![]()
Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Frmd3 | Rat | triple-receptor negative breast cancer | | ISS | Frmd3 (Mus musculus) | 13592920 | | MouseDO | | |
|
![]()
Imported Disease Annotations - MGIObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Frmd3 | Rat | triple-receptor negative breast cancer | | ISS | Frmd3 (Mus musculus) | 13592920 | | MouseDO | | |
|
|
# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
Frmd3 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FRMD3 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Frmd3 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Frmd3 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FRMD3 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FRMD3 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Frmd3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FRMD3 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
FRMD3 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Frmd3 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Frmd3
2293 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH143464 |
|
||||||||||||||||||||||||||||||||||||||||
BF386333 |
|
alimentary part of gastrointestinal system
|
appendage
|
circulatory system
|
ectoderm
|
endocrine system
|
endoderm
|
exocrine system
|
hemolymphoid system
|
hepatobiliary system
|
integumental system
|
mesenchyme
|
mesoderm
|
musculoskeletal system
|
nervous system
|
renal system
|
reproductive system
|
respiratory system
|
sensory system
|
visual system
|
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15 | 12 | 66 | 144 | 53 | 52 | 24 | 26 | 24 | 6 | 223 | 123 | 11 | 125 | 53 | 92 | 28 | 17 | 17 |
RefSeq Transcripts | NM_001415819 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001415820 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039109494 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287360 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | CH473978 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
JAXUCZ010000005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000065792 ⟹ ENSRNOP00000060245 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
Ensembl Acc Id: | ENSRNOT00000099661 ⟹ ENSRNOP00000081802 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
Ensembl Acc Id: | ENSRNOT00000100906 ⟹ ENSRNOP00000095070 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | NM_001415819 ⟹ NP_001402748 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | NM_001415820 ⟹ NP_001402749 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039109494 ⟹ XP_038965422 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_063287360 ⟹ XP_063143430 | ||||||||
Type: | CODING | ||||||||
Position: |
|
Protein RefSeqs | NP_001402748 | (Get FASTA) | NCBI Sequence Viewer |
NP_001402749 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038965422 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143430 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | EDM10492 | (Get FASTA) | NCBI Sequence Viewer |
Ensembl Protein | ENSRNOP00000060245.4 | ||
ENSRNOP00000081802 | |||
ENSRNOP00000081802.1 | |||
ENSRNOP00000095070 | |||
ENSRNOP00000095070.1 |
Ensembl Acc Id: | ENSRNOP00000060245 ⟸ ENSRNOT00000065792 |
RefSeq Acc Id: | XP_038965422 ⟸ XM_039109494 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A6J815 (UniProtKB/TrEMBL), D3ZR47 (UniProtKB/TrEMBL) |
Ensembl Acc Id: | ENSRNOP00000081802 ⟸ ENSRNOT00000099661 |
Ensembl Acc Id: | ENSRNOP00000095070 ⟸ ENSRNOT00000100906 |
RefSeq Acc Id: | NP_001402749 ⟸ NM_001415820 |
- Peptide Label: | isoform 2 |
- UniProtKB: | A0A8I6AMS8 (UniProtKB/TrEMBL), A6J815 (UniProtKB/TrEMBL), D3ZR47 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | NP_001402748 ⟸ NM_001415819 |
- Peptide Label: | isoform 1 |
- UniProtKB: | A0A8I5ZT99 (UniProtKB/TrEMBL), A6J815 (UniProtKB/TrEMBL), D3ZR47 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_063143430 ⟸ XM_063287360 |
- Peptide Label: | isoform X2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-D3ZR47-F1-model_v2 | AlphaFold | D3ZR47 | 1-500 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
Database | Acc Id | Source(s) |
AGR Gene | RGD:1304802 | AgrOrtholog |
BioCyc Gene | G2FUF-40967 | BioCyc |
Ensembl Genes | ENSRNOG00000006503 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000065792.4 | UniProtKB/TrEMBL |
ENSRNOT00000099661 | ENTREZGENE | |
ENSRNOT00000099661.1 | UniProtKB/TrEMBL | |
ENSRNOT00000100906 | ENTREZGENE | |
ENSRNOT00000100906.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.20.80.10 | UniProtKB/TrEMBL |
2.30.29.30 | UniProtKB/TrEMBL | |
Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 | UniProtKB/TrEMBL | |
InterPro | Band_41_domain | UniProtKB/TrEMBL |
Ez/rad/moesin-like | UniProtKB/TrEMBL | |
FERM-adjacent | UniProtKB/TrEMBL | |
FERM/acyl-CoA-bd_prot_3-hlx | UniProtKB/TrEMBL | |
FERM_2 | UniProtKB/TrEMBL | |
FERM_central | UniProtKB/TrEMBL | |
FERM_CS | UniProtKB/TrEMBL | |
FERM_domain | UniProtKB/TrEMBL | |
FERM_N | UniProtKB/TrEMBL | |
FERM_PH-like_C | UniProtKB/TrEMBL | |
PH_type | UniProtKB/TrEMBL | |
Ubiquitin-rel_dom | UniProtKB/TrEMBL | |
NCBI Gene | 298141 | ENTREZGENE |
PANTHER | 4.1 G PROTEIN | UniProtKB/TrEMBL |
FERM DOMAIN-CONTAINING PROTEIN 3 | UniProtKB/TrEMBL | |
Pfam | FERM_C | UniProtKB/TrEMBL |
FERM_M | UniProtKB/TrEMBL | |
FERM_N | UniProtKB/TrEMBL | |
PF08736 | UniProtKB/TrEMBL | |
PhenoGen | Frmd3 | PhenoGen |
PRINTS | BAND41 | UniProtKB/TrEMBL |
ERMFAMILY | UniProtKB/TrEMBL | |
PROSITE | FERM_1 | UniProtKB/TrEMBL |
FERM_3 | UniProtKB/TrEMBL | |
RatGTEx | ENSRNOG00000006503 | RatGTEx |
SMART | B41 | UniProtKB/TrEMBL |
FERM_C | UniProtKB/TrEMBL | |
SM01195 | UniProtKB/TrEMBL | |
Superfamily-SCOP | FERM_3-hlx | UniProtKB/TrEMBL |
PH domain-like | UniProtKB/TrEMBL | |
SSF54236 | UniProtKB/TrEMBL | |
UniProt | A0A8I5ZT99 | ENTREZGENE, UniProtKB/TrEMBL |
A0A8I6AMS8 | ENTREZGENE, UniProtKB/TrEMBL | |
A6J815 | ENTREZGENE, UniProtKB/TrEMBL | |
D3ZR47 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2008-04-30 | Frmd3 | FERM domain containing 3 | Frmd3_predicted | FERM domain containing 3 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Frmd3_predicted | FERM domain containing 3 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |