Zfp189 (zinc finger protein 189) - Rat Genome Database

Name: Zfp189
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp189 (zinc finger protein 189) Rattus norvegicus

Analyze

Symbol:

Zfp189

Name:

zinc finger protein 189

RGD ID:

1306510

Description:

Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human ZNF189 (zinc finger protein 189); INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC313219

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF189 (zinc finger protein 189)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp189 (zinc finger protein 189)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Znf189 (zinc finger protein 189)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF189 (zinc finger protein 189)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF189 (zinc finger protein 189)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf189 (zinc finger protein 189)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF189 (zinc finger protein 189)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ZNF189 (zinc finger protein 189)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf189 (zinc finger protein 189)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF189 (zinc finger protein 189)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Zfp189 (zinc finger protein 189)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	Y55F3AM.14	Alliance	DIOPT (Hieranoid\|InParanoid)
Drosophila melanogaster (fruit fly):	CG5245	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|PANTHER)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	63,872,596 - 63,884,348 (+)	NCBI
Rnor_6.0 Ensembl	5	64,789,456 - 64,800,810 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	64,789,432 - 64,801,079 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	69,280,812 - 69,292,492 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	66,266,848 - 66,278,203 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	66,272,310 - 66,283,349 (+)	NCBI
Celera	5	63,723,898 - 63,735,254 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP,ISO)

aflatoxin M1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

carmustine (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

endosulfan (EXP)

geraniol (ISO)

indometacin (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methamphetamine (EXP)

methapyrilene (EXP)

methotrexate (EXP)

Methylazoxymethanol acetate (EXP)

paracetamol (EXP,ISO)

quercetin (ISO)

SCH 23390 (EXP)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (EXP)

tioguanine (EXP)

urethane (ISO)

valdecoxib (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA)

Molecular Function

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	MGD data from the GO Consortium
4.	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Zfp189
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	63,872,596 - 63,884,348 (+)	NCBI
Rnor_6.0 Ensembl	5	64,789,456 - 64,800,810 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	64,789,432 - 64,801,079 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	69,280,812 - 69,292,492 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	66,266,848 - 66,278,203 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	66,272,310 - 66,283,349 (+)	NCBI
Celera	5	63,723,898 - 63,735,254 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

ZNF189
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	9	101,398,873 - 101,410,660 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	9	101,398,830 - 101,410,655 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	104,161,133 - 104,172,936 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	9	104,161,136 - 104,172,942 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	103,200,984 - 103,212,763 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	101,240,717 - 101,252,497	NCBI
Celera	9	74,674,768 - 74,686,547 (+)	NCBI
Cytogenetic Map	9	q31.1	NCBI
HuRef	9	73,760,586 - 73,772,393 (+)	NCBI		HuRef
CHM1_1	9	104,307,549 - 104,319,358 (+)	NCBI		CHM1_1

Zfp189
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	49,521,176 - 49,531,558 (+)	NCBI	GRCm39		mm39
GRCm38	4	49,521,176 - 49,531,558 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	49,521,176 - 49,531,517 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	49,534,089 - 49,544,417 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	49,542,326 - 49,552,641 (+)	NCBI			mm8
Celera	4	49,549,471 - 49,559,799 (+)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI

Znf189
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	24,404,827 - 24,416,093 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	24,403,858 - 24,416,395 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF189
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	100,601,555 - 100,613,409 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	100,601,561 - 100,613,409 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	9	72,607,439 - 72,619,319 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

ZNF189
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	11	58,129,001 - 58,140,713 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	11	58,129,654 - 58,141,727 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Znf189
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936524	9,564,599 - 9,575,783 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF189
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	243,106,972 - 243,118,344 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	243,106,911 - 243,117,929 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	271,660,787 - 271,718,975 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF189
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	38,030,256 - 38,042,169 (-)	NCBI

Znf189
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624758	9,888,113 - 9,900,933 (-)	NCBI

Position Markers

RH131427

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	5	64,800,465 - 64,800,647	NCBI	Rnor6.0
Rnor_5.0	5	69,291,878 - 69,292,060	UniSTS	Rnor5.0
RGSC_v3.4	5	66,277,858 - 66,278,040	UniSTS	RGSC3.4
Celera	5	63,724,061 - 63,724,243	UniSTS
RH 3.4 Map	5	423.9	UniSTS
Cytogenetic Map	5	q22	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	89432042	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	93273395	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	136640934	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	1525098	78720537	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	1666587	71552720	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9514842	103580403	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12651967	117554267	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18847913	76608178	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21904363	66904363	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	29078899	74078899	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	29078899	74078899	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	29641661	74641661	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	29641661	74641661	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31926122	136640934	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	34402409	79402409	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	34402409	79402409	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	34402409	79402409	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	35225432	108092802	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	35661945	117554267	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35788756	70742105	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35788756	147487820	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40777918	154732375	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44404276	89432042	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	44404276	134502294	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	47745646	167946134	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	48722038	93587756	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	51418671	147487820	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	51804426	96804426	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	51804426	96804426	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	53309568	98309568	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	55903593	100903593	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	56902367	101902367	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	56991667	137729065	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	60072951	133313852	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	61086525	149030144	Rat
2316954	Rf57	Renal function QTL 57	0		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	61086653	93273130	Rat
2316957	Pur21	Proteinuria QTL 21	6.2		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	5	61086653	117554114	Rat
61386	Bp49	Blood pressure QTL 49	16.6		cerebrum integrity trait (VT:0010549)	brain infarction volume (CMO:0001013)	5	61612600	102331727	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	61612600	168109659	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	482
Count of miRNA genes:	261
Interacting mature miRNAs:	322
Transcripts:	ENSRNOT00000009584
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		2	38	25	17	25			62	22	39	8
Low	3	41	19	16	2	16	8	11	12	13	2	3	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC111278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000009584 ⟹ ENSRNOP00000009584

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	64,789,456 - 64,800,810 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000078502 ⟹ ENSRNOP00000071391

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	64,790,186 - 64,800,240 (+)	Ensembl

RefSeq Acc Id:

NM_001107930 ⟹ NP_001101400

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	63,872,729 - 63,884,083 (+)	NCBI
Rnor_6.0	5	64,789,456 - 64,800,810 (+)	NCBI
Rnor_5.0	5	69,280,812 - 69,292,492 (+)	NCBI
RGSC_v3.4	5	66,266,848 - 66,278,203 (+)	RGD
Celera	5	63,723,898 - 63,735,254 (-)	RGD

Sequence:

show sequence

GTAGTTAGACAGGTTCCGCGTAGGCTCCGGGTAACGCCTTCTGGTCCGGGGGTGGTCGGTAGTA
GTGCAGCTTGACTTTGAGGCGGAGGACTTGGCAACAAGGAGGAGATATTACAGGGAGGCCCGAA
GGGCTAGGCAGCGGGGCAGCGGGGCAGCGGACGGGGTTTGGGGCTGGAGAACAGCCAGACAGAA
TGTCTGATATGCCCCTGGGAACTTGACCGCTCCGAGACAGAGGCAGGACCTCACCAGACCCATC
CAGTGAGCCCCTTCTCGCCGGGCCTTATTTCGAGCAACCATCTAGGCCTCATCAGAGCCCCAAT
GCTGTGTGGCTGCTATTCCTGAAGGAGGCGATGGCGTCCCCAAGCCCACCGCTGGAGTCAAAGG
AGGAGTGGGGTTATCTGGATGCAGCTCCGAGAAGCCTGTATAAAGATGTCGTGATGGACAGTTA
TGGAAAGCTGGTCTCGCTGGATGTTTTAAACAGAAATGAAGATGAAGAGCCAACTGTGAAAGAA
GAAATTGAGAAAGACATCGAACCACAGGGTATAATAGTTACAAGAATCAAAAGTGAACTTGATC
AGGATCCTATGGGTAGCGAAACCTTTGAACTTGTTGGTAGGTTAGATAAACAAAGAGGAATCTT
CTTATGGGAAATACCACGTGATTCTTTGACTGAGGAACAGAAAATGTTCAGAGGACACACTAAT
GTTCGTAAGAGACCAAACTCTGAAGAGAAATGTCATAAATGTGAAGAATGTGGAAAACGTTTTG
TCCGCAAGGCCCATTTCATTCAGCATCAAAGGGTCCACACTGGTGAGAAACCTTTTCAGTGCAA
CGAGTGTGGAAAAAGCTTTAGTCGCAGTTCATTTGTTATTGAGCATCAGAGAATTCACACTGGG
GAACGGCCCTATGAGTGTAATTACTGTGGGAAAACCTTTAGTGTGAGCTCTACCCTTATTAGGC
ACCAGAGAATCCACACTGGGGAGAGGCCTTACCAGTGTAATCAGTGTAAACAGAGCTTCAGCCA
GAGAAGGAGTCTTGTTAAACATCAAAGAATTCACACTGGTGAGAAACCCCATAAATGTAGTGAC
TGTGGAAAAGCCTTCAGTTGGAAATCGCATCTTATTGAGCATCAGAGAACACACACTGGTGAGA
AACCCTATCACTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACACCA
GAGAATTCATACTGGGGAAAGACCTCATAAGTGTGGTGAATGTGGGAAAGCTTTTAGATTAAGT
ACATACCTTATACAACACCAAAAAATACACACTGGTGAGAAGCCCTTTCTTTGTATTGAATGTG
GCAAGAGTTTCAGTCGGAGCTCATTCCTTATTGAACATCAAAGGATTCATACTGGTGAACGCCC
TTATCAGTGCCAAGAGTGTGGGAAAAGTTTCAGTCAACTTTGCAACCTTACTCGTCATCAGAGA
ATTCACACAGGAGACAAACCCCACAAGTGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAG
GTCTCATTCAGCATCAGAGAATACACATCAGGGAAAAGACTTCTCCATTCAAGGAAACTAAGGG
AAGTTTTGATCCAAACTGTGGTCTTGTTATTCAGCAGGAAGTCTACCCTAAAGAAAAATCTTAC
AAATGTGATGACTGCGGGAAAACGTTTAGTGTTAGTGCTCATCTTGTACAACATCAGAGGATCC
ACACTGGTGAGAAGCCTTACCTGTGCACCGTCTGCGGGAAAAGCTTTAGTCGGAGCTCATTTCT
TATTGAGCACCAGAGAATCCACACTGGTGAGAGACCTTATTTGTGCAGACAATGTGGCAAAAGT
TTTAGTCAACTTTGTAATCTCATCCGACATCAGGGTGTTCACACTGGTAATAAACCCCATAAAT
GTGAAGAGTGTGGGAAAGCCTTTAGTAGGAACTCAGGTCTCATTCAGCACCAGAGAATACACAC
AGGAGAGAAACCTTATAGGTGTGAAAAATGTGACAAAAGTTTCAGTCAACAGCGAAGCCTTGTC
AACCATCAGAAGATCCATGCGGAAGTGAAAACCCAAGAAATTTATGAATGTGACGCTTGCGGCG
AAGCCTTCACTTGTCAGATTTCTCTAATTCAGCATCAAAAGTTACATATTATGTGGATGCAGTA
AAATTAGAGATATTTTAATGCTCAAATTTGAGACTAGCTACCGAAGTGCAGTTTTAGTATGGCC
CAACATGGGTCAAATATAGTGATAAAGCAAATACTTGTTGGCCTCATGAAAAATGGTTTCTAAA
GATCTATGGATAGTGGACAATGCCTGGGGGAAACTGACTTGCGATTACTAGTTGCTTTCATAGC
CACAGAGATCTGTTGTTGATTTAGCTAACCTTTCAGTAGAGCTGACTGGGCAAAGCATATGGGA
ACGGTTCTGAAGGACACAGTGAAATCAGTGTACGGGAACTGGGAGCAACTGATCCTGGGAAGCT
AGGGCTAATTCAGAAGTCTTCTATTAGCACCTCCTGCAGTTGCTCTTCAGTACCATGAAGTTAG
GCTAGACACGTCAAACCTCAGTGATTGGGCAATGTAATCTGTGGAAGCCCAGATACTCTCAAAG
TCATCAAACAGTGTTTATAACTGTCAAAGAAATTTGTGTGGAAAATTTCTCCAGGGCTTCCCAG
GTTGATAAAAGGCATGAATTATTAAGTTGTAAAGGTACTTGTTAGTGTTAACAACCAATTAAGG
TGTTACCAAGGAATCTTTGGGAGTGCCTTCCCCTGAGCCCCAAAATGGGCCCCAAAAGATAATT
ACTGATTTATTTTGTGCTGTCTCATCTGTGAAACCTCTTTGTAATACTGTATCAACATTACTTT
ATTATTCCCACATAATCAGGAACATGTAAACATGTACGTATTTTAATTACCAAGAATTGGAAAT
A

hide sequence

RefSeq Acc Id:

