Atp6v1h (ATPase H+ transporting V1 subunit H)

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Gene: Atp6v1h (ATPase H+ transporting V1 subunit H) Rattus norvegicus

Analyze

Symbol:

Atp6v1h

Name:

ATPase H+ transporting V1 subunit H

RGD ID:

1562450

Description:

Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in endocytosis and synaptic vesicle lumen acidification. Is extrinsic component of synaptic vesicle membrane. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H); PARTICIPATES IN oxidative phosphorylation pathway; phagocytosis pathway; rheumatoid arthritis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H; ATPase, H+ transporting, lysosomal V1 subunit H; CGI-11; SFD; SFDalpha; SFDbeta; V-ATPase H subunit; V-type proton ATPase subunit H; vacuolar ATP synthase subunit H; vacuolar ATPase subunit H; vacuolar proton pump H subunit; VMA13

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP6V1H (ATPase H+ transporting V1 subunit H)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Atp6v1h (ATPase, H+ transporting, lysosomal V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp6v1h (ATPase H+ transporting V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP6V1H (ATPase H+ transporting V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP6V1H (ATPase H+ transporting V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atp6v1h (ATPase H+ transporting V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP6V1H (ATPase H+ transporting V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP6V1H (ATPase H+ transporting V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp6v1h (ATPase H+ transporting V1 subunit H)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ATP6V1H (ATPase H+ transporting V1 subunit H)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atp6v1h (ATPase, H+ transporting, lysosomal V1 subunit H)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atp6v1h (ATPase H+ transporting V1 subunit H)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VMA13	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	VhaSFD	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	vha-15	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	vha-18	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	atp6v1h	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	14,379,029 - 14,484,703 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	14,378,257 - 14,537,962 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	16,571,060 - 16,677,083 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	18,182,103 - 18,284,839 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	17,905,754 - 18,011,765 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	14,262,352 - 14,367,898 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	14,262,349 - 14,367,898 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	19,044,551 - 19,149,940 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	14,578,149 - 14,683,476 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	13,750,922 - 13,855,545 (-)	NCBI		Celera
Cytogenetic Map	5	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (EXP)

acrylamide (ISO)

Aflatoxin B2 alpha (ISO)

antimycin A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (EXP,ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

ethanol (ISO)

flutamide (EXP)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen sulfide (ISO)

inulin (ISO)

ivermectin (ISO)

lead diacetate (ISO)

leflunomide (EXP,ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

Monobutylphthalate (ISO)

nefazodone (EXP)

oligomycin A (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phosgene (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

senecionine (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

trichostatin A (ISO)

trifluoperazine (ISO)

urethane (ISO)

valproic acid (ISO)

Yessotoxin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endocytosis (ISO)

synaptic vesicle lumen acidification (ISO)

Cellular Component

extrinsic component of synaptic vesicle membrane (EXP,IDA,IEP)

membrane (ISO)

proton-transporting V-type ATPase complex (ISO)

transmembrane transporter complex (ISO)

vacuolar proton-transporting V-type ATPase, V1 domain (IEA)

Molecular Function

protein binding (ISO)

proton-transporting ATPase activity, rotational mechanism (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

oxidative phosphorylation pathway (IEA)

phagocytosis pathway (IEA)

rheumatoid arthritis pathway (IEA)

tuberculosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular profiling of synaptic vesicle docking sites reveals novel proteins but few differences between glutamatergic and GABAergic synapses.	Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:12032142	PMID:17897319	PMID:19056867	PMID:19199708	PMID:23376485

Genomics

Comparative Map Data

Atp6v1h
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	14,379,029 - 14,484,703 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	14,378,257 - 14,537,962 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	16,571,060 - 16,677,083 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	18,182,103 - 18,284,839 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	17,905,754 - 18,011,765 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	14,262,352 - 14,367,898 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	14,262,349 - 14,367,898 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	19,044,551 - 19,149,940 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	14,578,149 - 14,683,476 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	13,750,922 - 13,855,545 (-)	NCBI		Celera
Cytogenetic Map	5	q12	NCBI

ATP6V1H
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	53,715,543 - 53,843,245 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	8	53,715,543 - 53,843,558 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	54,628,103 - 54,755,805 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	54,790,668 - 54,918,403 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	54,790,668 - 54,918,100	NCBI
Celera	8	50,618,400 - 50,746,017 (-)	NCBI		Celera
Cytogenetic Map	8	q11.23	NCBI
HuRef	8	50,095,831 - 50,223,373 (-)	NCBI		HuRef
CHM1_1	8	54,679,992 - 54,807,647 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	54,092,959 - 54,220,638 (-)	NCBI		T2T-CHM13v2.0

Atp6v1h
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	5,153,201 - 5,233,438 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	5,140,241 - 5,232,752 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	5,082,978 - 5,163,213 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	5,070,018 - 5,162,529 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	5,073,254 - 5,152,630 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	5,073,254 - 5,152,630 (+)	NCBI		MGSCv36	mm8
Celera	1	5,091,064 - 5,165,861 (+)	NCBI		Celera
Cytogenetic Map	1	A1	NCBI

Atp6v1h
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	13,099,432 - 13,213,067 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	13,099,488 - 13,213,018 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATP6V1H
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	8	45,088,917 - 45,205,842 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	50,152,664 - 50,269,290 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	47,532,058 - 47,647,588 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	47,528,972 - 47,647,588 (-)	Ensembl	panpan1.1		panPan2

ATP6V1H
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	5,381,693 - 5,544,062 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	5,260,175 - 5,508,960 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	5,757,217 - 5,919,022 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	5,460,339 - 5,622,315 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	5,339,534 - 5,587,770 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	5,391,991 - 5,557,297 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	5,601,511 - 5,762,748 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	5,683,983 - 5,845,578 (-)	NCBI		UU_Cfam_GSD_1.0

Atp6v1h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	74,035,109 - 74,138,306 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936496	646,760 - 750,461 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936496	647,171 - 750,369 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP6V1H
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	77,211,493 - 77,302,162 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	77,211,493 - 77,269,757 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	84,281,799 - 84,340,043 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP6V1H
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	49,809,668 - 49,926,735 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	49,809,580 - 49,926,706 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	92,012,516 - 92,132,542 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp6v1h
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	1,831,597 - 1,961,669 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	1,785,558 - 1,957,103 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atp6v1h
373 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	38
Count of miRNA genes:	36
Interacting mature miRNAs:	38
Transcripts:	ENSRNOT00000065402
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	2138965	32656739	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	3844018	26141981	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	3844018	47869213	Rat
61462	Niddm10	Non-insulin dependent diabetes mellitus QTL 10	3.9	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	5	5112159	47171491	Rat
631827	Alc4	Alcohol consumption QTL 4	3.5		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	5	8187501	18616199	Rat
2293666	Bmd38	Bone mineral density QTL 38	4.4		femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	5	8948228	53948228	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	12689285	57689285	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	10	74	35	41	11	8
Low								1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001013929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001398985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001398986	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000065402 ⟹ ENSRNOP00000059400

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	14,379,146 - 14,484,703 (-)	Ensembl
Rnor_6.0 Ensembl	5	14,262,467 - 14,367,898 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085654 ⟹ ENSRNOP00000075016

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	14,379,035 - 14,473,176 (-)	Ensembl
Rnor_6.0 Ensembl	5	14,262,349 - 14,356,692 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104841 ⟹ ENSRNOP00000083793

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	14,398,657 - 14,473,161 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105349 ⟹ ENSRNOP00000093916

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	14,378,257 - 14,537,962 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000107603 ⟹ ENSRNOP00000080326

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	14,378,257 - 14,473,183 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119212 ⟹ ENSRNOP00000089383

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	14,378,257 - 14,473,183 (-)	Ensembl

RefSeq Acc Id:

NM_001013929 ⟹ NP_001013951

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	14,379,145 - 14,484,703 (-)	NCBI
Rnor_6.0	5	14,262,466 - 14,367,898 (-)	NCBI
Rnor_5.0	5	19,044,551 - 19,149,940 (-)	NCBI
RGSC_v3.4	5	14,578,149 - 14,683,476 (-)	RGD
Celera	5	13,750,922 - 13,855,545 (-)	RGD

Sequence:

show sequence

CAGTCACAGCCTGAGAGACCCCTTTATTTTCTGGGTCTTGGGGAATACTGGAATTGGAATCTTT
CTCTGCTCTGATCAGGGGCAGCAACTGTGCCTGCTCAGCCTGCCCGGAAAGATGCTCCTCCAGG
TCTGTGAAACATTCAAAATCATAAAGTTTAGATGACCAAGATGGACATTCGAGGTGCCGTGGAT
GCTGCTGTCCCAACTAACATCATTGCAGCCAAGGCTGCTGAAGTTCGTGCCAACAAAGTGAACT
GGCAGTCCTATCTTCAGGGGCAGATGATTTCTGCTGAAGATTGTGAATTTATTCAAAGGTTCGA
AATGAAGAGATGTTCTGAGGAGAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAGTGTGCTAAA
ACGTTTATAAATCTGATGACACACATCTCCAAAGAACAGACAGTGCAGTACATACTGACCATGG
TCGACGACATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCAAAACGAAG
CAAGAGCACTGCCTGGCCATACTTTCTGCCAATGTTGAATCGCCAGGACCCCTTTACTGTTCAT
ATGGCAGCAAGAATTATTGCCAAGTTAGCAGCCTGGGGAAAGGAACTCATGGAAGGCAGTGACT
TAAATTACTACTTCAATTGGATAAAAACTCAGTTGAGTTCACAGAAACTTCGTGGTAGCGGTGT
TGCTGTTGAAACAGGAACAATCTCTGCGAGCGATAGTTCTCAGTATGTGCAGTGTGTTGCTGGC
TGTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGTTTTGCCTGGGTGGAAGCAGATGGGGTGA
ACTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATATCAAATGATTTTTTC
AATATGGCTTCTGGCATTCAGTCCTCAAATGTGTGAACACCTTCGTCGCTATAACATCATTCCT
GTTCTGTCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCAT
TCCGTAATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAAGAGTATGCTCTGGCTATGAT
TCAATGCAAAGTCCTAAAACAGTTGGAGAATTTGGAGCAGCAGAAGTATGATGATGAAGATATC
AGTGAAGACATCAAATTTCTTTTGGAAAAATTTGGTGAGAGTGTCCAGGACCTTAGAATCTTGA
CAAAACTTCTGGAGGTATCAGATGATCCACAAGTTTTAGCTGTTGCTGCTCATGATGTTGGAGA
ATATGTCCGGCATTATCCCCGGGGCAAACGGGTTATTGAGCAGCTCGGTGGGAAGCAGCTGGTG
ATGAACCACATGCACCATGAAGACCAGCAGGTCCGCTACAATGCTCTTCTGGCTGTGCAGAAGC
TCATGGTGCACAACTGGGAGTATCTTGGTAAACAGCTCCAGTCGGAGCAGCCCCAGACTGCTGC
TGCTCGAAGCTGAACTGACTTCTTCAGCCTTTCTGCACCTCCAATGGACCACTGGAGTGAGAAC
CTCAGTCTTTAGGGTCAAAAGCAAATAGTTTTTAATTTAATGGCAACTTCTCTTCTGTTGTATA
GCTCTTCCCAATGGTAATTCCTGGGGGAATAAAAGTGTTTGCTTGTTAAGTTGTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237801 ⟹ XP_006237863

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	14,379,029 - 14,473,223 (-)	NCBI
Rnor_6.0	5	14,262,352 - 14,356,705 (-)	NCBI
Rnor_5.0	5	19,044,551 - 19,149,940 (-)	NCBI

Sequence:

show sequence

ACGTGCCGCTGCTCACGTGCCCAGACGCTGCTGTCACTTTGCAGCTGTTCCGGCTTTTTCCGTG
AGAGCCTCTTAACGTCTGTCGCGGAGTCGCCTTCCCATTGCTCTGGGCTTTCCGTGGCCACTGA
GGCTTCGGAGCTCGACCCGCACCTGCCTGCCCTTGTGGCCCTCACTCCCCGAGGCTATCCAGGT
CTGTGAAACATTCAAAATCATAAAGTTTAGATGACCAAGATGGACATTCGAGGTGCCGTGGATG
CTGCTGTCCCAACTAACATCATTGCAGCCAAGGCTGCTGAAGTTCGTGCCAACAAAGTGAACTG
GCAGTCCTATCTTCAGGGGCAGATGATTTCTGCTGAAGATTGTGAATTTATTCAAAGGTTCGAA
ATGAAGAGATGTTCTGAGGAGAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAGTGTGCTAAAA
CGTTTATAAATCTGATGACACACATCTCCAAAGAACAGACAGTGCAGTACATACTGACCATGGT
CGACGACATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCAAAACGAAGC
AAGAGCACTGCCTGGCCATACTTTCTGCCAATGTTGAATCGCCAGGACCCCTTTACTGTTCATA
TGGCAGCAAGAATTATTGCCAAGTTAGCAGCCTGGGGAAAGGAACTCATGGAAGGCAGTGACTT
AAATTACTACTTCAATTGGATAAAAACTCAGTTGAGTTCACAGAAACTTCGTGGTAGCGGTGTT
GCTGTTGAAACAGGAACAATCTCTGCGAGCGATAGTTCTCAGTATGTGCAGTGTGTTGCTGGCT
GTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGTTTTGCCTGGGTGGAAGCAGATGGGGTGAA
CTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATATCAAATGATTTTTTCA
ATATGGCTTCTGGCATTCAGTCCTCAAATGTGTGAACACCTTCGTCGCTATAACATCATTCCTG
TTCTGTCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCTTGCAGCATT
CCGTAATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAAGAGTATGCTCTGGCTATGATT
CAATGCAAAGTCCTAAAACAGTTGGAGAATTTGGAGCAGCAGAAGTATGATGATGAAGATATCA
GTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAGTGTCCAGGACCTTAGCTCATTTGA
TGAATACAGTTCAGAACTTAAATCTGGAAGGTTGGAATGGAGTCCCGTACACAAGTCTGAGAAA
TTTTGGAGAGAAAATGCTGTGAGGTTAAATGAGAAGAACTATGAACTCTTGAAAATCTTGACAA
AACTTCTGGAGGTATCAGATGATCCACAAGTTTTAGCTGTTGCTGCTCATGATGTTGGAGAATA
TGTCCGGCATTATCCCCGGGGCAAACGGGTTATTGAGCAGCTCGGTGGGAAGCAGCTGGTGATG
AACCACATGCACCATGAAGACCAGCAGGTCCGCTACAATGCTCTTCTGGCTGTGCAGAAGCTCA
TGGTGCACAACTGGGAGTATCTTGGTAAACAGCTCCAGTCGGAGCAGCCCCAGACTGCTGCTGC
TCGAAGCTGAACTGACTTCTTCAGCCTTTCTGCACCTCCAATGGACCACTGGAGTGAGAACCTC
AGTCTTTAGGGTCAAAAGCAAATAGTTTTTAATTTAATGGCAACTTCTCTTCTGTTGTATAGCT
CTTCCCAATGGTAATTCCTGGGGGAATAAAAGTGTTTGCTTGTTAAGTTGTATAAAAGTAGGTG
CTGTGTGTATCTAGAGAAATATTACTGTTACTTATATTCTTTATGATTTTTGTATTTATTGTTC
TCTGGAAATGAATATAATTAAAGGATTCTCACTCCAAA

hide sequence

RefSeq Acc Id:

XM_006237802 ⟹ XP_006237864

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	14,379,124 - 14,473,222 (-)	NCBI
Rnor_6.0	5	14,262,352 - 14,356,705 (-)	NCBI
Rnor_5.0	5	19,044,551 - 19,149,940 (-)	NCBI

Sequence:

show sequence

ACGTGCCGCTGCTCACGTGCCCAGACGCTGCTGTCACTTTGCAGCTGTTCCGGCTTTTTCCGTG
AGAGCCTCTTAACGTCTGTCGCGGAGTCGCCTTCCCATTGCTCTGGGCTTTCCGTGGCCACTGA
GGCTTCGGAGCTCGACCCGCACCTGCCTGCCCTTGTGGCCCTCACTCCCCGAGGCTATCCAGGT
GAGGCCGCCTGGGGCCCCTCTTCGGCTCCCGAGAGCGGGCTGCTTTCCCTGCGGGCCGCGCCAG
GGTCTGCGGAGCTGCAGGGCCTTCACCGCAGAGGGAAGTAGAGGACGTGCGGGGGTGGGCAGGC
TTGGGCCAGGGCCTGGGTAGAGTCGCCGAGGCCCGGAGCCTCCCCGGAAGGCCGCACTGTGCCC
TCGGGTTCCAGCCTTTCCTGGATGGAGCCGGTTCTACCTGGGACCCGCAGTCCGCGCTGACCTT
GTTTGTTTAGGCAGCAAGTCCCCACAAGGAGAATTTAAGTTCCACACTGACTAAGCACATTGGG
AACGCGGAGTAGAATTTAGGTCTGTGAAACATTCAAAATCATAAAGTTTAGATGACCAAGATGG
ACATTCGAGGTGCCGTGGATGCTGCTGTCCCAACTAACATCATTGCAGCCAAGGCTGCTGAAGT
TCGTGCCAACAAAGTGAACTGGCAGTCCTATCTTCAGGGGCAGATGATTTCTGCTGAAGATTGT
GAATTTATTCAAAGGTTCGAAATGAAGAGATGTTCTGAGGAGAAGCAAGAGATGCTTCAAACTG
AAGGCAGCCAGTGTGCTAAAACGTTTATAAATCTGATGACACACATCTCCAAAGAACAGACAGT
GCAGTACATACTGACCATGGTCGACGACATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTC
TTTGACTATGCAAAACGAAGCAAGAGCACTGCCTGGCCATACTTTCTGCCAATGTTGAATCGCC
AGGACCCCTTTACTGTTCATATGGCAGCAAGAATTATTGCCAAGTTAGCAGCCTGGGGAAAGGA
ACTCATGGAAGGCAGTGACTTAAATTACTACTTCAATTGGATAAAAACTCAGTTGAGTTCACAG
AAACTTCGTGGTAGCGGTGTTGCTGTTGAAACAGGAACAATCTCTGCGAGCGATAGTTCTCAGT
ATGTGCAGTGTGTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGTTTTGCCTG
GGTGGAAGCAGATGGGGTGAACTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTT
CAATATCAAATGATTTTTTCAATATGGCTTCTGGCATTCAGTCCTCAAATGTGTGAACACCTTC
GTCGCTATAACATCATTCCTGTTCTGTCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAAC
AAGAATCATTCTTGCAGCATTCCGTAATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAA
GAGTATGCTCTGGCTATGATTCAATGCAAAGTCCTAAAACAGTTGGAGAATTTGGAGCAGCAGA
AGTATGATGATGAAGATATCAGTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAGTGT
CCAGGACCTTAGCTCATTTGATGAATACAGTTCAGAACTTAAATCTGGAAGGTTGGAATGGAGT
CCCGTACACAAGTCTGAGAAATTTTGGAGAGAAAATGCTGTGAGGTTAAATGAGAAGAACTATG
AACTCTTGAAAATCTTGACAAAACTTCTGGAGGTATCAGATGATCCACAAGTTTTAGCTGTTGC
TGCTCATGATGTTGGAGAATATGTCCGGCATTATCCCCGGGGCAAACGGGTTATTGAGCAGCTC
GGTGGGAAGCAGCTGGTGATGAACCACATGCACCATGAAGACCAGCAGGTCCGCTACAATGCTC
TTCTGGCTGTGCAGAAGCTCATGGTGCACAACTGGGAGTATCTTGGTAAACAGCTCCAGTCGGA
GCAGCCCCAGACTGCTGCTGCTCGAAGCTGAACTGACTTCTTCAGCCTTTCTGCACCTCCAATG
GACCACTGGAGTGAGAACCTCAGTCTTTAGGGTCAAAAGCAAATAGTTTTTAATTTAATGGCAA
CTTCTCTTCTGTTGTATAGCTCTTCCCAATGGTAATTCCTGGGGGAATAAAAGTGTTTGCTTGT
TAAGTTGTATAAAAGTAGGTGCTGTGTGTATCTAGAGAAATATTACTGTTACTTATATTCTTTA
TGATTTTTGTATTTATTGTTCTCTGGAAATGAATATAATTAAAGGATTCTCACTCCAAA

hide sequence

RefSeq Acc Id:

XM_006237804 ⟹ XP_006237866

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	14,379,029 - 14,473,223 (-)	NCBI
Rnor_6.0	5	14,262,352 - 14,356,705 (-)	NCBI
Rnor_5.0	5	19,044,551 - 19,149,940 (-)	NCBI

Sequence:

show sequence

ACGTGCCGCTGCTCACGTGCCCAGACGCTGCTGTCACTTTGCAGCTGTTCCGGCTTTTTCCGTG
AGAGCCTCTTAACGTCTGTCGCGGAGTCGCCTTCCCATTGCTCTGGGCTTTCCGTGGCCACTGA
GGCTTCGGAGCTCGACCCGCACCTGCCTGCCCTTGTGGCCCTCACTCCCCGAGGCTATCCAGGT
CTGTGAAACATTCAAAATCATAAAGTTTAGATGACCAAGATGGACATTCGAGGTGCCGTGGATG
CTGCTGTCCCAACTAACATCATTGCAGCCAAGGCTGCTGAAGTTCGTGCCAACAAAGTGAACTG
GCAGTCCTATCTTCAGGGGCAGATGATTTCTGCTGAAGATTGTGAATTTATTCAAAGGTTCGAA
ATGAAGAGATGTTCTGAGGAGAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAGTGTGCTAAAA
CGTTTATAAATCTGATGACACACATCTCCAAAGAACAGACAGTGCAGTACATACTGACCATGGT
CGACGACATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCAAAACGAAGC
AAGAGCACTGCCTGGCCATACTTTCTGCCAATGTTGAATCGCCAGGACCCCTTTACTGTTCATA
TGGCAGCAAGAATTATTGCCAAGTTAGCAGCCTGGGGAAAGGAACTCATGGAAGGCAGTGACTT
AAATTACTACTTCAATTGGATAAAAACTCAGTTGAGTTCACAGAGTTCTCAGTATGTGCAGTGT
GTTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGTTTTGCCTGGGTGGAAGCAG
ATGGGGTGAACTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATATCAAAT
GATTTTTTCAATATGGCTTCTGGCATTCAGTCCTCAAATGTGTGAACACCTTCGTCGCTATAAC
ATCATTCCTGTTCTGTCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTC
TTGCAGCATTCCGTAATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAAGAGTATGCTCT
GGCTATGATTCAATGCAAAGTCCTAAAACAGTTGGAGAATTTGGAGCAGCAGAAGTATGATGAT
GAAGATATCAGTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAGTGTCCAGGACCTTA
GCTCATTTGATGAATACAGTTCAGAACTTAAATCTGGAAGGTTGGAATGGAGTCCCGTACACAA
GTCTGAGAAATTTTGGAGAGAAAATGCTGTGAGGTTAAATGAGAAGAACTATGAACTCTTGAAA
ATCTTGACAAAACTTCTGGAGGTATCAGATGATCCACAAGTTTTAGCTGTTGCTGCTCATGATG
TTGGAGAATATGTCCGGCATTATCCCCGGGGCAAACGGGTTATTGAGCAGCTCGGTGGGAAGCA
GCTGGTGATGAACCACATGCACCATGAAGACCAGCAGGTCCGCTACAATGCTCTTCTGGCTGTG
CAGAAGCTCATGGTGCACAACTGGGAGTATCTTGGTAAACAGCTCCAGTCGGAGCAGCCCCAGA
CTGCTGCTGCTCGAAGCTGAACTGACTTCTTCAGCCTTTCTGCACCTCCAATGGACCACTGGAG
TGAGAACCTCAGTCTTTAGGGTCAAAAGCAAATAGTTTTTAATTTAATGGCAACTTCTCTTCTG
TTGTATAGCTCTTCCCAATGGTAATTCCTGGGGGAATAAAAGTGTTTGCTTGTTAAGTTGTATA
AAAGTAGGTGCTGTGTGTATCTAGAGAAATATTACTGTTACTTATATTCTTTATGATTTTTGTA
TTTATTGTTCTCTGGAAATGAATATAATTAAAGGATTCTCACTCCAAA

hide sequence

RefSeq Acc Id:

XM_008763524 ⟹ XP_008761746

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	14,379,029 - 14,473,208 (-)	NCBI
Rnor_6.0	5	14,262,352 - 14,355,291 (-)	NCBI

Sequence:

show sequence

CCCAACTAACATCATTGCAGCCAAGGCTGCTGAAGTTCGTGCCAACAAAGTGAACTGGCAGTCC
TATCTTCAGTGCGTACTGTTTGTTGGGGCAGATGATTTCTGCTGAAGATTGTGAATTTATTCAA
AGGTTCGAAATGAAGAGATGTTCTGAGGAGAAGCAAGAGATGCTTCAAACTGAAGGCAGCCAGT
GTGCTAAAACGTTTATAAATCTGATGACACACATCTCCAAAGAACAGACAGTGCAGTACATACT
GACCATGGTCGACGACATGCTGCAGGAAAATCACCAGCGTGTCAGCATTTTCTTTGACTATGCA
AAACGAAGCAAGAGCACTGCCTGGCCATACTTTCTGCCAATGTTGAATCGCCAGGACCCCTTTA
CTGTTCATATGGCAGCAAGAATTATTGCCAAGTTAGCAGCCTGGGGAAAGGAACTCATGGAAGG
CAGTGACTTAAATTACTACTTCAATTGGATAAAAACTCAGTTGAGTTCACAGAAACTTCGTGGT
AGCGGTGTTGCTGTTGAAACAGGAACAATCTCTGCGAGCGATAGTTCTCAGTATGTGCAGTGTG
TTGCTGGCTGTCTGCAGCTGATGCTCCGGGTCAATGAGTACCGTTTTGCCTGGGTGGAAGCAGA
TGGGGTGAACTGTATAATGGGCGTTTTGAGTAACAAGTGTGGTTTTCAACTTCAATATCAAATG
ATTTTTTCAATATGGCTTCTGGCATTCAGTCCTCAAATGTGTGAACACCTTCGTCGCTATAACA
TCATTCCTGTTCTGTCAGACATCCTTCAAGAATCTGTCAAAGAGAAAGTAACAAGAATCATTCT
TGCAGCATTCCGTAATTTCTTAGAAAAATCAACGGAAAGAGAAACTCGCCAAGAGTATGCTCTG
GCTATGATTCAATGCAAAGTCCTAAAACAGTTGGAGAATTTGGAGCAGCAGAAGTATGATGATG
AAGATATCAGTGAAGACATCAAATTTCTTTTGGAAAAACTTGGTGAGAGTGTCCAGGACCTTAG
CTCATTTGATGAATACAGTTCAGAACTTAAATCTGGAAGGTTGGAATGGAGTCCCGTACACAAG
TCTGAGAAATTTTGGAGAGAAAATGCTGTGAGGTTAAATGAGAAGAACTATGAACTCTTGAAAA
TCTTGACAAAACTTCTGGAGGTATCAGATGATCCACAAGTTTTAGCTGTTGCTGCTCATGATGT
TGGAGAATATGTCCGGCATTATCCCCGGGGCAAACGGGTTATTGAGCAGCTCGGTGGGAAGCAG
CTGGTGATGAACCACATGCACCATGAAGACCAGCAGGTCCGCTACAATGCTCTTCTGGCTGTGC
AGAAGCTCATGGTGCACAACTGGGAGTATCTTGGTAAACAGCTCCAGTCGGAGCAGCCCCAGAC
TGCTGCTGCTCGAAGCTGAACTGACTTCTTCAGCCTTTCTGCACCTCCAATGGACCACTGGAGT
GAGAACCTCAGTCTTTAGGGTCAAAAGCAAATAGTTTTTAATTTAATGGCAACTTCTCTTCTGT
TGTATAGCTCTTCCCAATGGTAATTCCTGGGGGAATAAAAGTGTTTGCTTGTTAAGTTGTATAA
AAGTAGGTGCTGTGTGTATCTAGAGAAATATTACTGTTACTTATATTCTTTATGATTTTTGTAT
TTATTGTTCTCTGGAAATGAATATAATTAAAGGATTCTCACTCCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001013951	(Get FASTA)	NCBI Sequence Viewer
	NP_001385914	(Get FASTA)	NCBI Sequence Viewer
	NP_001385915	(Get FASTA)	NCBI Sequence Viewer
	XP_006237863	(Get FASTA)	NCBI Sequence Viewer
	XP_006237864	(Get FASTA)	NCBI Sequence Viewer
	XP_006237866	(Get FASTA)	NCBI Sequence Viewer
	XP_008761746	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83669	(Get FASTA)	NCBI Sequence Viewer
	EDM11581	(Get FASTA)	NCBI Sequence Viewer
	EDM11582	(Get FASTA)	NCBI Sequence Viewer
	EDM11583	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001013951 ⟸ NM_001013929

- UniProtKB:

Q5XIL1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRCSEEKQE
MLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLP
MLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISAS
DSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQM
CEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLEN
LEQQKYDDEDISEDIKFLLEKFGESVQDLRILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKR
VIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS

hide sequence

RefSeq Acc Id:	XP_006237866 ⟸ XM_006237804
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ACJ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRCSEEKQE MLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLP MLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQSSQYVQCVAGCLQLMLR VNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQ ESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFL LEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSD DPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEY LGKQLQSEQPQTAAARS hide sequence

RefSeq Acc Id:	XP_006237863 ⟸ XM_006237801
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9J2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRCSEEKQE MLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLP MLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISAS DSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQM CEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLEN LEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLN EKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQV RYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS hide sequence

RefSeq Acc Id:	XP_006237864 ⟸ XM_006237802
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9J2 (UniProtKB/TrEMBL), A0A8I5ZQ24 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTKMDIRGAVDAAVPTNIIAAKAAEVRANKVNWQSYLQGQMISAEDCEFIQRFEMKRCSEEKQE MLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQENHQRVSIFFDYAKRSKSTAWPYFLP MLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWIKTQLSSQKLRGSGVAVETGTISAS DSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLSNKCGFQLQYQMIFSIWLLAFSPQM CEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKSTERETRQEYALAMIQCKVLKQLEN LEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELKSGRLEWSPVHKSEKFWRENAVRLN EKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRGKRVIEQLGGKQLVMNHMHHEDQQV RYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS hide sequence

RefSeq Acc Id:

XP_008761746 ⟸ XM_008763524

- Peptide Label:

isoform X3

- Sequence:

show sequence

MISAEDCEFIQRFEMKRCSEEKQEMLQTEGSQCAKTFINLMTHISKEQTVQYILTMVDDMLQEN
HQRVSIFFDYAKRSKSTAWPYFLPMLNRQDPFTVHMAARIIAKLAAWGKELMEGSDLNYYFNWI
KTQLSSQKLRGSGVAVETGTISASDSSQYVQCVAGCLQLMLRVNEYRFAWVEADGVNCIMGVLS
NKCGFQLQYQMIFSIWLLAFSPQMCEHLRRYNIIPVLSDILQESVKEKVTRIILAAFRNFLEKS
TERETRQEYALAMIQCKVLKQLENLEQQKYDDEDISEDIKFLLEKLGESVQDLSSFDEYSSELK
SGRLEWSPVHKSEKFWRENAVRLNEKNYELLKILTKLLEVSDDPQVLAVAAHDVGEYVRHYPRG
KRVIEQLGGKQLVMNHMHHEDQQVRYNALLAVQKLMVHNWEYLGKQLQSEQPQTAAARS

hide sequence

RefSeq Acc Id:

ENSRNOP00000075016 ⟸ ENSRNOT00000085654

RefSeq Acc Id:

ENSRNOP00000059400 ⟸ ENSRNOT00000065402

RefSeq Acc Id:

ENSRNOP00000093916 ⟸ ENSRNOT00000105349

RefSeq Acc Id:

ENSRNOP00000089383 ⟸ ENSRNOT00000119212

RefSeq Acc Id:

ENSRNOP00000083793 ⟸ ENSRNOT00000104841

RefSeq Acc Id:

ENSRNOP00000080326 ⟸ ENSRNOT00000107603

Protein Domains

Armadillo repeat-containing ATPase V1 complex subunit H C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K9J2-F1-model_v2	AlphaFold	A0A0G2K9J2	1-483	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693552

Promoter ID:

EPDNEW_R4066

Type:

initiation region

Name:

Atp6v1h_1

Description:

ATPase H+ transporting V1 subunit H

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	14,356,642 - 14,356,702	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562450	AgrOrtholog
BioCyc Gene	G2FUF-42156	BioCyc
BioCyc Pathway	PWY-7980 [ATP biosynthesis]	BioCyc
Ensembl Genes	ENSRNOG00000030862	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000059400	ENTREZGENE
	ENSRNOP00000059400.1	UniProtKB/TrEMBL
	ENSRNOP00000075016.2	UniProtKB/TrEMBL
	ENSRNOP00000080326	ENTREZGENE
	ENSRNOP00000080326.1	UniProtKB/TrEMBL
	ENSRNOP00000083793	ENTREZGENE
	ENSRNOP00000083793.1	UniProtKB/TrEMBL
	ENSRNOP00000089383	ENTREZGENE
	ENSRNOP00000089383.1	UniProtKB/TrEMBL
	ENSRNOP00000093916	ENTREZGENE
	ENSRNOP00000093916.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065402	ENTREZGENE
	ENSRNOT00000065402.2	UniProtKB/TrEMBL
	ENSRNOT00000085654.2	UniProtKB/TrEMBL
	ENSRNOT00000104841	ENTREZGENE
	ENSRNOT00000104841.1	UniProtKB/TrEMBL
	ENSRNOT00000105349	ENTREZGENE
	ENSRNOT00000105349.1	UniProtKB/TrEMBL
	ENSRNOT00000107603	ENTREZGENE
	ENSRNOT00000107603.1	UniProtKB/TrEMBL
	ENSRNOT00000119212	ENTREZGENE
	ENSRNOT00000119212.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
	1.25.40.150	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7135583	IMAGE-MGC_LOAD
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-rpt_dom	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	ATPase_V1-cplx_hsu	UniProtKB/TrEMBL
	ATPase_V1-cplx_hsu_C	UniProtKB/TrEMBL
	ATPase_V1-cplx_hsu_C_sf	UniProtKB/TrEMBL
KEGG Report	rno:297797	UniProtKB/TrEMBL
MGC_CLONE	MGC:94513	IMAGE-MGC_LOAD
NCBI Gene	297797	ENTREZGENE
PANTHER	PTHR10698	UniProtKB/TrEMBL
	V-TYPE PROTON ATPASE SUBUNIT H	UniProtKB/TrEMBL
Pfam	Arm_2	UniProtKB/TrEMBL
	V-ATPase_H_C	UniProtKB/TrEMBL
	V-ATPase_H_N	UniProtKB/TrEMBL
PhenoGen	Atp6v1h	PhenoGen
PIRSF	ATPase_V1_H	UniProtKB/TrEMBL
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A0A0G2K9J2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQ24	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZWI2_RAT	UniProtKB/TrEMBL
	A0A8I6ACJ2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AIG1_RAT	UniProtKB/TrEMBL
	E9PTI1_RAT	UniProtKB/TrEMBL
	Q5XIL1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-25	Atp6v1h	ATPase H+ transporting V1 subunit H	Atp6v1h	ATPase, H+ transporting, lysosomal V1 subunit H	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Atp6v1h	ATPase, H+ transporting, lysosomal V1 subunit H	Atp6v1h	vacuolar ATPase subunit H	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Atp6v1h	vacuolar ATPase subunit H			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)