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Gene: Prdm13 (PR/SET domain 13) Rattus norvegicus
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Symbol: Prdm13
Name: PR/SET domain 13
Description: Predicted to have DNA binding activity; DNA-binding transcription factor activity; and histone methyltransferase activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; neurogenesis; and positive regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Orthologous to human PRDM13 (PR/SET domain 13); INTERACTS WITH acrylamide; bisphenol A; copper atom.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC689695; LOW QUALITY PROTEIN: PR domain zinc finger protein 13; PR domain 13; PR domain containing 13; PR domain zinc finger protein 13; similar to PR domain containing 13
Orthologs:
Homo sapiens (human) : PRDM13 (PR/SET domain 13)  HGNC  Alliance
Mus musculus (house mouse) : Prdm13 (PR domain containing 13)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Prdm13 (PR/SET domain 13)
Pan paniscus (bonobo/pygmy chimpanzee) : PRDM13 (PR/SET domain 13)
Canis lupus familiaris (dog) : PRDM13 (PR/SET domain 13)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Prdm13 (PR/SET domain 13)
Sus scrofa (pig) : PRDM13 (PR/SET domain 13)
Chlorocebus sabaeus (African green monkey) : PRDM13 (PR/SET domain 13)
Heterocephalus glaber (naked mole-rat) : Prdm13 (PR/SET domain 13)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0535,821,023 - 35,831,897 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl535,823,983 - 35,831,712 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0540,479,940 - 40,520,016 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4536,422,405 - 36,429,851 (-)NCBIRGSC3.4rn4RGSC3.4
Celera534,241,250 - 34,249,988 (-)NCBICelera
Cytogenetic Map5q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Prdm13
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1589883
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.