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Gene: Whrn (whirlin) Ictidomys tridecemlineatus

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Symbol:

Whrn

Name:

whirlin

RGD ID:

12449322

Description:

ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); establishment of localization in cell (ortholog); establishment of protein localization (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Aland Island eye disease (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 31 (ortholog); FOUND IN apical dendrite (ortholog); axon collateral (ortholog); dendritic shaft (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WHRN (whirlin)	NCBI	Ortholog
Mus musculus (house mouse):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	183,899,942 - 183,979,707 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	3,669,104 - 3,748,238 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	3,668,465 - 3,748,234 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aland Island eye disease (ISO)

autosomal recessive nonsyndromic deafness (ISO)

autosomal recessive nonsyndromic deafness 31 (ISO)

Deafness (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

optic atrophy (ISO)

retinitis pigmentosa-deafness syndrome (ISO)

sensorineural hearing loss (ISO)

Usher syndrome (ISO)

Usher syndrome type 2D (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

auditory receptor cell stereocilium organization (IEA,ISO)

cerebellar Purkinje cell layer formation (IEA)

detection of mechanical stimulus involved in sensory perception of sound (IEA)

establishment of localization in cell (IEA,ISO)

establishment of protein localization (IEA,ISO)

inner ear receptor cell stereocilium organization (IEA)

paranodal junction maintenance (IEA)

positive regulation of gene expression (IEA,ISO)

retina homeostasis (IEA)

sensory perception of light stimulus (IEA)

sensory perception of sound (IEA,ISO)

Cellular Component

actin filament (IEA)

apical dendrite (ISO)

axon collateral (ISO)

cell projection (IEA)

ciliary basal body (IEA)

cilium (IEA)

cytoplasm (IEA)

dendritic shaft (ISO)

neuron projection (IEA)

neuronal cell body (ISO)

periciliary membrane compartment (IEA)

perinuclear region of cytoplasm (ISO)

photoreceptor connecting cilium (IEA)

photoreceptor inner segment (IEA)

plasma membrane (IEA)

postsynapse (ISO)

presynapse (ISO)

stereocilia ankle link (IEA)

stereocilia ankle link complex (IEA)

stereocilium (IEA,ISO)

stereocilium bundle (IEA)

stereocilium tip (IEA)

USH2 complex (IEA)

Molecular Function

identical protein binding (IEA)

protein binding (ISO)

protein domain specific binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Whrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	183,899,942 - 183,979,707 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	3,669,104 - 3,748,238 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	3,668,465 - 3,748,234 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WHRN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	114,402,080 - 114,505,473 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	114,402,078 - 114,505,473 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	117,164,360 - 117,267,753 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	116,204,181 - 116,307,551 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	87,812,014 - 87,915,400 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI
HuRef	9	86,769,691 - 86,872,943 (-)	NCBI		HuRef
CHM1_1	9	117,311,097 - 117,414,443 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	126,594,499 - 126,697,864 (-)	NCBI		T2T-CHM13v2.0

Whrn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	63,333,145 - 63,414,320 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	63,333,147 - 63,414,228 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	63,414,908 - 63,496,083 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	63,414,910 - 63,495,991 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	63,075,944 - 63,156,985 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	62,901,271 - 62,982,312 (-)	NCBI		MGSCv36	mm8
Celera	4	62,074,390 - 62,155,742 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	33.97	NCBI

Whrn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	81,843,820 - 81,933,400 (-)	NCBI		GRCr8
mRatBN7.2	5	76,828,308 - 76,911,945 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	76,828,301 - 76,912,223 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	79,227,420 - 79,311,432 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	81,044,573 - 81,128,580 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	81,020,074 - 81,104,084 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	79,235,541 - 79,317,206 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	79,234,950 - 79,317,206 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	83,349,720 - 83,431,410 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	80,382,665 - 80,464,817 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	80,387,779 - 80,469,930 (-)	NCBI
Celera	5	75,762,917 - 75,845,137 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

Whrn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	13,116,001 - 13,207,266 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	13,116,001 - 13,207,266 (+)	NCBI	ChiLan1.0	ChiLan1.0

WHRN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	24,865,908 - 24,975,132 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	24,868,258 - 24,977,492 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	85,500,222 - 85,604,417 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	113,863,872 - 113,966,758 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	113,863,872 - 113,966,758 (-)	Ensembl	panpan1.1		panPan2

WHRN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	68,617,377 - 68,699,977 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	68,255,680 - 68,337,474 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	68,297,095 - 68,379,026 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI		UU_Cfam_GSD_1.0

WHRN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	255,009,771 - 255,095,222 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	255,009,765 - 255,095,281 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	286,086,617 - 286,113,609 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WHRN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	25,087,286 - 25,189,982 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	25,087,295 - 25,189,985 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	17,635,394 - 17,737,856 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Whrn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	20,700,593 - 20,788,628 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	20,700,632 - 20,788,628 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013356651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000021789 ⟹ ENSSTOP00000015942

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	3,669,104 - 3,748,238 (-)	Ensembl

RefSeq Acc Id:

