Bpnt2 (3'(2'), 5'-bisphosphate nucleotidase 2) - Rat Genome Database

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Gene: Bpnt2 (3'(2'), 5'-bisphosphate nucleotidase 2) Rattus norvegicus
Analyze
Symbol: Bpnt2
Name: 3'(2'), 5'-bisphosphate nucleotidase 2
RGD ID: 1306455
Description: Predicted to have 3',5'-nucleotide bisphosphate phosphatase activity and 3'-nucleotidase activity. Predicted to be involved in several processes, including chondroitin sulfate metabolic process; embryonic digit morphogenesis; and skeletal system development. Predicted to localize to cytosol; nuclear body; and trans-Golgi network membrane. Orthologous to human BPNT2 (3'(2'), 5'-bisphosphate nucleotidase 2); INTERACTS WITH acrylamide; bisphenol A; flutamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ac2-190; Golgi 3-prime phosphoadenosine 5-prime phosphate 3-prime phosphatase; Golgi-resident adenosine 3',5'-bisphosphate 3'-phosphatase; golgi-resident PAP phosphatase; gPAPP; IMP 3; Impad1; IMPase 3; inositol monophosphatase 3; inositol monophosphatase domain containing 1; inositol monophosphatase domain-containing protein 1; inositol-1(or 4)-monophosphatase 3; LOC312952; myo-inositol monophosphatase A3; phosphoadenosine phosphate 3'-nucleotidase; RGD1306455; similar to Ac2-190
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2517,775,684 - 17,802,570 (-)NCBI
Rnor_6.0 Ensembl517,633,766 - 17,663,589 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1790,188,043 - 90,218,013 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01790,191,119 - 90,218,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0522,419,595 - 22,446,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4518,086,121 - 18,109,691 (-)NCBIRGSC3.4rn4RGSC3.4
Celera517,116,716 - 17,144,147 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:18539921   PMID:18695242   PMID:19946888  


Genomics

Comparative Map Data
Bpnt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2517,775,684 - 17,802,570 (-)NCBI
Rnor_6.0 Ensembl517,633,766 - 17,663,589 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1790,188,043 - 90,218,013 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01790,191,119 - 90,218,013 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0522,419,595 - 22,446,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4518,086,121 - 18,109,691 (-)NCBIRGSC3.4rn4RGSC3.4
Celera517,116,716 - 17,144,147 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
BPNT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl856,957,931 - 56,993,867 (-)EnsemblGRCh38hg38GRCh38
GRCh38856,957,931 - 56,993,874 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37857,870,490 - 57,906,426 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36858,033,042 - 58,068,981 (-)NCBINCBI36hg18NCBI36
Celera853,861,222 - 53,897,192 (-)NCBI
Cytogenetic Map8q12.1NCBI
HuRef853,338,861 - 53,374,799 (-)NCBIHuRef
CHM1_1857,922,244 - 57,958,186 (-)NCBICHM1_1
Bpnt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3944,762,484 - 4,793,306 (-)NCBIGRCm39mm39
GRCm39 Ensembl44,762,484 - 4,793,355 (-)Ensembl
GRCm3844,762,484 - 4,793,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl44,762,484 - 4,793,355 (-)EnsemblGRCm38mm10GRCm38
MGSCv3744,691,489 - 4,720,453 (-)NCBIGRCm37mm9NCBIm37
MGSCv3644,691,489 - 4,720,453 (-)NCBImm8
Celera44,712,407 - 4,741,376 (-)NCBICelera
Cytogenetic Map4A1NCBI
Bpnt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545415,899,820 - 15,918,222 (-)NCBIChiLan1.0ChiLan1.0
BPNT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1850,753,792 - 50,785,055 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl850,753,792 - 50,785,055 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0853,385,837 - 53,417,019 (-)NCBIMhudiblu_PPA_v0panPan3
BPNT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1298,176,977 - 8,215,561 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl298,182,508 - 8,215,868 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha298,489,359 - 8,527,888 (-)NCBI
ROS_Cfam_1.0298,248,236 - 8,286,775 (-)NCBI
UMICH_Zoey_3.1298,265,711 - 8,304,249 (-)NCBI
UNSW_CanFamBas_1.0298,391,268 - 8,430,020 (-)NCBI
UU_Cfam_GSD_1.0298,670,438 - 8,708,972 (-)NCBI
Bpnt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530371,263,529 - 71,285,901 (+)NCBI
SpeTri2.0NW_0049364963,498,534 - 3,521,939 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BPNT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl475,191,257 - 75,215,907 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1475,191,256 - 75,210,988 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2482,110,550 - 82,130,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BPNT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1852,962,686 - 52,999,006 (-)NCBI
ChlSab1.1 Ensembl852,968,532 - 52,998,996 (-)Ensembl
Vero_WHO_p1.0NW_02366603988,779,510 - 88,815,872 (+)NCBI
Bpnt2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248862,983,077 - 3,005,596 (+)NCBI

