D5Rat130 Marker Search Result - Rat Genome Database

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Marker: D5Rat130

Symbol: D5Rat130
Also known as: R0245-C11; oxsts11039; 
RGD ID: 40330
Expected Size: 145 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2531,663,789 - 31,663,928 (+)MAPPERmRatBN7.2
Rnor_6.0531,926,122 - 31,926,260NCBIRnor6.0
Rnor_5.0536,590,997 - 36,591,135UniSTSRnor5.0
RGSC_v3.4532,701,967 - 32,702,105UniSTSRGSC3.4
RGSC_v3.4532,701,659 - 32,702,109RGDRGSC3.4
RGSC_v3.1532,702,146 - 32,702,284RGD
Celera530,814,646 - 30,814,784UniSTS
RH 3.4 Map5165.04UniSTS
RH 3.4 Map5165.04RGD
RH 2.0 Map5189.1RGD
SHRSP x BN Map519.3299RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   SS.LEW-(D5Rat130-D5Rat108)/Jr   SS.LEW-(D5Rat130-D5Mit19)/Jr   SS.LEW-(D5Rat130-D5Mco10)/Jr   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd   SS.LEW-(D5Rat130-D5Rat31)/JrMcwi   SS.LEW-(D5Rat130-D5Rat108)/JrMcwi   SS.LEW-(D5Rat130-D5Rat72)/Mcwi  
QTLs:   Scl54  


Annotation



Strains and Sequence

Sequence
 
Forward Primer TGTGCACACCAACATTCATG
Reverse Primer AACTCTTTAGGGCATTTTAATTTTT
 
Template
TGNCAAGTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCTAAAACTCTTTAGGGCATTTTA
ATTTTTAGTTTCTAATTTAGTTTCATTTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCG
TGTGTGTGTGTGTGTAGGTGTGTGTGTGTGTAAGTATGGAGTCATGAATGTTGGTGTGCACATA
TGAATTAAAAATTATTTAGGGGAATTTAGTTCTGTCCTTCCACTATAGTATAGGAGATGTGAAT
TCAGATCACCATGCACATGAATAAAATATGTTTTACCCAGGGAGCATTCTCAGAATCCTTGCCA
TAGAAAAATAATTTTGTGGATTTCTTTAATTTCCAAACATCTTCCCATTCATCCTTTTCTTCTA
TTTAAACTTCAACACTACCATTCGCTTTCATATCAACTGTTCACTTAACCTTCACATACACATC
ATTGAAATCTTTAGTTATCTCATCTCTAGGCCTCATATAGATTCTCAGTACCGAGCGCGAATTC
GTAATCATGGTCATAGCTGTNTCTGTGTGNATTGTTATCGCTCACNTTCACACAACAACGAGCG
GNGCC

Region

Nucleotide Sequences
GenBank Nucleotide CH473962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
2312562Pur18Proteinuria QTL 182.60.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1549901Neudeg2Neurodegradation QTL 240nervous system integrity trait (VT:0010566)mononuclear cell count (CMO:0002119)52483871044045280Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303115 UniSTS
UniSTS 122090 UniSTS