Pgm1 (phosphoglucomutase 1) - Rat Genome Database

Name: Pgm1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pgm1 (phosphoglucomutase 1) Rattus norvegicus

Analyze

Symbol:

Pgm1

Name:

phosphoglucomutase 1

RGD ID:

3316

Description:

Enables phosphoglucomutase activity. Involved in cellular response to magnetism and glucose metabolic process. Located in Z disc. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation It; endometrial cancer; and teratoma. Orthologous to human PGM1 (phosphoglucomutase 1); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; fructose-1,6-bisphosphatase deficiency pathway; galactokinase deficiency pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

glucose phosphomutase 1; PGM 1; phosphoglucomutase-1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PGM1 (phosphoglucomutase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Pgm1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pgm1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PGM1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PGM1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pgm1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PGM1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PGM1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pgm1 (phosphoglucomutase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Pgm1 (phosphoglucomutase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PGM1 (phosphoglucomutase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	pgm1 (phosphoglucomutase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	R05F9.6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PGM1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	PGM2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Pgm1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pgm1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	114,595,298 - 114,654,728 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	114,595,293 - 114,654,728 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	117,151,682 - 117,211,109 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	118,877,005 - 118,936,428 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	118,939,539 - 118,998,971 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	118,743,632 - 118,803,055 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	118,743,632 - 118,803,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	122,648,579 - 122,708,212 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	120,595,650 - 120,655,915 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	113,142,712 - 113,202,105 (+)	NCBI		Celera
RH 3.4 Map	5		RGD
Cytogenetic Map	5	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

Colorectal Neoplasms (ISO)

congenital disorder of glycosylation (ISO)

congenital disorder of glycosylation It (ISO)

Craniosynostosis Syndrome, Autosomal Recessive (ISO)

endometrial cancer (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Myocardial Ischemia (ISO)

teratoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP)

1H-pyrazole (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-naphthoflavone (ISO)

ammonium chloride (EXP)

arsenous acid (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Bisphenol B (ISO)

bisphenol F (EXP,ISO)

Brodifacoum (EXP)

cadmium dichloride (EXP)

caffeine (ISO)

capsaicin (EXP,ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

clofibric acid (EXP)

cobalt dichloride (EXP,ISO)

coumarin (ISO)

cyclosporin A (ISO)

deguelin (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

dinophysistoxin 1 (ISO)

dioxygen (ISO)

dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (ISO)

folic acid (ISO)

fonofos (ISO)

formaldehyde (ISO)

gentamycin (EXP)

hydralazine (ISO)

inulin (ISO)

isotretinoin (ISO)

ivermectin (ISO)

lead(0) (ISO)

linalool (ISO)

methidathion (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (ISO)

N-nitrosomorpholine (EXP)

nickel dichloride (EXP)

nickel sulfate (ISO)

obeticholic acid (ISO)

ozone (ISO)

panobinostat (ISO)

paracetamol (ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

picoxystrobin (ISO)

propiconazole (ISO)

Propiverine (EXP)

prostaglandin A1 (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

sodium arsenite (EXP,ISO)

tamoxifen (ISO)

terbufos (ISO)

tetrachloromethane (EXP,ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tolcapone (EXP)

trichostatin A (ISO)

triclosan (ISO)

trovafloxacin (EXP)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

vincristine (ISO)

zinc dichloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IBA,IEA)

cellular response to magnetism (IEP)

glucose metabolic process (IDA,IEA,ISO)

intracellular calcium ion homeostasis (TAS)

Cellular Component

cytosol (IBA)

Z disc (IDA)

Molecular Function

magnesium ion binding (IEA,ISO)

phosphoglucomutase activity (IBA,IDA,IEA,ISO)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

amino sugar metabolic pathway (IEA)

congenital sucrase-isomaltase deficiency pathway (ISO)

fructose-1,6-bisphosphatase deficiency pathway (ISO)

galactokinase deficiency pathway (ISO)

galactose metabolic pathway (IEA,ISO)

galactosemia pathway (ISO)

