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Gene: Whrn (whirlin) Ictidomys tridecemlineatus

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Symbol:

Whrn

Name:

whirlin

RGD ID:

12449322

Description:

ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (inferred); cerebellar Purkinje cell layer formation (inferred); detection of mechanical stimulus involved in sensory perception of sound (inferred); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Aland Island eye disease (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 31 (ortholog); FOUND IN apical dendrite (ortholog); axon collateral (ortholog); dendritic shaft (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WHRN (whirlin)	NCBI	Ortholog
Mus musculus (house mouse):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	183,899,942 - 183,979,707 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	3,669,104 - 3,748,238 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	3,668,465 - 3,748,234 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Whrn	Squirrel	sensorineural hearing loss		ISO	RGD:1349509	9068941		RGD	PMID:12833159\|REF_RGD_ID:1580603
Whrn	Squirrel	sensorineural hearing loss		ISO	RGD:1553310	9068941		RGD	PMID:12833159\|REF_RGD_ID:1580603

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Whrn	Squirrel	Aland Island eye disease		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Aland island eye disease	ClinVar	PMID:25741868\|PMID:28492532\|PMID:30718709\|PMID:3442652
Whrn	Squirrel	autosomal recessive nonsyndromic deafness		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Autosomal recessive nonsyndromic deafness	ClinVar	PMID:30303587
Whrn	Squirrel	autosomal recessive nonsyndromic deafness 31		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Deafness, autosomal recessive 31 \| ClinVar Annotator: match by term: more ...	ClinVar	PMID:11973626\|PMID:12833159\|PMID:15841483\|PMID:16199547\|PMID:17576681\|PMID:20352026\|PMID:21569298\|PMID:21654738\|PMID:22135276\|PMID:22147658\|PMID:22277662\|PMID:23804846\|PMID:24033266\|PMID:25133751\|PMID:25262649\|PMID:25404053\|PMID:25468891\|PMID:25741868\|PMID:26467025\|PMID:26969326\|PMID:28492532\|PMID:30245029\|PMID:30311386\|PMID:31541171\|PMID:35114279\|PMID:9536098
Whrn	Squirrel	Deafness		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Deafness	ClinVar	PMID:30303587
Whrn	Squirrel	fundus dystrophy		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Retinal dystrophy	ClinVar	PMID:20352026\|PMID:22277662\|PMID:24033266\|PMID:25741868\|PMID:26969326\|PMID:27208204\|PMID:28492532\|PMID:30245029\|PMID:30718709\|PMID:3442652
Whrn	Squirrel	genetic disease		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Inborn genetic diseases	ClinVar	PMID:24033266\|PMID:25741868\|PMID:28492532
Whrn	Squirrel	Hearing Loss		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Hearing impairment \| ClinVar Annotator: match by term: Nonsyndromic Hearing more ...	ClinVar	PMID:20352026\|PMID:22135276\|PMID:23804846\|PMID:24033266\|PMID:25741868\|PMID:28492532\|PMID:30303587\|PMID:30311386
Whrn	Squirrel	optic atrophy		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Optic atrophy	ClinVar	PMID:24033266\|PMID:25741868\|PMID:28492532
Whrn	Squirrel	retinitis pigmentosa-deafness syndrome		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Retinitis pigmentosa-deafness syndrome	ClinVar	PMID:21569298\|PMID:24033266\|PMID:25741868\|PMID:28492532
Whrn	Squirrel	Usher syndrome		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: Hallgren syndrome \| ClinVar Annotator: match by term: Usher syndrome	ClinVar	PMID:11973626\|PMID:12833159\|PMID:15841483\|PMID:21569298\|PMID:22147658\|PMID:24033266\|PMID:25741868\|PMID:28492532
Whrn	Squirrel	Usher syndrome type 2D		ISO	RGD:1349509	8554872	ClinVar Annotator: match by term: USHER SYNDROME, TYPE IID \| ClinVar Annotator: match by term: more ...	ClinVar	PMID:12833159\|PMID:15841483\|PMID:16199547\|PMID:17171570\|PMID:17576681\|PMID:20352026\|PMID:21569298\|PMID:21654738\|PMID:22135276\|PMID:22147658\|PMID:22277662\|PMID:23804846\|PMID:24033266\|PMID:25262649\|PMID:25404053\|PMID:25468891\|PMID:25741868\|PMID:26467025\|PMID:26969326\|PMID:28492532\|PMID:30245029\|PMID:30311386\|PMID:35114279\|PMID:9536098

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Whrn	Squirrel	autosomal recessive nonsyndromic deafness 31		ISO	RGD:1349509	7240710		OMIM
Whrn	Squirrel	Usher syndrome type 2D		ISO	RGD:1349509	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Whrn	Squirrel	auditory receptor cell stereocilium organization	involved_in	IEA	PANTHER:PTN000563364	150520179		TreeGrafter	GO_REF:0000118
Whrn	Squirrel	auditory receptor cell stereocilium organization	acts_upstream_of_or_within	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	cerebellar Purkinje cell layer formation	involved_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	detection of mechanical stimulus involved in sensory perception of sound	involved_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	establishment of localization in cell	acts_upstream_of_or_within	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	establishment of protein localization	acts_upstream_of_or_within	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	inner ear receptor cell stereocilium organization	involved_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	paranodal junction maintenance	involved_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	positive regulation of gene expression	acts_upstream_of_or_within	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	retina homeostasis	involved_in	IEA	UniProtKB:Q80VW5\|UniProtKB:Q9P202\|ensembl:ENSMUSP00000081557\|ensembl:ENSP00000354623	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	sensory perception of light stimulus	involved_in	IEA	UniProtKB:Q9P202\|ensembl:ENSP00000354623	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	sensory perception of sound	involved_in	IEA	PANTHER:PTN000563364	150520179		TreeGrafter	GO_REF:0000118
Whrn	Squirrel	sensory perception of sound	involved_in	IEA	UniProtKB:Q9P202\|ensembl:ENSP00000354623	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	sensory perception of sound	acts_upstream_of_or_within	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Whrn	Squirrel	actin filament	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	apical dendrite		ISO	RGD:631330	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479
Whrn	Squirrel	axon collateral		ISO	RGD:631330	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479
Whrn	Squirrel	cell projection	located_in	IEA	UniProtKB-SubCell:SL-0280	150520179		UniProt	GO_REF:0000044
Whrn	Squirrel	cell projection	located_in	IEA	UniProtKB-KW:KW-0966	150520179		UniProt	GO_REF:0000043
Whrn	Squirrel	ciliary basal body	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	cilium	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	cilium	located_in	IEA	PANTHER:PTN000563364	150520179		TreeGrafter	GO_REF:0000118
Whrn	Squirrel	cytoplasm	located_in	IEA	UniProtKB:Q9P202\|ensembl:ENSP00000354623	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	dendritic shaft		ISO	RGD:631330	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479
Whrn	Squirrel	neuron projection	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	neuronal cell body		ISO	RGD:631330	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479
Whrn	Squirrel	neuronal cell body	located_in	ISO	RGD:631330	9068941		RGD	PMID:16434480\|REF_RGD_ID:1600128
Whrn	Squirrel	periciliary membrane compartment	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	perinuclear region of cytoplasm		ISO	RGD:631330	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479
Whrn	Squirrel	photoreceptor connecting cilium	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	photoreceptor inner segment	located_in	IEA	PANTHER:PTN000563364	150520179		TreeGrafter	GO_REF:0000118
Whrn	Squirrel	photoreceptor inner segment	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	plasma membrane	located_in	IEA	PANTHER:PTN000563364	150520179		TreeGrafter	GO_REF:0000118
Whrn	Squirrel	postsynapse		ISO	RGD:631330	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479
Whrn	Squirrel	presynapse		ISO	RGD:631330	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479
Whrn	Squirrel	stereocilia ankle link	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	stereocilia ankle link complex	part_of	IEA	PANTHER:PTN000563364	150520179		TreeGrafter	GO_REF:0000118
Whrn	Squirrel	stereocilia ankle link complex	part_of	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	stereocilium		ISO	RGD:631330	9068941		RGD	PMID:16434480\|REF_RGD_ID:1600128
Whrn	Squirrel	stereocilium	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	stereocilium bundle	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	stereocilium tip	located_in	IEA	PANTHER:PTN000563364	150520179		TreeGrafter	GO_REF:0000118
Whrn	Squirrel	stereocilium tip	located_in	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	USH2 complex	part_of	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Whrn	Squirrel	identical protein binding	enables	IEA	UniProtKB:Q80VW5\|ensembl:ENSMUSP00000081557	150520179		Ensembl	GO_REF:0000107
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q9QZZ4	9068941	PMID:15654330	UniProt	PMID:15654330
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q08509	9068941	PMID:21236676	UniProt	PMID:21236676
Whrn	Squirrel	protein binding	enables	ISO	PR:Q80T11	9068941	PMID:17906286	MGI	PMID:17906286
Whrn	Squirrel	protein binding	enables	ISO	PR:E9Q9W7\|PR:Q2QI47\|PR:Q8VHN7	9068941	PMID:25406310	MGI	PMID:25406310
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q9R0X5	9068941	PMID:22323458	UniProt	PMID:22323458
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:P97479\|UniProtKB:Q8C031\|UniProtKB:Q9QZZ4	9068941	PMID:15590698	UniProt	PMID:15590698
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q2QI47,UniProtKB:Q8VHN7	9068941	PMID:20502675	UniProt	PMID:20502675
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q8C031\|UniProtKB:Q9QZZ4	9068941	PMID:15590698	IntAct	PMID:15590698
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:P35226\|UniProtKB:P49023-2\|UniProtKB:P81274\|UniProtKB:Q08379\|UniProtKB:Q14145\|UniProtKB:Q4KMQ1-2\|UniProtKB:Q5JVL4\|UniProtKB:Q8N7W2-2\|UniProtKB:Q8NBT2\|UniProtKB:Q96D03\|UniProtKB:Q9UMD9	9068941	PMID:32296183	IntAct	PMID:32296183
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q00013	9068941	PMID:17584769	UniProt	PMID:17584769
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:P70290	9068941	PMID:16829577	IntAct	PMID:16829577
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q9R0X5-5	9068941	PMID:22323458	IntAct	PMID:22323458
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q2QI47	9068941	PMID:16301217	BHF-UCL	PMID:16301217
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:Q2QI47\|UniProtKB:Q8VHN7	9068941	PMID:23055499	UniProt	PMID:23055499
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:O75838	9068941	PMID:23023331	UniProt	PMID:23023331
Whrn	Squirrel	protein binding	enables	ISO	UniProtKB:O75445\|UniProtKB:Q8WXG9	9068941	PMID:16434480	UniProt	PMID:16434480
Whrn	Squirrel	protein domain specific binding		ISO	RGD:62004	9068941		RGD	PMID:12641734\|REF_RGD_ID:632479

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Whrn	Squirrel	auditory mechanotransduction pathway		ISO	RGD:1349509	9068941		RGD	PMID:19804752\|REF_RGD_ID:8547667

PMID:22301074	PMID:30032202

Whrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	183,899,942 - 183,979,707 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	3,669,104 - 3,748,238 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	3,668,465 - 3,748,234 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WHRN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	114,402,080 - 114,505,473 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	114,402,078 - 114,505,473 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	117,164,360 - 117,267,753 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	116,204,181 - 116,307,551 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	87,812,014 - 87,915,400 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI
HuRef	9	86,769,691 - 86,872,943 (-)	NCBI		HuRef
CHM1_1	9	117,311,097 - 117,414,443 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	126,594,499 - 126,697,864 (-)	NCBI		T2T-CHM13v2.0

Whrn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	63,333,145 - 63,414,320 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	63,333,147 - 63,414,228 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	63,414,908 - 63,496,083 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	63,414,910 - 63,495,991 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	63,075,944 - 63,156,985 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	62,901,271 - 62,982,312 (-)	NCBI		MGSCv36	mm8
Celera	4	62,074,390 - 62,155,742 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	33.97	NCBI

Whrn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	81,843,820 - 81,933,400 (-)	NCBI		GRCr8
mRatBN7.2	5	76,828,308 - 76,911,945 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	76,828,301 - 76,912,223 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	79,227,420 - 79,311,432 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	81,044,573 - 81,128,580 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	81,020,074 - 81,104,084 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	79,235,541 - 79,317,206 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	79,234,950 - 79,317,206 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	83,349,720 - 83,431,410 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	80,382,665 - 80,464,817 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	80,387,779 - 80,469,930 (-)	NCBI
Celera	5	75,762,917 - 75,845,137 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

Whrn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	13,116,001 - 13,207,266 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	13,116,001 - 13,207,266 (+)	NCBI	ChiLan1.0	ChiLan1.0

WHRN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	24,865,908 - 24,975,132 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	24,868,258 - 24,977,492 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	85,500,222 - 85,604,417 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	113,863,872 - 113,966,758 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	113,863,872 - 113,966,758 (-)	Ensembl	panpan1.1		panPan2

WHRN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	68,617,377 - 68,699,977 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	68,255,680 - 68,337,474 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	68,297,095 - 68,379,026 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI		UU_Cfam_GSD_1.0

WHRN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	255,009,771 - 255,095,222 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	255,009,765 - 255,095,281 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	286,086,617 - 286,113,609 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WHRN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	25,087,286 - 25,189,982 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	25,087,295 - 25,189,985 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	17,635,394 - 17,737,856 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Whrn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	20,700,593 - 20,788,628 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	20,700,632 - 20,788,628 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_013356651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000021789 ⟹ ENSSTOP00000015942

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	3,669,104 - 3,748,238 (-)	Ensembl

RefSeq Acc Id:

XM_013356651 ⟹ XP_013212105

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	183,899,942 - 183,979,707 (-)	NCBI
SpeTri2.0	NW_004936487	3,668,465 - 3,748,234 (-)	NCBI

Sequence:

show sequence

AGCTGCACCAGGCGCTGACGGCGCTGCTGAGCGAGGCGGAGCGGGAGCAGTTCACGCACTGCCTAAACGCATACCACGCGCGCCGCAACGTCTTCGACCTGGTGCGCACCTTGCGCGTCCTGCTGGAC
AGCCCGGTGAAGCGGCGCCTGCTGCCCATGCTGCGTCTGGTCATCCCGCGCTCAGACCAGCTGCTCTTCGACCAGTACACGGCTGAGGGTCTCTACCTGCCTGCCACCACCCCCTACAGGCAATCTGC
TTGGGGCGGCCCCGACGGCGCAGGGCCTGGGGAGGTGCGCCTGGTCAGCCTAAGGCGCGCTAAGGCCCACGAAGGCTTGGGCTTCAGTATCCGAGGGGGCTCAGAACACGGCGTGGGTATCTACGTTT
CCTTGGTGGAGCCTGGTTCCCTGGCTGAGAAAGAAGGGCTGCGGGTCGGGGACCAGATTCTGCGCGTCAACGATAAATCCCTAGCCCGGGTGACCCACGCAGAGGCAGTCAAGGCTCTGAAGGGCTCC
AAGAAGCTGGTACTGTCTGTGTACTCTGCGGGGCGCATCCCTGGAGGCTATGTCACCAACCACATCTACACCTGGGTGGACCCACAGGGCCGCAGCACCTCCCCGCCCTCAGGCCTGCCCAACCCCCA
GGGCAGCAGCGCTCTGAGACAGCCCGAGGGTGACCGGAGGAGCGGCTTCTGCCTCCTGCAAGGCGGGGATGAGAAAAAGGTGAACCTGGTGCTGGGGGATGGCCGCTCCCTGGGCCTCACCATCCGCG
GGGGCGCCGAGTACGGCCTGGGCATTTACATCACGGGTGTGGACCCCGGCTCGGAAGCGGAAAGCAGCGGGCTCAAGGTTGGGGACCAGATCCTGGAGGCCAACGGGCGGAGCTTCCTCACCATCCTG
CACGACGAGGCGGTCAAGCTGCTCAAGTCGTCTCGGCACCTCATCTTGACCGTGAAGGACGTCGGGAGGCTGCCGCACGCCCGCACCACGGTGGACGAGACCAAGTGGATCGCCAGTTCCCGGATTGG
GGAGAGCGCCACCAACTCGGCAGGGTTTCCAGGGGATGTCACAACAGAAGGGACCAACAAGCCAGGATTCTATAAGGGCCCAGCCGGCTCCCAGGTGACGCTGAGCAGCCTGGGGAACCAGACCCGAG
TGCTGCTGGAGGAACAGGCCCGGCACCTGCTGTCGGAGCAGGAGCGCGCCACCATGACCTACTACCTGGACGAGTACCGCCGCGGCAGCGTCTCCGTGGAGGCCCTCGTGATGGCCCTGTTCGAGCTG
CTCAACACCCACGCCAAGTTTGCTGTCCTCTCTGAGGTAAGAGGCACCATCTCCCCACAAGACCTGGACCGCTTTGACCACCTGGTGCTGAGGCGGGAGATCGAGTCCATGAAGGCACGTCAGCCGCC
GGGCCCTGGGGCCGGGGACACCTACTCCCTGGTGTCCTACAGCGACACGGGCTCGTCCACAGGCAGCCACGGCACCTCCACCACCGTCAGCTCGGCCAGGAACACCCTGGACCTGGAGGAGTCGGGCC
AGGCCGTCCAGGGCGGCGTCAACACGCTCCCCGACGTGTCCGTGGACGATGTCAAGCCCAGCTCCGAGGAGCTGCCCCACACCAAGCTGCCGCCTCCCCCTCCGCTTCTGGGCCAAGGCCCAGGCCAG
GACCGCCCGCCCAGCCAGCCGAGGAAGCCCGCCAGGGAGGACCCCCAGCCCCCCTCCTCCGCCTCCTCGCACTCAGGCATCATTTTCTCCGCACCCCAGACCTGCAGCCCGCCGCTGGCCGCCGCACC
CTCCCCAGGGCCCCCCTCCACCCAGGACTCGCCCTCCTCCCCCATCTACGCCTCCGTCTCCCCGGCCAAACCCAGCTCCAAGAGGCCACTGGATGCCCACCTGGCCCTGGTCACCCAGCAGCCCATCG
GCCCCTTCCCTCGGGTCCAGTCGCCCCCACACCTGAGGAGCCCCTCGGCAGAAGCCCCAGGAGCTGGGGGCTGCCTCCCGCCGCCCTCGCCCTCCGACCCCCTGGACCAGCCGAACCAACACTTCGTC
CTGGTGGAGGTGCACCGGCCCGACAGCGAGCCCGACGTGAACGAAGTGCGGGCCCTGCCCCAGACACGCACAGCCTCCACGCTCTCCCAGCTCTCGGACAGTGGGCAGACTCTTAGTGAGGACAGTGG
CGTGGATGCCGGAGAGCTGGAGGCCAGTGCCCCAGGCAGAGGCAGACAGATGGCTTCCACCAAGAACAAGAGTAGCAAGGAGCTGCCGCAGACGGAGAGAGCCACCGAGGGGGCCACCAAGCCGCCTG
GACTCCTGGAGCCTACGTCTACGCTGGTCCGCGTGAAGAAAAGTGCAGCTACCCTGGGCATCGCCATCGAGGGTGGCGCCAACACACGCCAGCCCCTGCCTAGGATTGTCACCATTCAGCGAGGCGGC
TCGGCCCACAACTGTGGGCAGCTCAAGGTGGGCCACGTGATCCTGGAAGTGAACGGGCTGACGCTCCGGGGCAAGGAGCATCGGGAGGCTGCCCGCATCATCGCTGAGGCCTTCAAGACCAAGGACCG
TGACTACATCGACTTCCTGGTCACCGAATTCAATGTGATGCTCTAGGGGCCGAGGCCTAACGGCCTCCCACTACTGCCCAGCCCCGGGTCCCTCCCCTGTCCTGCCACTCTCAGGCTCCTCGAGGGGG
AGGGGCTGCGTGGCCTGGGTGGCAGGAAGGCGTCCCCTCTCCCTCCTGGCCCACTGCACCAGAACTGGGGGAAAAGGGAACTGGGCAAGGCCGACAGATGGCAGGTCAGAGTTGGGGTGCCGGGGACC
CGGTGGGCGCTCAATATGAGAGGTTCTGGGAAGGAAGACAGAAGAGGAAGGGCAGAGGGCCTGCTTCCATTGGCTGGAGGGTGGCACTCCTGTCCCCAGCCAGCTAGCACCCAGCCCACCCCCAGATG
CCTGAGCCTCTGGAGCAAGGACACAGGAGAACTCAGACACGGCTTCCTGCGGGGGCATCTTGCAGGACCTTCAGTGCCACAAACAAGCATCAAGCCTGCCCCCACTCACACCCTTCCTCCTGGCTCCT
CTCCCCACAGTATTTATTATTTATTTCCTCCCCGCACTCCAGGGGACTCCACAGCCCCAGCTTCCCACCCCCCAGCCTGTTCCGGAGGCCTTGCAGATGACCAGCAGGGTCAGTGTATTTATATACAG
AGCTTACGACTTTAATTTTTCAATAAAGAAATCTGAACAAGGTTA

