,577,627 (-)Ensembl
Rnor_6.0 Ensembl519,499,664 - 19,559,244 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000089666   ⟹   ENSRNOP00000073042
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl519,518,348 - 19,577,627 (-)Ensembl
Rnor_6.0 Ensembl519,499,480 - 19,559,393 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107237   ⟹   ENSRNOP00000086135
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl519,518,348 - 19,558,619 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111501   ⟹   ENSRNOP00000095634
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl519,518,348 - 19,565,309 (-)Ensembl
RefSeq Acc Id: NM_181389   ⟹   NP_852054
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2519,518,348 - 19,577,627 (-)NCBI
Rnor_6.0519,499,664 - 19,559,244 (-)NCBI
Rnor_5.0524,284,202 - 24,330,089 (-)NCBI
RGSC_v3.4519,850,388 - 19,896,839 (-)RGD
Celera518,818,560 - 18,876,983 (-)RGD
Sequence:
RefSeq Acc Id: XM_039110148   ⟹   XP_038966076
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2519,517,795 - 19,578,762 (-)NCBI
RefSeq Acc Id: XM_039110149   ⟹   XP_038966077
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2519,520,057 - 19,577,621 (-)NCBI
RefSeq Acc Id: XM_039110150   ⟹   XP_038966078
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2519,533,524 - 19,578,773 (-)NCBI
Protein Sequences
Protein RefSeqs NP_852054 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966076 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966077 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966078 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAO00726 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_852054   ⟸   NM_181389
- Sequence:
RefSeq Acc Id: ENSRNOP00000073042   ⟸   ENSRNOT00000089666
RefSeq Acc Id: ENSRNOP00000014289   ⟸   ENSRNOT00000014289
RefSeq Acc Id: XP_038966076   ⟸   XM_039110148
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966077   ⟸   XM_039110149
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038966078   ⟸   XM_039110150
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000086135   ⟸   ENSRNOT00000107237
RefSeq Acc Id: ENSRNOP00000095634   ⟸   ENSRNOT00000111501
Protein Domains
BEACH   BEACH-type PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4H2-F1-model_v2 AlphaFold A0A0G2K4H2 1-920 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693558
Promoter ID:EPDNEW_R4079
Type:initiation region
Name:Nsmaf_1
Description:neutral sphingomyelinase activation associated factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0519,559,380 - 19,559,440EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727868 AgrOrtholog
BioCyc Gene G2FUF-42070 BioCyc
Ensembl Genes ENSRNOG00000010234 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014289 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000073042 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014289 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000089666 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.10.1540.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro BEACH_dom UniProtKB/TrEMBL
  BEACH_dom_sf UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  PH-BEACH_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:353233 UniProtKB/TrEMBL
NCBI Gene 353233 ENTREZGENE
Pfam Beach UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
PhenoGen Nsmaf PhenoGen
PROSITE BEACH UniProtKB/TrEMBL
  PH_BEACH UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART Beach UniProtKB/TrEMBL
  GRAM UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
Superfamily-SCOP Beige_BEACH UniProtKB/TrEMBL
  WD40_like UniProtKB/TrEMBL
UniProt A0A0G2K4H2_RAT UniProtKB/TrEMBL
  F1M974_RAT UniProtKB/TrEMBL
  Q7TSY5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-20 Nsmaf  neutral sphingomyelinase activation associated factor  Nsmaf  neutral sphingomyelinase (N-SMase) activation associated factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED