Imported Annotations - OMIM | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| congenital disorder of glycosylation type IIf | ISO | RGD:1322776 | 7240710 | OMIM | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology Annotations |
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Analyze GeneStrainQTL List |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsDisease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | GOA data from the GO Consortium |
| 3. | MGD data from the GO Consortium |
| 4. | OMIM Disease Annotation Pipeline |
| 5. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 6. | RGD automated import pipeline for gene-chemical interactions |
References - uncurated| PubMed | 30985278 |
Genomics
Comparative Map Data| Slc35a1 (Rattus norvegicus - Norway rat) |
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| SLC35A1 (Homo sapiens - human) |
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| Slc35a1 (Mus musculus - house mouse) |
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| Slc35a1 (Chinchilla lanigera - long-tailed chinchilla) |
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| SLC35A1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| SLC35A1 (Canis lupus familiaris - dog) |
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| Slc35a1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| SLC35A1 (Sus scrofa - pig) |
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| SLC35A1 (Chlorocebus sabaeus - African green monkey) |
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| Slc35a1 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| RH143460 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 30 | 57 | 41 | 19 | 41 | 1 | 3 | 72 | 35 | 34 | 11 | 1 |
| Low | 13 | 7 | 8 | 2 | 7 | 7 | |||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001107924 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006237996 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07047842 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01035995 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473962 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ213102 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000011969 ⟹ ENSRNOP00000011969 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000081150 ⟹ ENSRNOP00000071048 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_001107924 ⟹ NP_001101394 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
TTCCAGAAAATGTCAGTCTATTCTTCAAACTATACTGCTTGACAGTGATGACTCTGGTGGCTGChide sequence |
| RefSeq Acc Id: | XM_006237996 ⟹ XP_006238058 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
AGCTGCGGTTTTCAGAGCCCCGGTAGGACCGGGTTTCCCAGACTTGTCGCTCCGCACGCCGCGChide sequence |
Protein Sequences| Protein RefSeqs | NP_001101394 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006238058 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | EDL98597 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001101394 ⟸ NM_001107924 |
| - UniProtKB: | D3ZZ48 (UniProtKB/TrEMBL) |
| - Sequence: |
MTLVAAAYTIALRYTRTTAEGLYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSENVLGhide sequence |
| RefSeq Acc Id: | XP_006238058 ⟸ XM_006237996 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A0G2JZH4 (UniProtKB/TrEMBL) |
| - Sequence: |
MAPARENVSLFFKLYCLTVMTLVAAAYTIALRYTRTTAEGLYFSTTAVCITEVIKLLISVGLLAhide sequence |
| RefSeq Acc Id: | ENSRNOP00000011969 ⟸ ENSRNOT00000011969 |
| RefSeq Acc Id: | ENSRNOP00000071048 ⟸ ENSRNOT00000081150 |
TranscriptomePromoters| RGD ID: | 13693625 | ||||||||
| Promoter ID: | EPDNEW_R4144 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Slc35a1_1 | ||||||||
| Description: | solute carrier family 35 member A1 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1311359 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000008908 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000011969 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000071048 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000011969 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000081150 | ENTREZGENE, UniProtKB/TrEMBL | |
| InterPro | Nuc_sug_transpt | UniProtKB/TrEMBL |
| KEGG Report | rno:313139 | UniProtKB/TrEMBL |
| NCBI Gene | 313139 | ENTREZGENE |
| PANTHER | Nuc_sug_transpt | UniProtKB/TrEMBL |
| Pfam | Nuc_sug_transp | UniProtKB/TrEMBL |
| PhenoGen | Slc35a1 | PhenoGen |
| PIRSF | UDP-gal_transpt | UniProtKB/TrEMBL |
| UniGene | Rn.24337 | ENTREZGENE |
| UniProt | A0A0G2JZH4 | ENTREZGENE, UniProtKB/TrEMBL |
| D3ZZ48 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2016-02-25 | Slc35a1 | solute carrier family 35 member A1 | Slc35a1 | solute carrier family 35 (CMP-sialic acid transporter), member A1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-11-20 | Slc35a1 | solute carrier family 35 (CMP-sialic acid transporter), member A1 | Slc35a1 | solute carrier family 35 (CMP-sialic acid transporter), member 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2008-04-30 | Slc35a1 | solute carrier family 35 (CMP-sialic acid transporter), member 1 | Slc35a1_predicted | solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
| 2005-01-12 | Slc35a1_predicted | solute carrier family 35 (CMP-sialic acid transporter), member 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |
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| More on Slc35a1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1311359 |
| Created: | 2005-01-12 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-03-04 |
| Status: | ACTIVE |
