Gene: Whrn (whirlin) Rattus norvegicus
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Symbol: Whrn
Name: whirlin
Description: ENCODES a protein that exhibits protein domain specific binding; protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); cerebellar Purkinje cell layer formation (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness 31 (ortholog); Deafness (ortholog); fundus dystrophy (ortholog); FOUND IN axon; dendrite; dendritic shaft; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 6-propyl-2-thiouracil
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CASK-interacting protein CIP98; Cip98; deafness, autosomal recessive 31; Dfnb31
Orthologs:
Homo sapiens (human) : WHRN (whirlin)  HGNC  Alliance
Mus musculus (house mouse) : Whrn (whirlin)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Whrn (whirlin)
Pan paniscus (bonobo/pygmy chimpanzee) : WHRN (whirlin)
Canis lupus familiaris (dog) : WHRN (whirlin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Whrn (whirlin)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0579,235,541 - 79,317,206 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0583,349,720 - 83,431,410 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4580,382,665 - 80,464,817 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1580,387,779 - 80,469,930 (-)NCBI
Celera575,762,917 - 75,845,137 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Whrn
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 631330
Created: 2003-08-13
Species: Rattus norvegicus
Last Modified: 2019-01-08
Status: ACTIVE