XM_006238157 ⟹ XP_006238219

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	63,872,596 - 63,884,348 (+)	NCBI
Rnor_6.0	5	64,789,432 - 64,801,079 (+)	NCBI
Rnor_5.0	5	69,280,812 - 69,292,492 (+)	NCBI

Sequence:

show sequence

CGCTCCGTGGGCATGTTGGGAGTTGTAGTTAGACAGGTTCCGCGTAGGCTCCGGGTAACGCCTT
CTGGTCCGGGGGTGGTCGGTAGTAGTGCAGCTTGACTTTGAGGCGGAGGACTTGGCAACAAGGA
GGAGATATTACAGGGAGGCCCGAAGGGCTAGGCAGCGGGGCAGCGGGGCAGCGGACGGGGTTTG
GGGCTGGAGAACAGCCAGACAGAATGTCTGATATGCCCCTGGGAACTTGACCGCTCCGAGACAG
AGGCAGGACCTCACCAGACCCATCCAGTGAGCCCCTTCTCGCCGGGCCTTATTTCGAGCAACCA
TCTAGGCCTCATCAGAGCCCCAATGCTGTGTGGCTGCTATTCCTGAAGGAGGCGATGGCGTCCC
CAAGCCCACCGCTGGAGTCAAAGCTGGCACAATGTCTGGACTCAAGGAGGAGTGGGGTTATCTG
GATGCAGCTCCGAGAAGCCTGTATAAAGATGTCGTGATGGACAGTTATGGAAAGCTGGTCTCGC
TGGATGTTTTAAACAGAAATGAAGATGAAGAGCCAACTGTGAAAGAAGAAATTGAGAAAGACAT
CGAACCACAGGGTATAATAGTTACAAGAATCAAAAGTGAACTTGATCAGGATCCTATGGGTAGC
GAAACCTTTGAACTTGTTGGTAGGTTAGATAAACAAAGAGGAATCTTCTTATGGGAAATACCAC
GTGATTCTTTGACTGAGGAACAGAAAATGTTCAGAGGACACACTAATGTTCGTAAGAGACCAAA
CTCTGAAGAGAAATGTCATAAATGTGAAGAATGTGGAAAACGTTTTGTCCGCAAGGCCCATTTC
ATTCAGCATCAAAGGGTCCACACTGGTGAGAAACCTTTTCAGTGCAACGAGTGTGGAAAAAGCT
TTAGTCGCAGTTCATTTGTTATTGAGCATCAGAGAATTCACACTGGGGAACGGCCCTATGAGTG
TAATTACTGTGGGAAAACCTTTAGTGTGAGCTCTACCCTTATTAGGCACCAGAGAATCCACACT
GGGGAGAGGCCTTACCAGTGTAATCAGTGTAAACAGAGCTTCAGCCAGAGAAGGAGTCTTGTTA
AACATCAAAGAATTCACACTGGTGAGAAACCCCATAAATGTAGTGACTGTGGAAAAGCCTTCAG
TTGGAAATCGCATCTTATTGAGCATCAGAGAACACACACTGGTGAGAAACCCTATCACTGTACC
AAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACACCAGAGAATTCATACTGGGG
AAAGACCTCATAAGTGTGGTGAATGTGGGAAAGCTTTTAGATTAAGTACATACCTTATACAACA
CCAAAAAATACACACTGGTGAGAAGCCCTTTCTTTGTATTGAATGTGGCAAGAGTTTCAGTCGG
AGCTCATTCCTTATTGAACATCAAAGGATTCATACTGGTGAACGCCCTTATCAGTGCCAAGAGT
GTGGGAAAAGTTTCAGTCAACTTTGCAACCTTACTCGTCATCAGAGAATTCACACAGGAGACAA
ACCCCACAAGTGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTCTCATTCAGCATCAG
AGAATACACATCAGGGAAAAGACTTCTCCATTCAAGGAAACTAAGGGAAGTTTTGATCCAAACT
GTGGTCTTGTTATTCAGCAGGAAGTCTACCCTAAAGAAAAATCTTACAAATGTGATGACTGCGG
GAAAACGTTTAGTGTTAGTGCTCATCTTGTACAACATCAGAGGATCCACACTGGTGAGAAGCCT
TACCTGTGCACCGTCTGCGGGAAAAGCTTTAGTCGGAGCTCATTTCTTATTGAGCACCAGAGAA
TCCACACTGGTGAGAGACCTTATTTGTGCAGACAATGTGGCAAAAGTTTTAGTCAACTTTGTAA
TCTCATCCGACATCAGGGTGTTCACACTGGTAATAAACCCCATAAATGTGAAGAGTGTGGGAAA
GCCTTTAGTAGGAACTCAGGTCTCATTCAGCACCAGAGAATACACACAGGAGAGAAACCTTATA
GGTGTGAAAAATGTGACAAAAGTTTCAGTCAACAGCGAAGCCTTGTCAACCATCAGAAGATCCA
TGCGGAAGTGAAAACCCAAGAAATTTATGAATGTGACGCTTGCGGCGAAGCCTTCACTTGTCAG
ATTTCTCTAATTCAGCATCAAAAGTTACATATTATGTGGATGCAGTAAAATTAGAGATATTTTA
ATGCTCAAATTTGAGACTAGCTACCGAAGTGCAGTTTTAGTATGGCCCAACATGGGTCAAATAT
AGTGATAAAGCAAATACTTGTTGGCCTCATGAAAAATGGTTTCTAAAGATCTATGGATAGTGGA
CAATGCCTGGGGGAAACTGACTTGCGATTACTAGTTGCTTTCATAGCCACAGAGATCTGTTGTT
GATTTAGCTAACCTTTCAGTAGAGCTGACTGGGCAAAGCATATGGGAACGGTTCTGAAGGACAC
AGTGAAATCAGTGTACGGGAACTGGGAGCAACTGATCCTGGGAAGCTAGGGCTAATTCAGAAGT
CTTCTATTAGCACCTCCTGCAGTTGCTCTTCAGTACCATGAAGTTAGGCTAGACACGTCAAACC
TCAGTGATTGGGCAATGTAATCTGTGGAAGCCCAGATACTCTCAAAGTCATCAAACAGTGTTTA
TAACTGTCAAAGAAATTTGTGTGGAAAATTTCTCCAGGGCTTCCCAGGTTGATAAAAGGCATGA
ATTATTAAGTTGTAAAGGTACTTGTTAGTGTTAACAACCAATTAAGGTGTTACCAAGGAATCTT
TGGGAGTGCCTTCCCCTGAGCCCCAAAATGGGCCCCAAAAGATAATTACTGATTTATTTTGTGC
TGTCTCATCTGTGAAACCTCTTTGTAATACTGTATCAACATTACTTTATTATTCCCACATAATC
AGGAACATGTAAACATGTACGTATTTTAATTACCAAGAATTGGAAATAATAATAAAAAAAATGA
CCTAAAATGTATGCTAGAGAGCTGAGATATTTTGGTATTCTTTAGGTCTTATGGTAGATTTGCA
TGTAAGATTTAAATTCTTATTTCTTGATCCTCGGTCCTCCTTTAGTTAACACGCATATGCCTAT
TTACCTACTTTAATCATTAAACCTGTTTGGTGTTTTGGTTTGTGCAGTATTAGTTGCTTTAGGA
TAATAACACTAATGGACTACTGTGTTTTGAACTTCAGAATCAAAGATTTGAAAGAAACTTC

hide sequence

RefSeq Acc Id:

XM_008763711 ⟹ XP_008761933

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	64,790,212 - 64,801,079 (+)	NCBI

Sequence:

show sequence

GCTTAGAAAACCTAATGGAATTGAGTCAAATTGGGTCACAAGCTGCTGTGGGTAGAGCCTTGGG
GCGGACAGCGGGGCCAGGGAAGGTTGGGCAGGTCTTGAGGCTGTTGTGTAATAACTAAAGCAGA
GAAGACCTTCAGTTTGGAAGGCACGGATCCAGATCAGTTCTTTTCCAGTCTGAGGCGCCATGAA
TCGGGCACCTTTTGGTACTCGCTCACTTACCGTGTCCCTCCCAGTGAATGGGAGAGCATGGAGG
AGTGGGGTTATCTGGATGCAGCTCCGAGAAGCCTGTATAAAGATGTCGTGATGGACAGTTATGG
AAAGCTGGTCTCGCTGGATGTTTTAAACAGAAATGAAGATGAAGAGCCAACTGTGAAAGAAGAA
ATTGAGAAAGACATCGAACCACAGGGTATAATAGTTACAAGAATCAAAAGTGAACTTGATCAGG
ATCCTATGGGTAGCGAAACCTTTGAACTTGTTGGTAGGTTAGATAAACAAAGAGGAATCTTCTT
ATGGGAAATACCACGTGATTCTTTGACTGAGGAACAGAAAATGTTCAGAGGACACACTAATGTT
CGTAAGAGACCAAACTCTGAAGAGAAATGTCATAAATGTGAAGAATGTGGAAAACGTTTTGTCC
GCAAGGCCCATTTCATTCAGCATCAAAGGGTCCACACTGGTGAGAAACCTTTTCAGTGCAACGA
GTGTGGAAAAAGCTTTAGTCGCAGTTCATTTGTTATTGAGCATCAGAGAATTCACACTGGGGAA
CGGCCCTATGAGTGTAATTACTGTGGGAAAACCTTTAGTGTGAGCTCTACCCTTATTAGGCACC
AGAGAATCCACACTGGGGAGAGGCCTTACCAGTGTAATCAGTGTAAACAGAGCTTCAGCCAGAG
AAGGAGTCTTGTTAAACATCAAAGAATTCACACTGGTGAGAAACCCCATAAATGTAGTGACTGT
GGAAAAGCCTTCAGTTGGAAATCGCATCTTATTGAGCATCAGAGAACACACACTGGTGAGAAAC
CCTATCACTGTACCAAATGCAAGAAAAGCTTTAGTCGAAACTCACTGCTTGTTGAACACCAGAG
AATTCATACTGGGGAAAGACCTCATAAGTGTGGTGAATGTGGGAAAGCTTTTAGATTAAGTACA
TACCTTATACAACACCAAAAAATACACACTGGTGAGAAGCCCTTTCTTTGTATTGAATGTGGCA
AGAGTTTCAGTCGGAGCTCATTCCTTATTGAACATCAAAGGATTCATACTGGTGAACGCCCTTA
TCAGTGCCAAGAGTGTGGGAAAAGTTTCAGTCAACTTTGCAACCTTACTCGTCATCAGAGAATT
CACACAGGAGACAAACCCCACAAGTGTGAGGAATGTGGAAAAGCCTTCAGTAGAAGCTCAGGTC
TCATTCAGCATCAGAGAATACACATCAGGGAAAAGACTTCTCCATTCAAGGAAACTAAGGGAAG
TTTTGATCCAAACTGTGGTCTTGTTATTCAGCAGGAAGTCTACCCTAAAGAAAAATCTTACAAA
TGTGATGACTGCGGGAAAACGTTTAGTGTTAGTGCTCATCTTGTACAACATCAGAGGATCCACA
CTGGTGAGAAGCCTTACCTGTGCACCGTCTGCGGGAAAAGCTTTAGTCGGAGCTCATTTCTTAT
TGAGCACCAGAGAATCCACACTGGTGAGAGACCTTATTTGTGCAGACAATGTGGCAAAAGTTTT
AGTCAACTTTGTAATCTCATCCGACATCAGGGTGTTCACACTGGTAATAAACCCCATAAATGTG
AAGAGTGTGGGAAAGCCTTTAGTAGGAACTCAGGTCTCATTCAGCACCAGAGAATACACACAGG
AGAGAAACCTTATAGGTGTGAAAAATGTGACAAAAGTTTCAGTCAACAGCGAAGCCTTGTCAAC
CATCAGAAGATCCATGCGGAAGTGAAAACCCAAGAAATTTATGAATGTGACGCTTGCGGCGAAG
CCTTCACTTGTCAGATTTCTCTAATTCAGCATCAAAAGTTACATATTATGTGGATGCAGTAAAA
TTAGAGATATTTTAATGCTCAAATTTGAGACTAGCTACCGAAGTGCAGTTTTAGTATGGCCCAA
CATGGGTCAAATATAGTGATAAAGCAAATACTTGTTGGCCTCATGAAAAATGGTTTCTAAAGAT
CTATGGATAGTGGACAATGCCTGGGGGAAACTGACTTGCGATTACTAGTTGCTTTCATAGCCAC
AGAGATCTGTTGTTGATTTAGCTAACCTTTCAGTAGAGCTGACTGGGCAAAGCATATGGGAACG
GTTCTGAAGGACACAGTGAAATCAGTGTACGGGAACTGGGAGCAACTGATCCTGGGAAGCTAGG
GCTAATTCAGAAGTCTTCTATTAGCACCTCCTGCAGTTGCTCTTCAGTACCATGAAGTTAGGCT
AGACACGTCAAACCTCAGTGATTGGGCAATGTAATCTGTGGAAGCCCAGATACTCTCAAAGTCA
TCAAACAGTGTTTATAACTGTCAAAGAAATTTGTGTGGAAAATTTCTCCAGGGCTTCCCAGGTT
GATAAAAGGCATGAATTATTAAGTTGTAAAGGTACTTGTTAGTGTTAACAACCAATTAAGGTGT
TACCAAGGAATCTTTGGGAGTGCCTTCCCCTGAGCCCCAAAATGGGCCCCAAAAGATAATTACT
GATTTATTTTGTGCTGTCTCATCTGTGAAACCTCTTTGTAATACTGTATCAACATTACTTTATT
ATTCCCACATAATCAGGAACATGTAAACATGTACGTATTTTAATTACCAAGAATTGGAAATAAT
AATAAAAAAAATGACCTAAAATGTATGCTAGAGAGCTGAGATATTTTGGTATTCTTTAGGTCTT
ATGGTAGATTTGCATGTAAGATTTAAATTCTTATTTCTTGATCCTCGGTCCTCCTTTAGTTAAC
ACGCATATGCCTATTTACCTACTTTAATCATTAAACCTGTTTGGTGTTTTGGTTTGTGCAGTAT
TAGTTGCTTTAGGATAATAACACTAATGGACTACTGTGTTTTGAACTTCAGAATCAAAGATTTG
AAAGAAACTTC

hide sequence

RefSeq Acc Id:

XM_039109853 ⟹ XP_038965781

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	63,873,865 - 63,884,348 (+)	NCBI

RefSeq Acc Id:

XM_039109854 ⟹ XP_038965782

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	63,873,971 - 63,884,348 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101400	(Get FASTA)	NCBI Sequence Viewer
	XP_006238219	(Get FASTA)	NCBI Sequence Viewer
	XP_038965781	(Get FASTA)	NCBI Sequence Viewer
	XP_038965782	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78181	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101400 ⟸ NM_001107930

- UniProtKB:

D3ZRX1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASPSPPLESKEEWGYLDAAPRSLYKDVVMDSYGKLVSLDVLNRNEDEEPTVKEEIEKDIEPQG
IIVTRIKSELDQDPMGSETFELVGRLDKQRGIFLWEIPRDSLTEEQKMFRGHTNVRKRPNSEEK
CHKCEECGKRFVRKAHFIQHQRVHTGEKPFQCNECGKSFSRSSFVIEHQRIHTGERPYECNYCG
KTFSVSSTLIRHQRIHTGERPYQCNQCKQSFSQRRSLVKHQRIHTGEKPHKCSDCGKAFSWKSH
LIEHQRTHTGEKPYHCTKCKKSFSRNSLLVEHQRIHTGERPHKCGECGKAFRLSTYLIQHQKIH
TGEKPFLCIECGKSFSRSSFLIEHQRIHTGERPYQCQECGKSFSQLCNLTRHQRIHTGDKPHKC
EECGKAFSRSSGLIQHQRIHIREKTSPFKETKGSFDPNCGLVIQQEVYPKEKSYKCDDCGKTFS
VSAHLVQHQRIHTGEKPYLCTVCGKSFSRSSFLIEHQRIHTGERPYLCRQCGKSFSQLCNLIRH
QGVHTGNKPHKCEECGKAFSRNSGLIQHQRIHTGEKPYRCEKCDKSFSQQRSLVNHQKIHAEVK
TQEIYECDACGEAFTCQISLIQHQKLHIMWMQ