GALE deficiency pathway (ISO)

gluconeogenesis pathway (IEA,ISO)

glycogen biosynthetic pathway (ISO)

glycogen degradation pathway (ISO)

glycogen storage disease type Ia pathway (ISO)

glycogen storage disease type Ib pathway (ISO)

glycogen storage disease type III pathway (ISO)

glycogen storage disease type IV pathway (ISO)

glycogen storage disease type VI pathway (ISO)

glycolysis pathway (IEA)

glycolysis/gluconeogenesis pathway (IEA)

hypoxia inducible factor pathway (ISO)

nucleotide sugar metabolic pathway (IEA,ISO)

pentose phosphate pathway (IEA,ISO)

phosphoenolpyruvate carboxykinase deficiency pathway (ISO)

purine metabolic pathway (IEA)

ribose 5-phosphate isomerase deficiency pathway (ISO)

starch and sucrose metabolic pathway (IEA,ISO)

transaldolase deficiency pathway (ISO)

triosephosphate isomerase deficiency pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Impaired binding of ZASP/Cypher with phosphoglucomutase 1 is associated with dilated cardiomyopathy.	Arimura T, etal., Cardiovasc Res. 2009 Jul 1;83(1):80-8. doi: 10.1093/cvr/cvp119. Epub 2009 Apr 17.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	KEGG: Kyoto Encyclopedia of Genes and Genomes	KEGG
5.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
6.	Gene loss in human teratomas.	Linder D, Proc Natl Acad Sci U S A. 1969 Jul;63(3):699-704.
7.	Isoenzymes of hexokinase, 6-phosphogluconate dehydrogenase, phosphoglucomutase and lactate dehydrogenase in uterine cancer.	Marshall MJ, etal., Br J Cancer. 1979 Sep;40(3):380-90.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	Long-term alcohol intake enhances ADP-ribosylation of the multifunctional enzyme, phosphoglucomutase, in rat liver.	Nomura F, etal., Hepatology 1996 Nov;24(5):1246-9.
11.	Isolation and immunohistochemical localization of a chondroitin sulfate proteoglycan from adult rat brain.	Normand G, etal., J Neurochem. 1988 Sep;51(3):665-76.
12.	Differentiation of chromaffin cells elicited by ELF MF modifies gene expression pattern.	Olivares-Banuelos T, etal., Cell Biol Int. 2004;28(4):273-9.
13.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
14.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
15.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16.	SMPDB Annotation Import Pipeline	Pipeline to import SMPDB annotations from SMPDB into RGD
17.	GOA pipeline	RGD automated data pipeline
18.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
20.	Comprehensive gene review and curation	RGD comprehensive gene curation
21.	Isolation and expression of a rat liver cDNA encoding phosphoglucomutase.	Rivera AA, etal., Gene 1993 Nov 15;133(2):261-6.
22.	A phylogenetic approach to the identification of phosphoglucomutase genes.	Whitehouse DB, etal., Mol Biol Evol. 1998 Apr;15(4):456-62.

Additional References at PubMed

PMID:1530890	PMID:1840235	PMID:4646763	PMID:5392465	PMID:7323947	PMID:7444718	PMID:7665162	PMID:12477932	PMID:19056867	PMID:23533145	PMID:25288802	PMID:26945066
PMID:26972339

Genomics

Comparative Map Data

Pgm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	114,595,298 - 114,654,728 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	114,595,293 - 114,654,728 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	117,151,682 - 117,211,109 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	118,877,005 - 118,936,428 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	118,939,539 - 118,998,971 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	118,743,632 - 118,803,055 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	118,743,632 - 118,803,055 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	122,648,579 - 122,708,212 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	120,595,650 - 120,655,915 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	113,142,712 - 113,202,105 (+)	NCBI		Celera
RH 3.4 Map	5		RGD
Cytogenetic Map	5	q33	NCBI

PGM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	63,593,411 - 63,660,245 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	63,593,411 - 63,660,245 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	64,059,082 - 64,125,916 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	63,831,535 - 63,898,504 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	63,770,967 - 63,837,935	NCBI
Celera	1	62,348,856 - 62,415,793 (+)	NCBI		Celera
Cytogenetic Map	1	p31.3	NCBI
HuRef	1	62,166,918 - 62,233,884 (+)	NCBI		HuRef
CHM1_1	1	64,174,737 - 64,241,622 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	63,469,205 - 63,536,042 (+)	NCBI		T2T-CHM13v2.0

Pgm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	99,786,648 - 99,844,491 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	99,786,611 - 99,844,491 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	99,929,451 - 99,987,294 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	99,929,414 - 99,987,294 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	99,602,056 - 99,659,899 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	99,427,439 - 99,485,223 (+)	NCBI		MGSCv36	mm8
Celera	4	98,273,961 - 98,332,209 (+)	NCBI		Celera
Cytogenetic Map	4	C6	NCBI
cM Map	4	45.71	NCBI

Pgm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955423	26,408,595 - 26,437,527 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955423	26,408,775 - 26,437,527 (-)	NCBI	ChiLan1.0	ChiLan1.0

PGM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	1	162,344,100 - 162,411,352 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	62,849,451 - 62,916,359 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	64,658,599 - 64,725,496 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	64,658,599 - 64,725,496 (+)	Ensembl	panpan1.1		panPan2

PGM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	46,444,433 - 46,577,621 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	46,515,295 - 46,577,622 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	46,505,433 - 46,638,431 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	46,624,512 - 46,757,954 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	46,672,266 - 46,757,997 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	46,586,542 - 46,719,720 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	46,532,568 - 46,666,112 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	46,790,338 - 46,923,562 (-)	NCBI		UU_Cfam_GSD_1.0

Pgm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	76,845,424 - 76,905,846 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936692	1,160,623 - 1,221,746 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936692	1,160,836 - 1,221,270 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PGM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	148,851,183 - 148,994,952 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	148,851,183 - 148,918,891 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	137,171,270 - 137,233,581 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PGM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	69,391,487 - 69,495,156 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	69,428,996 - 69,466,191 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	47,968,869 - 48,035,370 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pgm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624742	30,542,448 - 30,592,162 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624742	30,543,161 - 30,592,117 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pgm1
414 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	72
Count of miRNA genes:	69
Interacting mature miRNAs:	69
Transcripts:	ENSRNOT00000013785
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
1582212	Livw2	Liver weight QTL 2	3.5	0.0004	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	5	99016066	119085810	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
7794743	Bp373	Blood pressure QTL 373		0.0058	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	112175546	116047089	Rat

Markers in Region

D5Rhm1

No map positions available.

D5Rhm2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	114,659,557 - 114,659,726 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	118,807,885 - 118,808,053	NCBI	Rnor6.0
Rnor_5.0	5	122,713,042 - 122,713,210	UniSTS	Rnor5.0
RGSC_v3.4	5	120,660,745 - 120,660,913	UniSTS	RGSC3.4
Celera	5	113,206,935 - 113,207,103	UniSTS
Cytogenetic Map	5	q33	UniSTS

BF386789

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	114,594,795 - 114,594,990 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	118,743,130 - 118,743,324	NCBI	Rnor6.0
Rnor_5.0	5	122,648,077 - 122,648,271	UniSTS	Rnor5.0
RGSC_v3.4	5	120,595,148 - 120,595,342	UniSTS	RGSC3.4
Celera	5	113,142,210 - 113,142,404	UniSTS
RH 3.4 Map	5	791.3	UniSTS
Cytogenetic Map	5	q33	UniSTS

RH142295

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	114,627,194 - 114,627,782 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	118,775,524 - 118,776,111	NCBI	Rnor6.0
Rnor_5.0	5	122,680,510 - 122,681,097	UniSTS	Rnor5.0
RGSC_v3.4	5	120,628,325 - 120,628,912	UniSTS	RGSC3.4
Celera	5	113,174,572 - 113,175,159	UniSTS
RH 3.4 Map	5	791.3	UniSTS
Cytogenetic Map	5	q33	UniSTS

RH141738

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	114,654,451 - 114,654,660 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	118,802,779 - 118,802,987	NCBI	Rnor6.0
Rnor_5.0	5	122,707,936 - 122,708,144	UniSTS	Rnor5.0
RGSC_v3.4	5	120,655,639 - 120,655,847	UniSTS	RGSC3.4
Celera	5	113,201,829 - 113,202,037	UniSTS
RH 3.4 Map	5	793.1	UniSTS
Cytogenetic Map	5	q33	UniSTS

ha2531

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	136,958,572 - 136,959,506 (+)	MAPPER	mRatBN7.2
mRatBN7.2	5	114,606,869 - 114,607,662 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	118,755,205 - 118,755,997	NCBI	Rnor6.0
Rnor_6.0	2	142,094,995 - 142,095,928	NCBI	Rnor6.0
Rnor_5.0	5	122,660,152 - 122,660,944	UniSTS	Rnor5.0
Rnor_5.0	2	161,781,593 - 161,782,526	UniSTS	Rnor5.0
RGSC_v3.4	2	141,796,704 - 141,797,637	UniSTS	RGSC3.4
RGSC_v3.4	5	120,607,223 - 120,608,015	UniSTS	RGSC3.4
Celera	5	113,154,160 - 113,154,952	UniSTS
Celera	2	131,456,163 - 131,457,096	UniSTS
Cytogenetic Map	5	q33	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High								3
Medium	3	43	57	41	19	41	8	8	74	35	36	11	8
Low											5
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC099807	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L11694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U20195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000013785 ⟹ ENSRNOP00000013785

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	114,595,293 - 114,654,727 (+)	Ensembl
Rnor_6.0 Ensembl	5	118,743,632 - 118,803,055 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103908 ⟹ ENSRNOP00000097832

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	114,619,959 - 114,654,728 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118798 ⟹ ENSRNOP00000081014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	114,621,360 - 114,654,728 (+)	Ensembl

RefSeq Acc Id:

NM_017033 ⟹ NP_058729

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	114,595,298 - 114,654,728 (+)	NCBI
Rnor_6.0	5	118,743,632 - 118,803,055 (+)	NCBI
Rnor_5.0	5	122,648,579 - 122,708,212 (+)	NCBI
RGSC_v3.4	5	120,595,650 - 120,655,915 (+)	RGD
Celera	5	113,142,712 - 113,202,105 (+)	RGD

Sequence:

show sequence

CCTGAGCCCTCTGCAGCAGCCAGAGCCGCAGCTTCTGTCGCCCCGCAGCCCGTCGCCACCATGG
TGAAGATCGTGACAGTGAAGACGCAGGCATATCCGGATCAGAAGCCGGGCACCAGCGGGTTGCG
GAAGCGAGTGAAGGTGTTCCAGGGCAACGCTAACTATGCGGAGAATTTCATCCAAAGCATCGTC
TCCACCGTGGAGCCGGCGTTGAGGCAGGAGGCCACGCTGGTTGTGGGCGGGGACGGTCGCTTCT
ACATGACCGAGGCCATCCAGCTCATCGTACGCATCGCCGCAGCCAACGGGATTGGCCGCCTGGT
TATTGGACAGAATGGAATCCTCTCCACTCCTGCTGTATCCTGCATTATCCGAAAAATCAAAGCC
ATTGGTGGGATCATTCTGACAGCTAGCCACAATCCAGGAGGGCCCAATGGAGATTTTGGAATTA
AATTCAATATTTCTAATGGGGGTCCTGCTCCAGAAGCAATCACGGATAAAATTTTCCAAATCAG
CAAGACAATCGAAGAATATGCCATTTGCCCTGACTTGAAGGTAGACCTCAGTGTTCTGGGGAAG
CAGCAGTTTGACTTGGAAAACAAGTTCAAGCCCTTCACAGTGGAGATCGTGGACTCAGTCGAGG
CCTATGCCACAATGCTGAGAAACATCTTTGATTTCAACGCACTGAAGGAGCTACTCTCTGGCCC
AAACAGACTGAAGATCCGCATCGACGCCATGCACGGAGTTGTGGGACCGTACGTCAAGAAGATC
CTCTGTGAAGAACTTGGTGCCCCCGCAAACTCAGCTGTGAACTGTGTTCCCCTGGAGGATTTTG
GAGGCCACCACCCTGACCCCAACCTCACCTACGCTGCTGACCTGGTGGAAACCATGAAGTCAGG
AGAGCATGATTTCGGGGCTGCCTTTGATGGTGATGGGGATAGGAACATGATTCTGGGCAAGCAC
GGGTTCTTTGTGAACCCTTCTGACTCTGTGGCTGTCATCGCCGCCAACATCTTCAGCATTCCGT
ATTTCCAGCAGACTGGGGTCCGTGGCTTTGCCCGCAGCATGCCCACAAGTGGTGCTCTGGACCG
GGTAGCAAACGCCACAAAGATCGCTTTGTATGAGACCCCAACTGGCTGGAAGTTTTTTGGGAAT
TTGATGGATGCAAGCAAGCTTTCCCTCTGTGGAGAGGAGAGCTTTGGGACTGGTTCAGACCACA
TCCGAGAGAAAGATGGACTGTGGGCCGTCCTGGCCTGGCTCTCCATTCTGGCCACCCGCAAACA
GAGCGTGGAGGACATTCTCAAAGACCACTGGCAGAAGTTTGGTCGGAACTTCTTCACCAGGTAT
GACTACGAGGAGGTGGAAGCCGAGGGTGCAAACAAAATGATGAAGGACCTGGAGGCCCTGATGC
TGGACCGCTCCTTTGTGGGGAAGCAGTTCTCAGCAAACGATAAAGTCTACACGGTGGAGAAAGC
GGATAATTTCGAATATAGTGACCCAGTAGATGGAAGCATTTCAAAAAATCAGGGCTTGCGGCTT
ATTTTTGCAGATGGTTCTCGTATCATCTTCAGACTGAGCGGCACCGGGAGTGCTGGGGCTACCA
TCCGGCTCTATATTGATAGCTACGAGAAGGACGCTGCCAAGATCAACCAGGACCCCCAGGTCAT
GCTGGCGCCCCTGATCTCCATTGCTCTGAAAGTGTCCCAGCTCCAGGAGAGGACAGGCCGCACT
GCGCCCACTGTCATCACCTAGAGAGATGGCTGGATGTGGCACATCCCTCCCCCAGGAACTATCC
ACGCTGCCTGATTGAAGAGCACAGACAGAAACAGTGTATTCGCCTGGGCCTTTTAGGACTCCAT
CTTGATTTTTTTTACTTCCCACTTGATAAACAGCCATTTGGGAGGCACTGCCACTGTTTGGGGG
GGGGTGCGAAGAAGCAGACCTGAGGGCTCGCACCCATGTCTGTCCCTTCTCTTGCCCTATTGGA
TACCCGCTGTGTGAGCCTTTGTCTCCCAGCATCAGGTACAGTACACTACACTGTAAAGATTTGG
AGGCCATCTCCTGTCCCTGGGTGTGCGCCTGTAGAGTGATACTGAAGTTCCTGCTTCACTGTGA
AAGTCTCCCCATTAATGTTTACATGCAATCCAGCAGAAGACAGTTTCTGGTGCCTTCTCTCTAA
TCAATTTTTCTCCGAGTGAGATGCGCTTGTCTTCAGATCTGTGTTATTTCTCATCTCTCATCTG
CACAGATAGTTGAGGTATTAAAGCAGAATGTGCCCCTGTTAAAAAAAAAAAAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

