D5Rat13 Marker Search Result - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

Marker: D5Rat13

Symbol: D5Rat13
Previously known as: oxsts7150; R014-C03; R0014-C03; 
RGD ID: 35144
Expected Size: 163 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8578,175,842 - 78,176,005 (+)Marker Load Pipeline
mRatBN7.2573,380,762 - 73,380,925 (+)MAPPERmRatBN7.2
Rnor_6.0575,709,930 - 75,710,092NCBIRnor6.0
Rnor_5.0579,857,513 - 79,857,675UniSTSRnor5.0
RGSC_v3.4576,605,417 - 76,605,580RGDRGSC3.4
RGSC_v3.4576,605,418 - 76,605,580UniSTSRGSC3.4
RGSC_v3.1576,610,530 - 76,610,693RGD
Celera572,204,679 - 72,204,851UniSTS
RH 3.4 Map5500.9UniSTS
RH 3.4 Map5500.9RGD
RH 2.0 Map5358.0RGD
SHRSP x BN Map542.3499RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Pur21  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer CAACACTGAAGAGACTTGTCAGG
Reverse Primer ACCCCTGCTCGCTCTTAAAT
 
Template 
GNNAAGGTCGATCTAGAGGATCCCCCAGTGGTTAGCAAGCAACACTGAAGAGACTTGTCAGGTT
ATATTTATATATCTGTGTGTGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTATGTGTGTGTGTGTTGTGTGTAGCAACAATGATTAAAGAAGAGGAGGCTGTG
AAATTTAAGAGCGAGCAGGGGTGGGTATTGAAGAGATTAGAGGGGGAATGTAATTATGTCTTCA
TTAACTTTTTCAAATTAAAAAAAAAGAATGTGACTTTAATCATATCTAAATCGGAGCAGACTAT
CAATCCACATACTCCACTCTGGGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTC
CTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAA
AGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTC
CAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCANCGCGCGGGGAGAGGCGGTT
TGCGTATTGGGCGCAGGGTGGTTTTCTTTCACCAGTGGACGGGGAACACTGNTTGNCTCACGCT
GGGCNGAGNAGTTGAGNACGGCCANCTGGGTNTCCCACANGNNAAT
Strain, Expected Size(s)

AVN/Orl 172 BBDP/Rhw 172 BBDR/Rhw 172
BC/CpbU 172 BDIX/Han 172 BDVII/Cub 172
BN-Lx/Cub 162 BN/SsNHsd 162 BP/Cub 172
BUF/Pit 172 COP/OlaHsd 172 DA/PitN 172
DON/Melb 162 F344/Pit 162 FHH/Eur 162
GH/Omr 176 GK/KyoSwe 170 IS/Kyo 168
LE/Mol 172 LEW/Pit 172 LH/Mav 172
LN/Mav 172 LOU/CHan 172 M520/N 176
MHS/Gib 172 MNR/N 172 MNRA/N 176
MNS/Gib 172 MR/Pit 172 NEDH/K 162
NP9 172 ODU/N 174 OKA/Wsl 174
OM/Ztm 172 P5C 172 PVG/Pit 172
SD/Rij 172 SHR/OlaHsd 174 SHRSP/Riv 174
SR/Jr 172 SS/Jr 174 WAG/RijKyo 172
WF/Pit 172 WIST/Nhg 172 WKY/OlaHsd 174
WN/N 172 WTC/Kyo 174


GenBank Nucleotide CH474039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat

1 to 10 of 42 rows


Database
Acc Id
Source(s)
NCBI Gene 100381189 UniSTS