hide sequence

RefSeq Acc Id:	XP_006238219 ⟸ XM_006238157
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K0C7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSGLKEEWGYLDAAPRSLYKDVVMDSYGKLVSLDVLNRNEDEEPTVKEEIEKDIEPQGIIVTRI KSELDQDPMGSETFELVGRLDKQRGIFLWEIPRDSLTEEQKMFRGHTNVRKRPNSEEKCHKCEE CGKRFVRKAHFIQHQRVHTGEKPFQCNECGKSFSRSSFVIEHQRIHTGERPYECNYCGKTFSVS STLIRHQRIHTGERPYQCNQCKQSFSQRRSLVKHQRIHTGEKPHKCSDCGKAFSWKSHLIEHQR THTGEKPYHCTKCKKSFSRNSLLVEHQRIHTGERPHKCGECGKAFRLSTYLIQHQKIHTGEKPF LCIECGKSFSRSSFLIEHQRIHTGERPYQCQECGKSFSQLCNLTRHQRIHTGDKPHKCEECGKA FSRSSGLIQHQRIHIREKTSPFKETKGSFDPNCGLVIQQEVYPKEKSYKCDDCGKTFSVSAHLV QHQRIHTGEKPYLCTVCGKSFSRSSFLIEHQRIHTGERPYLCRQCGKSFSQLCNLIRHQGVHTG NKPHKCEECGKAFSRNSGLIQHQRIHTGEKPYRCEKCDKSFSQQRSLVNHQKIHAEVKTQEIYE CDACGEAFTCQISLIQHQKLHIMWMQ hide sequence

RefSeq Acc Id:

XP_008761933 ⟸ XM_008763711

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEEWGYLDAAPRSLYKDVVMDSYGKLVSLDVLNRNEDEEPTVKEEIEKDIEPQGIIVTRIKSEL
DQDPMGSETFELVGRLDKQRGIFLWEIPRDSLTEEQKMFRGHTNVRKRPNSEEKCHKCEECGKR
FVRKAHFIQHQRVHTGEKPFQCNECGKSFSRSSFVIEHQRIHTGERPYECNYCGKTFSVSSTLI
RHQRIHTGERPYQCNQCKQSFSQRRSLVKHQRIHTGEKPHKCSDCGKAFSWKSHLIEHQRTHTG
EKPYHCTKCKKSFSRNSLLVEHQRIHTGERPHKCGECGKAFRLSTYLIQHQKIHTGEKPFLCIE
CGKSFSRSSFLIEHQRIHTGERPYQCQECGKSFSQLCNLTRHQRIHTGDKPHKCEECGKAFSRS
SGLIQHQRIHIREKTSPFKETKGSFDPNCGLVIQQEVYPKEKSYKCDDCGKTFSVSAHLVQHQR
IHTGEKPYLCTVCGKSFSRSSFLIEHQRIHTGERPYLCRQCGKSFSQLCNLIRHQGVHTGNKPH
KCEECGKAFSRNSGLIQHQRIHTGEKPYRCEKCDKSFSQQRSLVNHQKIHAEVKTQEIYECDAC
GEAFTCQISLIQHQKLHIMWMQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000071391 ⟸ ENSRNOT00000078502

RefSeq Acc Id:

ENSRNOP00000009584 ⟸ ENSRNOT00000009584

RefSeq Acc Id:	XP_038965781 ⟸ XM_039109853
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038965782 ⟸ XM_039109854
- Peptide Label:	isoform X3

Protein Domains

C2H2-type KRAB

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693730

Promoter ID:

EPDNEW_R4255

Type:

initiation region

Name:

Zfp189_1

Description:

zinc finger protein 189

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	64,789,516 - 64,789,576	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306510	AgrOrtholog
Ensembl Genes	ENSRNOG00000006972	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009584	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000071391	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009584	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000078502	UniProtKB/TrEMBL
InterPro	KRAB_dom_sf	UniProtKB/TrEMBL
	Krueppel-associated_box	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:313219	UniProtKB/TrEMBL
NCBI Gene	313219	ENTREZGENE
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp189	PhenoGen
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Krueppel-associated_box	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K0C7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZRX1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Zfp189	zinc finger protein 189	Zfp189_predicted	zinc finger protein 189 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Zfp189_predicted	zinc finger protein 189 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)