XM_006238442 ⟹ XP_006238504

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	114,620,858 - 114,654,728 (+)	NCBI
Rnor_6.0	5	118,769,155 - 118,803,055 (+)	NCBI
Rnor_5.0	5	122,648,579 - 122,708,212 (+)	NCBI

Sequence:

show sequence

GCTTGACCTTTTATTTGCTCAGTGGCTCCAAGCAACTTTAGCTGCAGACAGCCCAGCGGCTCCA
GTTCAAGGGGCAGCAGGAACAGTGAGAGCCATTACCAGGACACTGTGGCAGCTCCAGGTCCGAT
AGAGAATTTGGGGGACCCTCAGCTACTTCCTGGACACCCTCACAGAGCCAAGTGTTGGATATGA
AAGATGAGCGACTTTGAAGAATGGATTTCTGGGACATACAGGAGAACAGAAGAGGGTCCACTCC
CACTGCTGACGTTTGCCACAGTTCCTTACCACGACCAGAAACCAGGAACAAGTGGATTGCGGAA
GAACACCTATTACTTTGAGGAGAAGCCTTGCTATCTGGAGAATTTCATCCAGAGCATATTCTTT
TCCATAGACCTAAAAGATCGCCAGGGATCGTCACTGGTGGTCGGTGGAGACGGGCGGTATTTTA
ACAAGTCAGCCATAGAGACAGTAGTGCAGATGGCAGCTGCCAATGGGATTGGCCGCCTGGTTAT
TGGACAGAATGGAATCCTCTCCACTCCTGCTGTATCCTGCATTATCCGAAAAATCAAAGCCATT
GGTGGGATCATTCTGACAGCTAGCCACAATCCAGGAGGGCCCAATGGAGATTTTGGAATTAAAT
TCAATATTTCTAATGGGGGTCCTGCTCCAGAAGCAATCACGGATAAAATTTTCCAAATCAGCAA
GACAATCGAAGAATATGCCATTTGCCCTGACTTGAAGGTAGACCTCAGTGTTCTGGGGAAGCAG
CAGTTTGACTTGGAAAACAAGTTCAAGCCCTTCACAGTGGAGATCGTGGACTCAGTCGAGGCCT
ATGCCACAATGCTGAGAAACATCTTTGATTTCAACGCACTGAAGGAGCTACTCTCTGGCCCAAA
CAGACTGAAGATCCGCATCGACGCCATGCACGGAGTTGTGGGACCGTACGTCAAGAAGATCCTC
TGTGAAGAACTTGGTGCCCCCGCAAACTCAGCTGTGAACTGTGTTCCCCTGGAGGATTTTGGAG
GCCACCACCCTGACCCCAACCTCACCTACGCTGCTGACCTGGTGGAAACCATGAAGTCAGGAGA
GCATGATTTCGGGGCTGCCTTTGATGGTGATGGGGATAGGAACATGATTCTGGGCAAGCACGGG
TTCTTTGTGAACCCTTCTGACTCTGTGGCTGTCATCGCCGCCAACATCTTCAGCATTCCGTATT
TCCAGCAGACTGGGGTCCGTGGCTTTGCCCGCAGCATGCCCACAAGTGGTGCTCTGGACCGGGT
AGCAAACGCCACAAAGATCGCTTTGTATGAGACCCCAACTGGCTGGAAGTTTTTTGGGAATTTG
ATGGATGCAAGCAAGCTTTCCCTCTGTGGAGAGGAGAGCTTTGGGACTGGTTCAGACCACATCC
GAGAGAAAGATGGACTGTGGGCCGTCCTGGCCTGGCTCTCCATTCTGGCCACCCGCAAACAGAG
CGTGGAGGACATTCTCAAAGACCACTGGCAGAAGTTTGGTCGGAACTTCTTCACCAGGTATGAC
TACGAGGAGGTGGAAGCCGAGGGTGCAAACAAAATGATGAAGGACCTGGAGGCCCTGATGCTGG
ACCGCTCCTTTGTGGGGAAGCAGTTCTCAGCAAACGATAAAGTCTACACGGTGGAGAAAGCGGA
TAATTTCGAATATAGTGACCCAGTAGATGGAAGCATTTCAAAAAATCAGGGCTTGCGGCTTATT
TTTGCAGATGGTTCTCGTATCATCTTCAGACTGAGCGGCACCGGGAGTGCTGGGGCTACCATCC
GGCTCTATATTGATAGCTACGAGAAGGACGCTGCCAAGATCAACCAGGACCCCCAGGTCATGCT
GGCGCCCCTGATCTCCATTGCTCTGAAAGTGTCCCAGCTCCAGGAGAGGACAGGCCGCACTGCG
CCCACTGTCATCACCTAGAGAGATGGCTGGATGTGGCACATCCCTCCCCCAGGAACTATCCACG
CTGCCTGATTGAAGAGCACAGACAGAAACAGTGTATTCGCCTGGGCCTTTTAGGACTCCATCTT
GATTTTTTTTACTTCCCACTTGATAAACAGCCATTTGGGAGGCACTGCCACTGTTTGGGGGGGG
GTGCGAAGAAGCAGACCTGAGGGCTCGCACCCATGTCTGTCCCTTCTCTTGCCCTATTGGATAC
CCGCTGTGTGAGCCTTTGTCTCCCAGCATCAGGTACAGTACACTACACTGTAAAGATTTGGAGG
CCATCTCCTGTCCCTGGGTGTGCGCCTGTAGAGTGATACTGAAGTTCCTGCTTCACTGTGAAAG
TCTCCCCATTAATGTTTACATGCAATCCAGCAGAAGACAGTTTCTGGTGCCTTCTCTCTAATCA
ATTTTTCTCCGAGTGAGATGCGCTTGTCTTCAGATCTGTGTTATTTCTCATCTCTCATCTGCAC
AGATAGTTGAGGTATTAAAGCAGAATGTGCCCCTGTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_058729	(Get FASTA)	NCBI Sequence Viewer
	XP_006238504	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA16862	(Get FASTA)	NCBI Sequence Viewer
	AAA82891	(Get FASTA)	NCBI Sequence Viewer
	AAH99807	(Get FASTA)	NCBI Sequence Viewer
	AAI28704	(Get FASTA)	NCBI Sequence Viewer
	EDL97817	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013785
	ENSRNOP00000013785.4
	ENSRNOP00000081014.1
	ENSRNOP00000097832
	ENSRNOP00000097832.1
GenBank Protein	P38652	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_058729 ⟸ NM_017033

- UniProtKB:

P38652 (UniProtKB/Swiss-Prot), Q499Q4 (UniProtKB/TrEMBL), A6JRM5 (UniProtKB/TrEMBL), F7F2L9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVKIVTVKTQAYPDQKPGTSGLRKRVKVFQGNANYAENFIQSIVSTVEPALRQEATLVVGGDGR
FYMTEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFG
IKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLSVLGKQQFDLENKFKPFTVEIVDSV
EAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLED
FGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSI
PYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSD
HIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEAL
MLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGA
TIRLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT

hide sequence

RefSeq Acc Id:	XP_006238504 ⟸ XM_006238442
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AV00 (UniProtKB/TrEMBL), A0A8I5ZRI9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSDFEEWISGTYRRTEEGPLPLLTFATVPYHDQKPGTSGLRKNTYYFEEKPCYLENFIQSIFFS IDLKDRQGSSLVVGGDGRYFNKSAIETVVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIG GIILTASHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLSVLGKQQ FDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILC EELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGF FVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLM DASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWQKFGRNFFTRYDY EEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIF ADGSRIIFRLSGTGSAGATIRLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAP TVIT hide sequence

RefSeq Acc Id:

ENSRNOP00000013785 ⟸ ENSRNOT00000013785

RefSeq Acc Id:

ENSRNOP00000097832 ⟸ ENSRNOT00000103908

RefSeq Acc Id:

ENSRNOP00000081014 ⟸ ENSRNOT00000118798

Protein Domains

Alpha-D-phosphohexomutase alpha/beta/alpha

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P38652-F1-model_v2	AlphaFold	P38652	1-562	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693856

Promoter ID:

EPDNEW_R4381

Type:

initiation region

Name:

Pgm1_1

Description:

phosphoglucomutase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	118,743,600 - 118,743,660	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3316	AgrOrtholog
BioCyc Gene	G2FUF-40563	BioCyc
BioCyc Pathway	PWY-5941 [glycogen degradation II]	BioCyc
	PWY-7343 [UDP-alpha-D-glucose biosynthesis]	BioCyc
Ensembl Genes	ENSRNOG00000009889	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013785	ENTREZGENE
	ENSRNOT00000013785.7	UniProtKB/TrEMBL
	ENSRNOT00000103908	ENTREZGENE
	ENSRNOT00000103908.1	UniProtKB/TrEMBL
	ENSRNOT00000118798.1	UniProtKB/TrEMBL
Gene3D-CATH	Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Alpha-D-phosphohexomutase, C-terminal domain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7937943	IMAGE-MGC_LOAD
	IMAGE:8367784	IMAGE-MGC_LOAD
InterPro	A-D-PHexomutase_a/b/a-I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	A-D-PHexomutase_a/b/a-I/II/III	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	A-D-PHexomutase_a/b/a-II	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	A-D-PHexomutase_a/b/a-III	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	A-D-PHexomutase_C_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	A-D-PHexomutase_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Alpha-D-phosphohexomutase_SF	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PGM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:24645	UniProtKB/TrEMBL
MGC_CLONE	MGC:124624	IMAGE-MGC_LOAD
	MGC:156500	IMAGE-MGC_LOAD
NCBI Gene	24645	ENTREZGENE
PANTHER	PHOSPHOGLUCOMUTASE	UniProtKB/TrEMBL
	PHOSPHOGLUCOMUTASE 1	UniProtKB/TrEMBL
	PHOSPHOGLUCOMUTASE-1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR22573	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	PGM_PMM_I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PGM_PMM_II	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PGM_PMM_III	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Pgm1	PhenoGen
PRINTS	PGMPMM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	PGM_PMM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000009889	RatGTEx
Superfamily-SCOP	SSF53738	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF55957	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZRI9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AV00	ENTREZGENE, UniProtKB/TrEMBL
	A1A5L2_RAT	UniProtKB/TrEMBL
	A6JRM5	ENTREZGENE, UniProtKB/TrEMBL
	F7F2L9	ENTREZGENE, UniProtKB/TrEMBL
	P38652	ENTREZGENE, UniProtKB/Swiss-Prot
	Q499Q4	ENTREZGENE
	Q62752_RAT	UniProtKB/TrEMBL
UniProt Secondary	Q499Q4	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Pgm1	Phosphoglucomutase 1			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_protein	58 kDa	724639
gene_regulation	substrate for Ca2+/calmodulindependent protein kinase; ADP-ribosylation increased in liver by long-term alcohol intake	724639

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)