hide sequence


Protein RefSeqs	XP_013212105	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015942.2
GenBank Protein	KAG3287784	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013212105 ⟸ XM_013356651

- UniProtKB:

I3MUZ7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLRLVIPRSDQLLFDQYTAEGLYLPATTPYRQSAWGGPDGAGPGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYS
AGRIPGGYVTNHIYTWVDPQGRSTSPPSGLPNPQGSSALRQPEGDRRSGFCLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAESSGLKVGDQILEANGRSFLTILHDEAVKLLK
SSRHLILTVKDVGRLPHARTTVDETKWIASSRIGESATNSAGFPGDVTTEGTNKPGFYKGPAGSQVTLSSLGNQTRVLLEEQARHLLSEQERATMTYYLDEYRRGSVSVEALVMALFELLNTHAKFAV
LSEVRGTISPQDLDRFDHLVLRREIESMKARQPPGPGAGDTYSLVSYSDTGSSTGSHGTSTTVSSARNTLDLEESGQAVQGGVNTLPDVSVDDVKPSSEELPHTKLPPPPPLLGQGPGQDRPPSQPRK
PAREDPQPPSSASSHSGIIFSAPQTCSPPLAAAPSPGPPSTQDSPSSPIYASVSPAKPSSKRPLDAHLALVTQQPIGPFPRVQSPPHLRSPSAEAPGAGGCLPPPSPSDPLDQPNQHFVLVEVHRPDS
EPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGELEASAPGRGRQMASTKNKSSKELPQTERATEGATKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLK
VGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNVML

hide sequence

Ensembl Acc Id:

ENSSTOP00000015942 ⟸ ENSSTOT00000021789

Protein Domains

PDZ

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029145	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000021789.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1160.20	UniProtKB/TrEMBL
	2.30.42.10	UniProtKB/TrEMBL
InterPro	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	USH2_Complex_Protein	UniProtKB/TrEMBL
	Whirlin	UniProtKB/TrEMBL
	Whirlin_HN-like_dom1	UniProtKB/TrEMBL
NCBI Gene	Whrn	ENTREZGENE
PANTHER	PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED	UniProtKB/TrEMBL
	PTHR23116:SF37	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
PROSITE	PDZ	UniProtKB/TrEMBL
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50156	UniProtKB/TrEMBL
UniProt	I3MUZ7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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