Position Markers
RH134182  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2517,780,531 - 17,780,725 (+)MAPPER
Rnor_6.0517,641,690 - 17,641,883NCBIRnor6.0
Rnor_6.01790,195,975 - 90,196,168NCBIRnor6.0
Rnor_5.01791,858,903 - 91,859,096UniSTSRnor5.0
Rnor_5.0522,424,443 - 22,424,636UniSTSRnor5.0
RGSC_v3.4518,087,871 - 18,088,064UniSTSRGSC3.4
Celera517,121,564 - 17,121,757UniSTS
RH 3.4 Map597.6UniSTS
Cytogenetic Map5q12UniSTS
RH139763  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2517,803,419 - 17,803,633 (+)MAPPER
Rnor_6.0517,664,577 - 17,664,790NCBIRnor6.0
Rnor_6.01790,218,863 - 90,219,076NCBIRnor6.0
Rnor_5.01791,881,791 - 91,882,004UniSTSRnor5.0
Rnor_5.0522,447,330 - 22,447,543UniSTSRnor5.0
RGSC_v3.4518,110,759 - 18,110,972UniSTSRGSC3.4
Celera517,144,997 - 17,145,210UniSTS
RH 3.4 Map597.4UniSTS
Cytogenetic Map5q12UniSTS
RH140766  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01791,854,347 - 91,854,501NCBIRnor5.0
Rnor_5.01376,483,360 - 76,483,514NCBIRnor5.0
Rnor_5.0522,419,895 - 22,420,049NCBIRnor5.0
RGSC_v3.41368,997,448 - 68,997,601UniSTSRGSC3.4
RGSC_v3.4518,083,316 - 18,083,469UniSTSRGSC3.4
Celera1366,117,744 - 66,117,897UniSTS
Celera517,117,017 - 17,117,170UniSTS
Cytogenetic Map5q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)175241095790843779Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)175241095790843779Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175347518090690466Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175387148890843779Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175399194790843779Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176751265790843779Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:876
Count of miRNA genes:323
Interacting mature miRNAs:453
Transcripts:ENSRNOT00000033151, ENSRNOT00000034495, ENSRNOT00000072803, ENSRNOT00000073534
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 38 55 39 19 39 8 10 74 34 36 11 8
Low 5 2 2 2 1 1 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000033151   ⟹   ENSRNOP00000066904
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl517,633,766 - 17,663,500 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000034495   ⟹   ENSRNOP00000038358
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl517,641,747 - 17,663,589 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000072803   ⟹   ENSRNOP00000067120
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1790,191,119 - 90,218,013 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000073534   ⟹   ENSRNOP00000065350
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1790,188,043 - 90,217,786 (-)Ensembl
RefSeq Acc Id: NM_001008772   ⟹   NP_001008772
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2517,775,684 - 17,802,570 (-)NCBI
Rnor_6.01790,191,119 - 90,218,013 (-)NCBI
Rnor_5.0522,419,595 - 22,446,480 (-)NCBI
Celera517,116,716 - 17,144,147 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001008772 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAP86272 (Get FASTA)   NCBI Sequence Viewer  
  D4AD37 (Get FASTA)   NCBI Sequence Viewer  
  EDM11627 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001008772   ⟸   NM_001008772
- UniProtKB: D4AD37 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000067120   ⟸   ENSRNOT00000072803
RefSeq Acc Id: ENSRNOP00000066904   ⟸   ENSRNOT00000033151
RefSeq Acc Id: ENSRNOP00000065350   ⟸   ENSRNOT00000073534
RefSeq Acc Id: ENSRNOP00000038358   ⟸   ENSRNOT00000034495

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700618
Promoter ID:EPDNEW_R11142
Type:multiple initiation site
Name:Impad1_1
Description:inositol monophosphatase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01790,218,009 - 90,218,069EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306455 AgrOrtholog
Ensembl Genes ENSRNOG00000027079 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000046647 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000038358 UniProtKB/Swiss-Prot
  ENSRNOP00000065350 UniProtKB/TrEMBL
  ENSRNOP00000066904 UniProtKB/TrEMBL
  ENSRNOP00000067120 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000033151 UniProtKB/TrEMBL
  ENSRNOT00000034495 UniProtKB/Swiss-Prot
  ENSRNOT00000072803 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000073534 UniProtKB/TrEMBL
InterPro Inositol_monophosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Inositol_monophosphatase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:103689950 UniProtKB/Swiss-Prot
  rno:312952 UniProtKB/Swiss-Prot
NCBI Gene Impad1 ENTREZGENE
Pfam Inositol_P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bpnt2 PhenoGen
PROSITE IMP_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt D4AD37 ENTREZGENE, UniProtKB/Swiss-Prot
  Q7TPJ5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Bpnt2  3'(2'), 5'-bisphosphate nucleotidase 2  Impad1  inositol monophosphatase domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Impad1  inositol monophosphatase domain containing 1  RGD1306455  similar to Ac2-190  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1306455  similar to Ac2-190  RGD1306455_predicted  similar to Ac2-190 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306455_predicted  similar to Ac2-190 (predicted)  LOC312952_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC312952_predicted  similar to Ac2-190 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL