Ggact-ps3 (gamma-glutamylamine cyclotransferase, pseudogene 3) - Rat Genome Database

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Gene: Ggact-ps3 (gamma-glutamylamine cyclotransferase, pseudogene 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Ggact-ps3
Name: gamma-glutamylamine cyclotransferase, pseudogene 3
RGD ID: 9434881
Description: Predicted to enable gamma-glutamylaminecyclotransferase activity. Predicted to be involved in modified amino acid catabolic process. Predicted to be active in cytosol. Orthologous to human GGACT (gamma-glutamylamine cyclotransferase).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: ENSRNOG00000067156; gamma-glutamylamine cyclotransferase, pseudogene 1; gamma-glutamylaminecyclotransferase-like; Ggact-ps1; LOC103692341; LOC366341; similar to CG2811-PA
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8552,150,496 - 52,151,465 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.2547,343,248 - 47,355,132 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl547,354,774 - 47,355,154 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl547,354,774 - 47,355,154 (+)NCBImRatBN7.2
Rnor_6.0548,194,452 - 48,206,336 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0552,778,430 - 52,790,314 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4549,238,197 - 49,250,081 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera546,101,601 - 46,113,485 (+)NCBICelera
Cytogenetic Map5q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)

Molecular Function

References

Genomics

Variants

.
Variants in Ggact-ps3
85 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000107502   ⟹   ENSRNOP00000089153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl547,354,774 - 47,355,154 (+)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000089153.1
Ensembl Acc Id: ENSRNOP00000089153   ⟸   ENSRNOT00000107502
Protein Domains
Gamma-glutamylcyclotransferase AIG2-like

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9434881 AgrOrtholog
BioCyc Gene G2FUF-41713 BioCyc
Ensembl Genes ENSRNOG00000067156 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000107502.1 UniProtKB/TrEMBL
Gene3D-CATH Gamma-glutamyl cyclotransferase-like UniProtKB/TrEMBL
InterPro AIG2-like_dom UniProtKB/TrEMBL
  GGACT UniProtKB/TrEMBL
  GGCT-like UniProtKB/TrEMBL
  GGCT-like_sf UniProtKB/TrEMBL
NCBI Gene LOC103692341 ENTREZGENE
PANTHER GAMMA-GLUTAMYLAMINECYCLOTRANSFERASE UniProtKB/TrEMBL
  PTHR12510 UniProtKB/TrEMBL
Pfam GGACT UniProtKB/TrEMBL
PhenoGen Ggact-ps3 PhenoGen
RatGTEx ENSRNOG00000067156 RatGTEx
Superfamily-SCOP SSF110857 UniProtKB/TrEMBL
UniProt A0A8I6AB57_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ggact-ps3  gamma-glutamylamine cyclotransferase, pseudogene 3  Ggact-ps1  gamma-glutamylamine cyclotransferase, pseudogene 1  Symbol and Name Changed 1299863 APPROVED
2022-06-02 Ggact-ps1  gamma-glutamylamine cyclotransferase, pseudogene 1  ENSRNOG00000067156    Data merged from RGD:150343481 737654 PROVISIONAL
2022-03-24 Ggact-ps1  gamma-glutamylamine cyclotransferase, pseudogene 1  LOC103692341  gamma-glutamylaminecyclotransferase-like  Name and Symbol changed 629549 APPROVED
2021-08-31 ENSRNOG00000067156        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-07-29 LOC103692341  gamma-glutamylaminecyclotransferase-like  LOC366341  similar to CG2811-PA  Data merged from RGD:1586083 737654 PROVISIONAL
2014-08-25 LOC103692341  gamma-glutamylaminecyclotransferase-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC366341  similar to CG2811-PA      Symbol and Name status set to provisional 70820 PROVISIONAL