XM_013356651 ⟹ XP_013212105

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	183,899,942 - 183,979,707 (-)	NCBI
SpeTri2.0	NW_004936487	3,668,465 - 3,748,234 (-)	NCBI

Sequence:

show sequence

AGCTGCACCAGGCGCTGACGGCGCTGCTGAGCGAGGCGGAGCGGGAGCAGTTCACGCACTGCCT
AAACGCATACCACGCGCGCCGCAACGTCTTCGACCTGGTGCGCACCTTGCGCGTCCTGCTGGAC
AGCCCGGTGAAGCGGCGCCTGCTGCCCATGCTGCGTCTGGTCATCCCGCGCTCAGACCAGCTGC
TCTTCGACCAGTACACGGCTGAGGGTCTCTACCTGCCTGCCACCACCCCCTACAGGCAATCTGC
TTGGGGCGGCCCCGACGGCGCAGGGCCTGGGGAGGTGCGCCTGGTCAGCCTAAGGCGCGCTAAG
GCCCACGAAGGCTTGGGCTTCAGTATCCGAGGGGGCTCAGAACACGGCGTGGGTATCTACGTTT
CCTTGGTGGAGCCTGGTTCCCTGGCTGAGAAAGAAGGGCTGCGGGTCGGGGACCAGATTCTGCG
CGTCAACGATAAATCCCTAGCCCGGGTGACCCACGCAGAGGCAGTCAAGGCTCTGAAGGGCTCC
AAGAAGCTGGTACTGTCTGTGTACTCTGCGGGGCGCATCCCTGGAGGCTATGTCACCAACCACA
TCTACACCTGGGTGGACCCACAGGGCCGCAGCACCTCCCCGCCCTCAGGCCTGCCCAACCCCCA
GGGCAGCAGCGCTCTGAGACAGCCCGAGGGTGACCGGAGGAGCGGCTTCTGCCTCCTGCAAGGC
GGGGATGAGAAAAAGGTGAACCTGGTGCTGGGGGATGGCCGCTCCCTGGGCCTCACCATCCGCG
GGGGCGCCGAGTACGGCCTGGGCATTTACATCACGGGTGTGGACCCCGGCTCGGAAGCGGAAAG
CAGCGGGCTCAAGGTTGGGGACCAGATCCTGGAGGCCAACGGGCGGAGCTTCCTCACCATCCTG
CACGACGAGGCGGTCAAGCTGCTCAAGTCGTCTCGGCACCTCATCTTGACCGTGAAGGACGTCG
GGAGGCTGCCGCACGCCCGCACCACGGTGGACGAGACCAAGTGGATCGCCAGTTCCCGGATTGG
GGAGAGCGCCACCAACTCGGCAGGGTTTCCAGGGGATGTCACAACAGAAGGGACCAACAAGCCA
GGATTCTATAAGGGCCCAGCCGGCTCCCAGGTGACGCTGAGCAGCCTGGGGAACCAGACCCGAG
TGCTGCTGGAGGAACAGGCCCGGCACCTGCTGTCGGAGCAGGAGCGCGCCACCATGACCTACTA
CCTGGACGAGTACCGCCGCGGCAGCGTCTCCGTGGAGGCCCTCGTGATGGCCCTGTTCGAGCTG
CTCAACACCCACGCCAAGTTTGCTGTCCTCTCTGAGGTAAGAGGCACCATCTCCCCACAAGACC
TGGACCGCTTTGACCACCTGGTGCTGAGGCGGGAGATCGAGTCCATGAAGGCACGTCAGCCGCC
GGGCCCTGGGGCCGGGGACACCTACTCCCTGGTGTCCTACAGCGACACGGGCTCGTCCACAGGC
AGCCACGGCACCTCCACCACCGTCAGCTCGGCCAGGAACACCCTGGACCTGGAGGAGTCGGGCC
AGGCCGTCCAGGGCGGCGTCAACACGCTCCCCGACGTGTCCGTGGACGATGTCAAGCCCAGCTC
CGAGGAGCTGCCCCACACCAAGCTGCCGCCTCCCCCTCCGCTTCTGGGCCAAGGCCCAGGCCAG
GACCGCCCGCCCAGCCAGCCGAGGAAGCCCGCCAGGGAGGACCCCCAGCCCCCCTCCTCCGCCT
CCTCGCACTCAGGCATCATTTTCTCCGCACCCCAGACCTGCAGCCCGCCGCTGGCCGCCGCACC
CTCCCCAGGGCCCCCCTCCACCCAGGACTCGCCCTCCTCCCCCATCTACGCCTCCGTCTCCCCG
GCCAAACCCAGCTCCAAGAGGCCACTGGATGCCCACCTGGCCCTGGTCACCCAGCAGCCCATCG
GCCCCTTCCCTCGGGTCCAGTCGCCCCCACACCTGAGGAGCCCCTCGGCAGAAGCCCCAGGAGC
TGGGGGCTGCCTCCCGCCGCCCTCGCCCTCCGACCCCCTGGACCAGCCGAACCAACACTTCGTC
CTGGTGGAGGTGCACCGGCCCGACAGCGAGCCCGACGTGAACGAAGTGCGGGCCCTGCCCCAGA
CACGCACAGCCTCCACGCTCTCCCAGCTCTCGGACAGTGGGCAGACTCTTAGTGAGGACAGTGG
CGTGGATGCCGGAGAGCTGGAGGCCAGTGCCCCAGGCAGAGGCAGACAGATGGCTTCCACCAAG
AACAAGAGTAGCAAGGAGCTGCCGCAGACGGAGAGAGCCACCGAGGGGGCCACCAAGCCGCCTG
GACTCCTGGAGCCTACGTCTACGCTGGTCCGCGTGAAGAAAAGTGCAGCTACCCTGGGCATCGC
CATCGAGGGTGGCGCCAACACACGCCAGCCCCTGCCTAGGATTGTCACCATTCAGCGAGGCGGC
TCGGCCCACAACTGTGGGCAGCTCAAGGTGGGCCACGTGATCCTGGAAGTGAACGGGCTGACGC
TCCGGGGCAAGGAGCATCGGGAGGCTGCCCGCATCATCGCTGAGGCCTTCAAGACCAAGGACCG
TGACTACATCGACTTCCTGGTCACCGAATTCAATGTGATGCTCTAGGGGCCGAGGCCTAACGGC
CTCCCACTACTGCCCAGCCCCGGGTCCCTCCCCTGTCCTGCCACTCTCAGGCTCCTCGAGGGGG
AGGGGCTGCGTGGCCTGGGTGGCAGGAAGGCGTCCCCTCTCCCTCCTGGCCCACTGCACCAGAA
CTGGGGGAAAAGGGAACTGGGCAAGGCCGACAGATGGCAGGTCAGAGTTGGGGTGCCGGGGACC
CGGTGGGCGCTCAATATGAGAGGTTCTGGGAAGGAAGACAGAAGAGGAAGGGCAGAGGGCCTGC
TTCCATTGGCTGGAGGGTGGCACTCCTGTCCCCAGCCAGCTAGCACCCAGCCCACCCCCAGATG
CCTGAGCCTCTGGAGCAAGGACACAGGAGAACTCAGACACGGCTTCCTGCGGGGGCATCTTGCA
GGACCTTCAGTGCCACAAACAAGCATCAAGCCTGCCCCCACTCACACCCTTCCTCCTGGCTCCT
CTCCCCACAGTATTTATTATTTATTTCCTCCCCGCACTCCAGGGGACTCCACAGCCCCAGCTTC
CCACCCCCCAGCCTGTTCCGGAGGCCTTGCAGATGACCAGCAGGGTCAGTGTATTTATATACAG
AGCTTACGACTTTAATTTTTCAATAAAGAAATCTGAACAAGGTTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_013212105	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015942.2
GenBank Protein	KAG3287784	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013212105 ⟸ XM_013356651

- UniProtKB:

I3MUZ7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLRLVIPRSDQLLFDQYTAEGLYLPATTPYRQSAWGGPDGAGPGEVRLVSLRRAKAHEGLGFSI
RGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYS
AGRIPGGYVTNHIYTWVDPQGRSTSPPSGLPNPQGSSALRQPEGDRRSGFCLLQGGDEKKVNLV
LGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAESSGLKVGDQILEANGRSFLTILHDEAVKLLK
SSRHLILTVKDVGRLPHARTTVDETKWIASSRIGESATNSAGFPGDVTTEGTNKPGFYKGPAGS
QVTLSSLGNQTRVLLEEQARHLLSEQERATMTYYLDEYRRGSVSVEALVMALFELLNTHAKFAV
LSEVRGTISPQDLDRFDHLVLRREIESMKARQPPGPGAGDTYSLVSYSDTGSSTGSHGTSTTVS
SARNTLDLEESGQAVQGGVNTLPDVSVDDVKPSSEELPHTKLPPPPPLLGQGPGQDRPPSQPRK
PAREDPQPPSSASSHSGIIFSAPQTCSPPLAAAPSPGPPSTQDSPSSPIYASVSPAKPSSKRPL
DAHLALVTQQPIGPFPRVQSPPHLRSPSAEAPGAGGCLPPPSPSDPLDQPNQHFVLVEVHRPDS
EPDVNEVRALPQTRTASTLSQLSDSGQTLSEDSGVDAGELEASAPGRGRQMASTKNKSSKELPQ
TERATEGATKPPGLLEPTSTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLK
VGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNVML

hide sequence

Ensembl Acc Id:

ENSSTOP00000015942 ⟸ ENSSTOT00000021789

Protein Domains

PDZ

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029145	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000021789.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1160.20	UniProtKB/TrEMBL
	2.30.42.10	UniProtKB/TrEMBL
InterPro	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	USH2_Complex_Protein	UniProtKB/TrEMBL
	Whirlin	UniProtKB/TrEMBL
	Whirlin_HN-like_dom1	UniProtKB/TrEMBL
NCBI Gene	Whrn	ENTREZGENE
PANTHER	PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED	UniProtKB/TrEMBL
	PTHR23116:SF37	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
PROSITE	PDZ	UniProtKB/TrEMBL
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50156	UniProtKB/TrEMBL
UniProt	I3MUZ7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations