WHRN (whirlin) - Rat Genome Database

Name: WHRN
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: WHRN (whirlin) Canis lupus familiaris

Analyze

Symbol:

WHRN

Name:

whirlin

RGD ID:

12112810

Description:

ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); establishment of localization in cell (ortholog); establishment of protein localization (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Aland Island eye disease (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 31 (ortholog); FOUND IN apical dendrite (ortholog); axon collateral (ortholog); dendritic shaft (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WHRN (whirlin)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WHRN (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Whrn (whirlin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	68,617,377 - 68,699,977 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	68,255,680 - 68,337,474 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	68,297,095 - 68,379,026 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aland Island eye disease (ISO)

autosomal recessive nonsyndromic deafness (ISO)

autosomal recessive nonsyndromic deafness 31 (ISO)

Deafness (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

retinitis pigmentosa-deafness syndrome (ISO)

sensorineural hearing loss (ISO)

Usher syndrome (ISO)

Usher syndrome type 2D (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

auditory receptor cell stereocilium organization (IEA,ISO)

cerebellar Purkinje cell layer formation (IEA)

detection of mechanical stimulus involved in sensory perception of sound (IEA)

establishment of localization in cell (IEA,ISO)

establishment of protein localization (IEA,ISO)

inner ear receptor cell stereocilium organization (IEA)

paranodal junction maintenance (IEA)

positive regulation of gene expression (IEA,ISO)

retina homeostasis (IEA)

sensory perception of light stimulus (IEA)

sensory perception of sound (IEA,ISO)

Cellular Component

actin filament (IEA)

apical dendrite (ISO)

axon collateral (ISO)

cell projection (IEA)

ciliary basal body (IEA)

cilium (IEA)

cytoplasm (IEA)

dendritic shaft (ISO)

neuron projection (IEA)

neuronal cell body (ISO)

periciliary membrane compartment (IEA)

perinuclear region of cytoplasm (ISO)

photoreceptor connecting cilium (IEA)

photoreceptor inner segment (IEA)

plasma membrane (IEA)

postsynapse (ISO)

presynapse (ISO)

stereocilia ankle link (IEA)

stereocilia ankle link complex (IEA)

stereocilium (IEA,ISO)

stereocilium bundle (IEA)

stereocilium tip (IEA)

USH2 complex (IEA)

Molecular Function

identical protein binding (IEA)

protein binding (ISO)

protein domain specific binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

WHRN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	68,617,377 - 68,699,977 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	68,255,680 - 68,337,474 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	68,297,095 - 68,379,026 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI		UU_Cfam_GSD_1.0

WHRN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	114,402,080 - 114,505,473 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	114,402,080 - 114,505,473 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	117,164,360 - 117,267,753 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	116,204,181 - 116,307,551 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	87,812,014 - 87,915,400 (-)	NCBI		Celera
Cytogenetic Map	9	q32	NCBI
HuRef	9	86,769,691 - 86,872,943 (-)	NCBI		HuRef
CHM1_1	9	117,311,097 - 117,414,443 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	126,594,499 - 126,697,864 (-)	NCBI		T2T-CHM13v2.0

Whrn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	63,333,145 - 63,414,320 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	63,333,147 - 63,414,228 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	63,414,908 - 63,496,083 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	63,414,910 - 63,495,991 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	63,075,944 - 63,156,985 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	62,901,271 - 62,982,312 (-)	NCBI		MGSCv36	mm8
Celera	4	62,074,390 - 62,155,742 (-)	NCBI		Celera
Cytogenetic Map	4	B3	NCBI
cM Map	4	33.97	NCBI

Whrn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	81,843,820 - 81,933,400 (-)	NCBI		GRCr8
mRatBN7.2	5	76,828,308 - 76,911,945 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	76,828,301 - 76,912,223 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	79,227,420 - 79,311,432 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	81,044,573 - 81,128,580 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	81,020,074 - 81,104,084 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	79,235,541 - 79,317,206 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	79,234,950 - 79,317,206 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	83,349,720 - 83,431,410 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	80,382,665 - 80,464,817 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	80,387,779 - 80,469,930 (-)	NCBI
Celera	5	75,762,917 - 75,845,137 (-)	NCBI		Celera
Cytogenetic Map	5	q24	NCBI

Whrn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	13,116,001 - 13,207,266 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	13,116,001 - 13,207,266 (+)	NCBI	ChiLan1.0	ChiLan1.0

WHRN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	24,865,908 - 24,975,132 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	24,868,258 - 24,977,492 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	85,500,222 - 85,604,417 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	113,863,872 - 113,966,758 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	113,863,872 - 113,966,758 (-)	Ensembl	panpan1.1		panPan2

Whrn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	183,899,942 - 183,979,707 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	3,669,104 - 3,748,238 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	3,668,465 - 3,748,234 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WHRN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	255,009,771 - 255,095,222 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	255,009,765 - 255,095,281 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	286,086,617 - 286,113,609 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WHRN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	25,087,286 - 25,189,982 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	25,087,295 - 25,189,985 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666035	17,635,394 - 17,737,856 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Whrn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	20,700,593 - 20,788,628 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	20,700,632 - 20,788,628 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in WHRN
2073 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			9		6				7	8	2	5
Low	5		11	4		4	6		5		8	1
Below cutoff		5	2	2		2		6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005626954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005626956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014117952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038491074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038553209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038553210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038553211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038553212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038617086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_850321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000005356 ⟹ ENSCAFP00000004960

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	68,617,377 - 68,699,977 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00000083752 ⟹ ENSCAFP00000062330

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	68,617,377 - 68,699,977 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845017605 ⟹ ENSCAFP00845013707

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845017695 ⟹ ENSCAFP00845013778

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845017771 ⟹ ENSCAFP00845013845

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845017853 ⟹ ENSCAFP00845013907

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	11	69,740,233 - 69,822,842 (-)	Ensembl

RefSeq Acc Id:

XM_005626954 ⟹ XP_005627011

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI

Sequence:

show sequence

TCCCCCCGCGCGCGCCCGGGCCTCGGCGGGGCCATGAAGGCGCAGCTGGACGGCCTGTCGGGGA
GCTCGTCCTCCAGCGGCTCGCCGGGCGCGGCGGCGGGCGGGGGCGCGGGCGGGGGCGCGGGCGG
GGGCGCGGGCGCGGGCGCGGGCGCGGGGCTGCGGCTGCTGTCGGCCAACGTGCGGCAGCTGCAC
CGGGCGCTGACGGCGCTGCTGAGCGAGGCGGAGCGCGAGCAGTTCACGCACTGCCTCAACGCCT
ACCACGCGCGCCGCAACGTGTTCGACCTGGTGCGCACCCTGCGCGTGCTGCTGGACAGCCCGGG
CAAGCGGCGCCTGCTGCCGCTGCTGCGCCTGGTCATCCCGCGCTCCGACCAGCTGCTCTTCGAC
CAGTACACGGCCGAGGGGCTCTACCTGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCT
CCTGCCGCCCGCCGGCCTGGGGCGGCCCCGACGGCGCGGGGCCCGGGGACGTGCGCCTGGTGAG
CCTGCGGCGCGCCAGGGCCCACGAGGGCCTGGGCTTCAGCATCCGCGGGGGCGCGGAGCACGGC
GTGGGCATCTACGTGTCGCTGGTGGAGCCGGGCTCCCTGGCCGAGAAGGAGGGGCTGCGGGTCG
GGGACCAGATTCTGCGCGTCAACGACAAGTCCCTGGCCCGGGTGACCCACGCCGAGGCGGTCAA
GGCTCTGAAGGGCTCTAAGAAGCTGCTGTTGTCCGTGTACTCGGCAGGGCGCATCCCCGGGGGC
TACATCACCAACCACATCTACACCTGGGTGGACCCCCAGGGCCGCAGCATCTCCCCGCCCTCAG
GCCTGCCCCAGACCCACGGCAGCACCCTGAGGCAGCGCGAGGGTGACTCCAGGAGCACCCTGCA
CCTCCTGCAAGGCGGGGACGAGAAGAAGGTGAACCTGGTGCTGGGCGAGGGCCGCTCCCTGGGC
CTCACGATCCGCGGGGGAGCCGAGTACGGCCTGGGCATTTACGTCACCGGTGTGGACGCGGGCT
CAGAAGCAGAGAGCAGTGGGCTCAAGGTTGGGGACCAGATCCTGGAGGTGAACGGGCGGAGCTT
TCTCAACATCCTGCATGACGAGGCGGTCAGGCTGCTCAAGTCATCCCAGCACCTCATCCTGACG
GTGAAGGACGTGGGGAGGCTGCCCCACGCCCGCACCACGGTGGACGAGACCAAGTGGATCGCCA
GTTCCCGGATCGAGGACGCCACCGCAAACACGGCAGGGTTCCCTGGGGATCTTCCCACGGAAGG
AACAAGCAAGCTGGGATTGTGCAAGGGGCCGGCTGGCTCCCAGGTGACCCTGAGCAGCCTGGGC
CACCAGACGCGTGTGCTGCTGGAGGAGCAGGCAAGGCACTTGCTGAACCCACAGGAGCGCGCCA
CCATGGCCTACTACCTGGAGGAGTACCGCGGCGGCAGCGTCTCCGTGGAGGCCCTGGTCATGGC
CCTGTTTGAGCTGTTCAACACCAACGCCAAGTTCTCGCTCCTGTCTGAAGTGAGGGGCACCATC
TCCCCCCAAGACCTGGACCGCTTCGACCACCTGGTGCTGAGACGGGAGATCGAGTCCATGAAGG
CGCGCCAGCCCCCGGGCCCTGGGGCCGGGGACACCTACTCCGTGGTCTCCTACAGCGACACGGG
CTCGTCCACAGGCAGCCACGGCACCTCCACCACCGTCAGCTCGGCCAGGAACACTCTGGACCTG
GAGGAAACTGGTGAGGCTGTCCAGGGCAGTACGAACACCCTCCCAGACGTTTCCCTGGATGATG
TCAAAGCCGGCTCCGGCTCCGAGGGGCTGCCCGGCTGCAAGCCGCCGCCTCCCCCGCCGCCCCT
GGCCCAAGGCCACGGCCGCCCGCCCACCCAGCGGAGGAAGCCAGCGCAAGAGGACGTCCAGCCC
CCTTCGTCCGCGTCCTCCCACTCGGGCATCGTCTTCTCGGCCCCGAGGACCCACAGCCCACTGG
CGGGCACCGCACCGGCCCCAGGCGCCCCGGCAGCCCCAGACCCGCCCTCCTCCCCCGTCTATGC
CTCTGTGTCCCCCGCCAACCCCGGCTCCAAGAGGCCGCTGGACGCCCACCTGGCCCTGGTCAAC
CAGCACCCCATCGGCCCCTTCCCGCGTGTCCGGTCACCCCCGCACCTGAAGAGCCCCCCTGCAG
AGGCCACGCCGGTGGGGGGATGCCTCCCGCCGCCCTCCCCCTTGAGCCGGCCGGATGTGACGGG
CACGAACCAGCACTTTGTCATGGTGGAGGTGCACCGGCCCGACAGCGAGCCCGACGTGAACGAA
GTGAGGGCGCTGCCGCAGACGCGCGCCTCCACACTGTCCCAGCTCTCGGACAGTGGGCAGACCC
TGAGCGAGGACAGCGGTGTGGACGCCGGTGAGGCAGAGGCCAGCGCCCCGGGCCGAGGCAGACA
GATCGCCTCCACCAAGAGCAGGTGTAGCAAGGAGCCACCTCGGAACGAGAGGACTGCAGAGGGG
GCCACCAAACCGCCTGGCCTCCTGGAGCCCACGTCCACCGTGGTCCGTGTGAAGAAAAGTGCAG
CCACCCTGGGCATTGCCATCGAGGGTGGCGCCAACACCCGCCAGCCCCTGCCTCGGATCGTCAC
GATTCAGCGAGGCGGTTCGGCCCACAACTGTGGGCAGCTCAAGGTGGGCCACGTGATCCTGGAA
GTGAACGGGCTGACGCTCCGGGGCAAGGAGCATCGGGAGGCGGCCCGCATCATTGCAGAGGCCT
TCAAGACCAAGGAGAGAGACTACATCGACTTTCTGGTCACGGAGTTCAACGTGATGCTCTAGAG
GCTGAGGCCTGGAGGCCCCCCACTGCTGCCCAGTCCCTGGCCCCGGTCCCTCCTCCCTCCCAGC
ACTATAAGCTCCTCAAGGGCCGGGGCTGCGTAGCCAGGGTAGCAGGAAGACATCCCCCCCACTC
TTTCCTGGCACACCGGCCCAGAACCAGGAGAAGAAAGCCGGGTGAGGCACACAGAAGGTCAGGC
TGGAGTCCGGTGCCATGCCCGGGGTACGCAGTAGGCGCTCAGTACAAGCATGGGTGTCGGGAAG
GAGAGAAGGTCCACCGGAGGCCTGCCAGGGCCCGTTACCTGGGTTAGGGGGAGGGGGCACTGTG
TCCCCCGCCCCCGCCAGCTAGGACCTGGCCCATCCTCAGGTTATCTGAGCCTTTATCTGGAGTG
AGGTCACATGAGAATTCGAGGACACAGCCCCCAGCCAGGGGGGCATCTTGCAGGACCTTTAGTG
CCACAAATAAGCATCAAGCAACTCCCCCCTCCATTCTCACCTCCTCTCCTCCTGGCTCCTTATC
CCCCTATAGTATTTATTATTTATTTCCCTCTCCTCACCCCTGGGGACCCCAAGACCCCAGGTTC
CCAGCCCTGCCCCCAGCCTATCCCAGAGGCCTTGCAGGTGACCAGCGATGTCAGCGTATTTATA
TACAGAGCTTATGACTTTAATTTTTCAATAAAGAAATCTGAACAAGGTTGA

hide sequence

RefSeq Acc Id:

XM_005626956 ⟹ XP_005627013

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI

Sequence:

show sequence

TCCCCCCGCGCGCGCCCGGGCCTCGGCGGGGCCATGAAGGCGCAGCTGGACGGCCTGTCGGGGA
GCTCGTCCTCCAGCGGCTCGCCGGGCGCGGCGGCGGGCGGGGGCGCGGGCGGGGGCGCGGGCGG
GGGCGCGGGCGCGGGCGCGGGCGCGGGGCTGCGGCTGCTGTCGGCCAACGTGCGGCAGCTGCAC
CGGGCGCTGACGGCGCTGCTGAGCGAGGCGGAGCGCGAGCAGTTCACGCACTGCCTCAACGCCT
ACCACGCGCGCCGCAACGTGTTCGACCTGGTGCGCACCCTGCGCGTGCTGCTGGACAGCCCGGG
CAAGCGGCGCCTGCTGCCGCTGCTGCGCCTGGTCATCCCGCGCTCCGACCAGCTGCTCTTCGAC
CAGTACACGGCCGAGGGGCTCTACCTGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCT
CCTGCCGCCCGCCGGCCTGGGGCGGCCCCGACGGCGCGGGGCCCGGGGACGTGCGCCTGGTGAG
CCTGCGGCGCGCCAGGGCCCACGAGGGCCTGGGCTTCAGCATCCGCGGGGGCGCGGAGCACGGC
GTGGGCATCTACGTGTCGCTGGTGGAGCCGGGCTCCCTGGCCGAGAAGGAGGGGCTGCGGGTCG
GGGACCAGATTCTGCGCGTCAACGACAAGTCCCTGGCCCGGGTGACCCACGCCGAGGCGGTCAA
GGCTCTGAAGGGCTCTAAGAAGCTGCTGTTGTCCGTGTACTCGGCAGGGCGCATCCCCGGGGGC
TACATCACCAACCACATCTACACCTGGGTGGACCCCCAGGGCCGCAGCATCTCCCCGCCCTCAG
GCCTGCCCCAGACCCACGGCAGCACCCTGAGGCAGCGCGAGGGTGACTCCAGGAGCACCCTGCA
CCTCCTGCAAGGCGGGGACGAGAAGAAGGTGAACCTGGTGCTGGGCGAGGGCCGCTCCCTGGGC
CTCACGATCCGCGGGGGAGCCGAGTACGGCCTGGGCATTTACGTCACCGGTGTGGACGCGGGCT
CAGAAGCAGAGAGCAGTGGGCTCAAGGTTGGGGACCAGATCCTGGAGGTGAACGGGCGGAGCTT
TCTCAACATCCTGCATGACGAGGCGGTCAGGCTGCTCAAGTCATCCCAGCACCTCATCCTGACG
GTGAAGGACGTGGGGAGGCTGCCCCACGCCCGCACCACGGTGGACGAGACCAAGTGGATCGCCA
GTTCCCGGATCGAGGACGCCACCGCAAACACGGCAGGGTTCCCTGGGGATCTTCCCACGGAAGG
AACAAGCAAGCTGGGATTGTGCAAGGGGCCGGCTGGCTCCCAGGTGACCCTGAGCAGCCTGGGC
CACCAGACGCGTGTGCTGCTGGAGGAGCAGGCAAGGCACTTGCTGAACCCACAGGAGCGCGCCA
CCATGGCCTACTACCTGGAGGAGTACCGCGGCGGCAGCGTCTCCGTGGAGGCCCTGGTCATGGC
CCTGTTTGAGCTGTTCAACACCAACGCCAAGTTCTCGCTCCTGTCTGAAGTGAGGGGCACCATC
TCCCCCCAAGACCTGGACCGCTTCGACCACCTGGTGCTGAGACGGGAGATCGAGTCCATGAAGG
CGCGCCAGCCCCCGGGCCCTGGGGCCGGGGACACCTACTCCGTGGTCTCCTACAGCGACACGGG
CTCGTCCACAGGCAGCCACGGCACCTCCACCACCGTCAGCTCGGCCAGGGAGCGGCTGCTGTGG
CTTATAGACCTGATGGAGAACACTCTGGACCTGGAGGAAACTGGTGAGGCTGTCCAGGGCAGTA
CGAACACCCTCCCAGACGTTTCCCTGGATGATGTCAAAGCCGGCTCCGGCTCCGAGGGGCTGCC
CGGCTGCAAGCCGCCGCCTCCCCCGCCGCCCCTGGCCCAAGGCCACGGCCGCCCGCCCACCCAG
CGGAGGAAGCCAGCGCAAGAGGACGTCCAGCCCCCTTCGTCCGCGTCCTCCCACTCGGGCATCG
TCTTCTCGGCCCCGAGGACCCACAGCCCACTGGCGGGCACCGCACCGGCCCCAGGCGCCCCGGC
AGCCCCAGACCCGCCCTCCTCCCCCGTCTATGCCTCTGTGTCCCCCGCCAACCCCGGCTCCAAG
AGGCCGCTGGACGCCCACCTGGCCCTGGTCAACCAGCACCCCATCGGCCCCTTCCCGCGTGTCC
GGTCACCCCCGCACCTGAAGAGCCCCCCTGCAGAGGCCACGCCGGTGGGGGGATGCCTCCCGCC
GCCCTCCCCCTTGAGCCGGCCGGATGTGACGGGCACGAACCAGCACTTTGTCATGGTGGAGGTG
CACCGGCCCGACAGCGAGCCCGACGTGAACGAAGTGAGGGCGCTGCCGCAGACGCGCGCAGCCT
CCACACTGTCCCAGCTCTCGGACAGTGGGCAGACCCTGAGCGAGGACAGCGGTGTGGACGCCGG
TGAGGCAGAGGCCAGCGCCCCGGGCCGAGGCAGACAGATCGCCTCCACCAAGAGCAGGTGTAGC
AAGGAGCCACCTCGGAACGAGAGGACTGCAGAGGGGGCCACCAAACCGCCTGGCCTCCTGGAGC
CCACGTCCACCGTGGTCCGTGTGAAGAAAAGTGCAGCCACCCTGGGCATTGCCATCGAGGGTGG
CGCCAACACCCGCCAGCCCCTGCCTCGGATCGTCACGATTCAGCGAGGCGGTTCGGCCCACAAC
TGTGGGCAGCTCAAGGTGGGCCACGTGATCCTGGAAGTGAACGGGCTGACGCTCCGGGGCAAGG
AGCATCGGGAGGCGGCCCGCATCATTGCAGAGGCCTTCAAGACCAAGGAGAGAGACTACATCGA
CTTTCTGGTCACGGAGTTCAACGTGATGCTCTAGAGGCTGAGGCCTGGAGGCCCCCCACTGCTG
CCCAGTCCCTGGCCCCGGTCCCTCCTCCCTCCCAGCACTATAAGCTCCTCAAGGGCCGGGGCTG
CGTAGCCAGGGTAGCAGGAAGACATCCCCCCCACTCTTTCCTGGCACACCGGCCCAGAACCAGG
AGAAGAAAGCCGGGTGAGGCACACAGAAGGTCAGGCTGGAGTCCGGTGCCATGCCCGGGGTACG
CAGTAGGCGCTCAGTACAAGCATGGGTGTCGGGAAGGAGAGAAGGTCCACCGGAGGCCTGCCAG
GGCCCGTTACCTGGGTTAGGGGGAGGGGGCACTGTGTCCCCCGCCCCCGCCAGCTAGGACCTGG
CCCATCCTCAGGTTATCTGAGCCTTTATCTGGAGTGAGGTCACATGAGAATTCGAGGACACAGC
CCCCAGCCAGGGGGGCATCTTGCAGGACCTTTAGTGCCACAAATAAGCATCAAGCAACTCCCCC
CTCCATTCTCACCTCCTCTCCTCCTGGCTCCTTATCCCCCTATAGTATTTATTATTTATTTCCC
TCTCCTCACCCCTGGGGACCCCAAGACCCCAGGTTCCCAGCCCTGCCCCCAGCCTATCCCAGAG
GCCTTGCAGGTGACCAGCGATGTCAGCGTATTTATATACAGAGCTTATGACTTTAATTTTTCAA
TAAAGAAATCTGAACAAGGTTGA

hide sequence

RefSeq Acc Id:

XM_014117952 ⟹ XP_013973427

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI

Sequence:

show sequence

TCCCCCCGCGCGCGCCCGGGCCTCGGCGGGGCCATGAAGGCGCAGCTGGACGGCCTGTCGGGGA
GCTCGTCCTCCAGCGGCTCGCCGGGCGCGGCGGCGGGCGGGGGCGCGGGCGGGGGCGCGGGCGG
GGGCGCGGGCGCGGGCGCGGGCGCGGGGCTGCGGCTGCTGTCGGCCAACGTGCGGCAGCTGCAC
CGGGCGCTGACGGCGCTGCTGAGCGAGGCGGAGCGCGAGCAGTTCACGCACTGCCTCAACGCCT
ACCACGCGCGCCGCAACGTGTTCGACCTGGTGCGCACCCTGCGCGTGCTGCTGGACAGCCCGGG
CAAGCGGCGCCTGCTGCCGCTGCTGCGCCTGGTCATCCCGCGCTCCGACCAGCTGCTCTTCGAC
CAGTACACGGCCGAGGGGCTCTACCTGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCT
CCTGCCGCCCGCCGGCCTGGGGCGGCCCCGACGGCGCGGGGCCCGGGGACGTGCGCCTGGTGAG
CCTGCGGCGCGCCAGGGCCCACGAGGGCCTGGGCTTCAGCATCCGCGGGGGCGCGGAGCACGGC
GTGGGCATCTACGTGTCGCTGGTGGAGCCGGGCTCCCTGGCCGAGAAGGAGGGGCTGCGGGTCG
GGGACCAGATTCTGCGCGTCAACGACAAGTCCCTGGCCCGGGTGACCCACGCCGAGGCGGTCAA
GGCTCTGAAGGGCTCTAAGAAGCTGCTGTTGTCCGTGTACTCGGCAGGGCGCATCCCCGGGGGC
TACATCACCAACCACATCTACACCTGGGTGGACCCCCAGGGCCGCAGCATCTCCCCGCCCTCAG
GCCTGCCCCAGACCCACGGCAGCACCCTGAGGCAGCGCGAGGGTGACTCCAGGAGCACCCTGCA
CCTCCTGCAAGGCGGGGACGAGAAGAAGGTGAACCTGGTGCTGGGCGAGGGCCGCTCCCTGGGC
CTCACGATCCGCGGGGGAGCCGAGTACGGCCTGGGCATTTACGTCACCGGTGTGGACGCGGGCT
CAGAAGCAGAGAGCAGTGGGCTCAAGGTTGGGGACCAGATCCTGGAGGTGAACGGGCGGAGCTT
TCTCAACATCCTGCATGACGAGGCGGTCAGGCTGCTCAAGTCATCCCAGCACCTCATCCTGACG
GTGAAGGACGTGGGGAGGCTGCCCCACGCCCGCACCACGGTGGACGAGACCAAGTGGATCGCCA
GTTCCCGGATCGAGGACGCCACCGCAAACACGGCAGGGTTCCCTGGGGATCTTCCCACGGAAGG
AACAAGCAAGCTGGGATTGTGCAAGGGGCCGGCTGGCTCCCAGGTGACCCTGAGCAGCCTGGGC
CACCAGACGCGTGTGCTGCTGGAGGAGCAGGCAAGGCACTTGCTGAACCCACAGGAGCGCGCCA
CCATGGCCTACTACCTGGAGGAGTACCGCGGCGGCAGCGTCTCCGTGGAGGCCCTGGTCATGGC
CCTGTTTGAGCTGTTCAACACCAACGCCAAGTTCTCGCTCCTGTCTGAAGTGAGGGGCACCATC
TCCCCCCAAGACCTGGACCGCTTCGACCACCTGGTGCTGAGACGGGAGATCGAGTCCATGAAGG
CGCGCCAGCCCCCGGGCCCTGGGGCCGGGGACACCTACTCCGTGGTCTCCTACAGCGACACGGG
CTCGTCCACAGGCAGCCACGGCACCTCCACCACCGTCAGCTCGGCCAGGGAGCGGCTGCTGTGG
CTTATAGACCTGATGGAGAACACTCTGGACCTGGAGGAAACTGGTGAGGCTGTCCAGGGCAGTA
CGAACACCCTCCCAGACGTTTCCCTGGATGATGTCAAAGCCGGCTCCGGCTCCGAGGGGCTGCC
CGGCTGCAAGCCGCCGCCTCCCCCGCCGCCCCTGGCCCAAGGCCACGGCCGCCCGCCCACCCAG
CGGAGGAAGCCAGCGCAAGAGGACGTCCAGCCCCCTTCGTCCGCGTCCTCCCACTCGGGCATCG
TCTTCTCGGCCCCGAGGACCCACAGCCCACTGGCGGGCACCGCACCGGCCCCAGGCGCCCCGGC
AGCCCCAGACCCGCCCTCCTCCCCCGTCTATGCCTCTGTGTCCCCCGCCAACCCCGGCTCCAAG
AGGCCGCTGGACGCCCACCTGGCCCTGGTCAACCAGCACCCCATCGGCCCCTTCCCGCGTGTCC
GGTCACCCCCGCACCTGAAGAGCCCCCCTGCAGAGGCCACGCCGGTGGGGGGATGCCTCCCGCC
GCCCTCCCCCTTGAGCCGGCCGGATGTGACGGGCACGAACCAGCACTTTGTCATGGTGGAGGTG
CACCGGCCCGACAGCGAGCCCGACGTGAACGAAGTGAGGGCGCTGCCGCAGACGCGCGCCTCCA
CACTGTCCCAGCTCTCGGACAGTGGGCAGACCCTGAGCGAGGACAGCGGTGTGGACGCCGGTGA
GGCAGAGGCCAGCGCCCCGGGCCGAGGCAGACAGATCGCCTCCACCAAGAGCAGGTGTAGCAAG
GAGCCACCTCGGAACGAGAGGACTGCAGAGGGGGCCACCAAACCGCCTGGCCTCCTGGAGCCCA
CGTCCACCGTGGTCCGTGTGAAGAAAAGTGCAGCCACCCTGGGCATTGCCATCGAGGGTGGCGC
CAACACCCGCCAGCCCCTGCCTCGGATCGTCACGATTCAGCGAGGCGGTTCGGCCCACAACTGT
GGGCAGCTCAAGGTGGGCCACGTGATCCTGGAAGTGAACGGGCTGACGCTCCGGGGCAAGGAGC
ATCGGGAGGCGGCCCGCATCATTGCAGAGGCCTTCAAGACCAAGGAGAGAGACTACATCGACTT
TCTGGTCACGGAGTTCAACGTGATGCTCTAGAGGCTGAGGCCTGGAGGCCCCCCACTGCTGCCC
AGTCCCTGGCCCCGGTCCCTCCTCCCTCCCAGCACTATAAGCTCCTCAAGGGCCGGGGCTGCGT
AGCCAGGGTAGCAGGAAGACATCCCCCCCACTCTTTCCTGGCACACCGGCCCAGAACCAGGAGA
AGAAAGCCGGGTGAGGCACACAGAAGGTCAGGCTGGAGTCCGGTGCCATGCCCGGGGTACGCAG
TAGGCGCTCAGTACAAGCATGGGTGTCGGGAAGGAGAGAAGGTCCACCGGAGGCCTGCCAGGGC
CCGTTACCTGGGTTAGGGGGAGGGGGCACTGTGTCCCCCGCCCCCGCCAGCTAGGACCTGGCCC
ATCCTCAGGTTATCTGAGCCTTTATCTGGAGTGAGGTCACATGAGAATTCGAGGACACAGCCCC
CAGCCAGGGGGGCATCTTGCAGGACCTTTAGTGCCACAAATAAGCATCAAGCAACTCCCCCCTC
CATTCTCACCTCCTCTCCTCCTGGCTCCTTATCCCCCTATAGTATTTATTATTTATTTCCCTCT
CCTCACCCCTGGGGACCCCAAGACCCCAGGTTCCCAGCCCTGCCCCCAGCCTATCCCAGAGGCC
TTGCAGGTGACCAGCGATGTCAGCGTATTTATATACAGAGCTTATGACTTTAATTTTTCAATAA
AGAAATCTGAACAAGGTTGA

hide sequence

RefSeq Acc Id:

XM_038491074 ⟹ XP_038347002

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	68,255,680 - 68,337,474 (-)	NCBI

RefSeq Acc Id:

XM_038553209 ⟹ XP_038409137

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI

RefSeq Acc Id:

XM_038553210 ⟹ XP_038409138

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI

RefSeq Acc Id:

XM_038553211 ⟹ XP_038409139

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI

RefSeq Acc Id:

XM_038553212 ⟹ XP_038409140

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	69,026,162 - 69,108,222 (-)	NCBI

RefSeq Acc Id:

XM_038617086 ⟹ XP_038473014

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	68,297,095 - 68,379,026 (-)	NCBI

RefSeq Acc Id:

XM_038682541 ⟹ XP_038538469

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI

RefSeq Acc Id:

XM_038682542 ⟹ XP_038538470

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI

RefSeq Acc Id:

XM_038682543 ⟹ XP_038538471

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI

RefSeq Acc Id:

XM_038682544 ⟹ XP_038538472

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	69,740,224 - 69,822,125 (-)	NCBI

RefSeq Acc Id:

XM_850321 ⟹ XP_855414

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	68,617,383 - 68,699,824 (-)	NCBI
Dog10K_Boxer_Tasha	11	67,019,883 - 67,101,711 (-)	NCBI

Sequence:

show sequence

TCCCCCCGCGCGCGCCCGGGCCTCGGCGGGGCCATGAAGGCGCAGCTGGACGGCCTGTCGGGGA
GCTCGTCCTCCAGCGGCTCGCCGGGCGCGGCGGCGGGCGGGGGCGCGGGCGGGGGCGCGGGCGG
GGGCGCGGGCGCGGGCGCGGGCGCGGGGCTGCGGCTGCTGTCGGCCAACGTGCGGCAGCTGCAC
CGGGCGCTGACGGCGCTGCTGAGCGAGGCGGAGCGCGAGCAGTTCACGCACTGCCTCAACGCCT
ACCACGCGCGCCGCAACGTGTTCGACCTGGTGCGCACCCTGCGCGTGCTGCTGGACAGCCCGGG
CAAGCGGCGCCTGCTGCCGCTGCTGCGCCTGGTCATCCCGCGCTCCGACCAGCTGCTCTTCGAC
CAGTACACGGCCGAGGGGCTCTACCTGCCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCCT
CCTGCCGCCCGCCGGCCTGGGGCGGCCCCGACGGCGCGGGGCCCGGGGACGTGCGCCTGGTGAG
CCTGCGGCGCGCCAGGGCCCACGAGGGCCTGGGCTTCAGCATCCGCGGGGGCGCGGAGCACGGC
GTGGGCATCTACGTGTCGCTGGTGGAGCCGGGCTCCCTGGCCGAGAAGGAGGGGCTGCGGGTCG
GGGACCAGATTCTGCGCGTCAACGACAAGTCCCTGGCCCGGGTGACCCACGCCGAGGCGGTCAA
GGCTCTGAAGGGCTCTAAGAAGCTGCTGTTGTCCGTGTACTCGGCAGGGCGCATCCCCGGGGGC
TACATCACCAACCACATCTACACCTGGGTGGACCCCCAGGGCCGCAGCATCTCCCCGCCCTCAG
GCCTGCCCCAGACCCACGGCAGCACCCTGAGGCAGCGCGAGGGTGACTCCAGGAGCACCCTGCA
CCTCCTGCAAGGCGGGGACGAGAAGAAGGTGAACCTGGTGCTGGGCGAGGGCCGCTCCCTGGGC
CTCACGATCCGCGGGGGAGCCGAGTACGGCCTGGGCATTTACGTCACCGGTGTGGACGCGGGCT
CAGAAGCAGAGAGCAGTGGGCTCAAGGTTGGGGACCAGATCCTGGAGGTGAACGGGCGGAGCTT
TCTCAACATCCTGCATGACGAGGCGGTCAGGCTGCTCAAGTCATCCCAGCACCTCATCCTGACG
GTGAAGGACGTGGGGAGGCTGCCCCACGCCCGCACCACGGTGGACGAGACCAAGTGGATCGCCA
GTTCCCGGATCGAGGACGCCACCGCAAACACGGCAGGGTTCCCTGGGGATCTTCCCACGGAAGG
AACAAGCAAGCTGGGATTGTGCAAGGGGCCGGCTGGCTCCCAGGTGACCCTGAGCAGCCTGGGC
CACCAGACGCGTGTGCTGCTGGAGGAGCAGGCAAGGCACTTGCTGAACCCACAGGAGCGCGCCA
CCATGGCCTACTACCTGGAGGAGTACCGCGGCGGCAGCGTCTCCGTGGAGGCCCTGGTCATGGC
CCTGTTTGAGCTGTTCAACACCAACGCCAAGTTCTCGCTCCTGTCTGAAGTGAGGGGCACCATC
TCCCCCCAAGACCTGGACCGCTTCGACCACCTGGTGCTGAGACGGGAGATCGAGTCCATGAAGG
CGCGCCAGCCCCCGGGCCCTGGGGCCGGGGACACCTACTCCGTGGTCTCCTACAGCGACACGGG
CTCGTCCACAGGCAGCCACGGCACCTCCACCACCGTCAGCTCGGCCAGGAACACTCTGGACCTG
GAGGAAACTGGTGAGGCTGTCCAGGGCAGTACGAACACCCTCCCAGACGTTTCCCTGGATGATG
TCAAAGCCGGCTCCGGCTCCGAGGGGCTGCCCGGCTGCAAGCCGCCGCCTCCCCCGCCGCCCCT
GGCCCAAGGCCACGGCCGCCCGCCCACCCAGCGGAGGAAGCCAGCGCAAGAGGACGTCCAGCCC
CCTTCGTCCGCGTCCTCCCACTCGGGCATCGTCTTCTCGGCCCCGAGGACCCACAGCCCACTGG
CGGGCACCGCACCGGCCCCAGGCGCCCCGGCAGCCCCAGACCCGCCCTCCTCCCCCGTCTATGC
CTCTGTGTCCCCCGCCAACCCCGGCTCCAAGAGGCCGCTGGACGCCCACCTGGCCCTGGTCAAC
CAGCACCCCATCGGCCCCTTCCCGCGTGTCCGGTCACCCCCGCACCTGAAGAGCCCCCCTGCAG
AGGCCACGCCGGTGGGGGGATGCCTCCCGCCGCCCTCCCCCTTGAGCCGGCCGGATGTGACGGG
CACGAACCAGCACTTTGTCATGGTGGAGGTGCACCGGCCCGACAGCGAGCCCGACGTGAACGAA
GTGAGGGCGCTGCCGCAGACGCGCGCAGCCTCCACACTGTCCCAGCTCTCGGACAGTGGGCAGA
CCCTGAGCGAGGACAGCGGTGTGGACGCCGGTGAGGCAGAGGCCAGCGCCCCGGGCCGAGGCAG
ACAGATCGCCTCCACCAAGAGCAGGTGTAGCAAGGAGCCACCTCGGAACGAGAGGACTGCAGAG
GGGGCCACCAAACCGCCTGGCCTCCTGGAGCCCACGTCCACCGTGGTCCGTGTGAAGAAAAGTG
CAGCCACCCTGGGCATTGCCATCGAGGGTGGCGCCAACACCCGCCAGCCCCTGCCTCGGATCGT
CACGATTCAGCGAGGCGGTTCGGCCCACAACTGTGGGCAGCTCAAGGTGGGCCACGTGATCCTG
GAAGTGAACGGGCTGACGCTCCGGGGCAAGGAGCATCGGGAGGCGGCCCGCATCATTGCAGAGG
CCTTCAAGACCAAGGAGAGAGACTACATCGACTTTCTGGTCACGGAGTTCAACGTGATGCTCTA
GAGGCTGAGGCCTGGAGGCCCCCCACTGCTGCCCAGTCCCTGGCCCCGGTCCCTCCTCCCTCCC
AGCACTATAAGCTCCTCAAGGGCCGGGGCTGCGTAGCCAGGGTAGCAGGAAGACATCCCCCCCA
CTCTTTCCTGGCACACCGGCCCAGAACCAGGAGAAGAAAGCCGGGTGAGGCACACAGAAGGTCA
GGCTGGAGTCCGGTGCCATGCCCGGGGTACGCAGTAGGCGCTCAGTACAAGCATGGGTGTCGGG
AAGGAGAGAAGGTCCACCGGAGGCCTGCCAGGGCCCGTTACCTGGGTTAGGGGGAGGGGGCACT
GTGTCCCCCGCCCCCGCCAGCTAGGACCTGGCCCATCCTCAGGTTATCTGAGCCTTTATCTGGA
GTGAGGTCACATGAGAATTCGAGGACACAGCCCCCAGCCAGGGGGGCATCTTGCAGGACCTTTA
GTGCCACAAATAAGCATCAAGCAACTCCCCCCTCCATTCTCACCTCCTCTCCTCCTGGCTCCTT
ATCCCCCTATAGTATTTATTATTTATTTCCCTCTCCTCACCCCTGGGGACCCCAAGACCCCAGG
TTCCCAGCCCTGCCCCCAGCCTATCCCAGAGGCCTTGCAGGTGACCAGCGATGTCAGCGTATTT
ATATACAGAGCTTATGACTTTAATTTTTCAATAAAGAAATCTGAACAAGGTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005627011	(Get FASTA)	NCBI Sequence Viewer
	XP_005627013	(Get FASTA)	NCBI Sequence Viewer
	XP_013973427	(Get FASTA)	NCBI Sequence Viewer
	XP_038347002	(Get FASTA)	NCBI Sequence Viewer
	XP_038409137	(Get FASTA)	NCBI Sequence Viewer
	XP_038409138	(Get FASTA)	NCBI Sequence Viewer
	XP_038409139	(Get FASTA)	NCBI Sequence Viewer
	XP_038409140	(Get FASTA)	NCBI Sequence Viewer
	XP_038473014	(Get FASTA)	NCBI Sequence Viewer
	XP_038538469	(Get FASTA)	NCBI Sequence Viewer
	XP_038538470	(Get FASTA)	NCBI Sequence Viewer
	XP_038538471	(Get FASTA)	NCBI Sequence Viewer
	XP_038538472	(Get FASTA)	NCBI Sequence Viewer
	XP_855414	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000004960.5
	ENSCAFP00000062330.2
	ENSCAFP00000068939.1
	ENSCAFP00000072394.1
	ENSCAFP00000074096.1
	ENSCAFP00845013707
	ENSCAFP00845013707.1
	ENSCAFP00845013778
	ENSCAFP00845013778.1
	ENSCAFP00845013845.1
	ENSCAFP00845013907.1

RefSeq Acc Id:	XP_005627011 ⟸ XM_005626954
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKAQLDGLSGSSSSSGSPGAAAGGGAGGGAGGGAGAGAGAGLRLLSANVRQLHRALTALLSEAE REQFTHCLNAYHARRNVFDLVRTLRVLLDSPGKRRLLPLLRLVIPRSDQLLFDQYTAEGLYLPA AAAAAAAAASSCRPPAWGGPDGAGPGDVRLVSLRRARAHEGLGFSIRGGAEHGVGIYVSLVEPG SLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLLLSVYSAGRIPGGYITNHIYTWVD PQGRSISPPSGLPQTHGSTLRQREGDSRSTLHLLQGGDEKKVNLVLGEGRSLGLTIRGGAEYGL GIYVTGVDAGSEAESSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSQHLILTVKDVGRLPHAR TTVDETKWIASSRIEDATANTAGFPGDLPTEGTSKLGLCKGPAGSQVTLSSLGHQTRVLLEEQA RHLLNPQERATMAYYLEEYRGGSVSVEALVMALFELFNTNAKFSLLSEVRGTISPQDLDRFDHL VLRREIESMKARQPPGPGAGDTYSVVSYSDTGSSTGSHGTSTTVSSARNTLDLEETGEAVQGST NTLPDVSLDDVKAGSGSEGLPGCKPPPPPPPLAQGHGRPPTQRRKPAQEDVQPPSSASSHSGIV FSAPRTHSPLAGTAPAPGAPAAPDPPSSPVYASVSPANPGSKRPLDAHLALVNQHPIGPFPRVR SPPHLKSPPAEATPVGGCLPPPSPLSRPDVTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRAST LSQLSDSGQTLSEDSGVDAGEAEASAPGRGRQIASTKSRCSKEPPRNERTAEGATKPPGLLEPT STVVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEH REAARIIAEAFKTKERDYIDFLVTEFNVML hide sequence

RefSeq Acc Id:	XP_855414 ⟸ XM_850321
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKAQLDGLSGSSSSSGSPGAAAGGGAGGGAGGGAGAGAGAGLRLLSANVRQLHRALTALLSEAE REQFTHCLNAYHARRNVFDLVRTLRVLLDSPGKRRLLPLLRLVIPRSDQLLFDQYTAEGLYLPA AAAAAAAAASSCRPPAWGGPDGAGPGDVRLVSLRRARAHEGLGFSIRGGAEHGVGIYVSLVEPG SLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLLLSVYSAGRIPGGYITNHIYTWVD PQGRSISPPSGLPQTHGSTLRQREGDSRSTLHLLQGGDEKKVNLVLGEGRSLGLTIRGGAEYGL GIYVTGVDAGSEAESSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSQHLILTVKDVGRLPHAR TTVDETKWIASSRIEDATANTAGFPGDLPTEGTSKLGLCKGPAGSQVTLSSLGHQTRVLLEEQA RHLLNPQERATMAYYLEEYRGGSVSVEALVMALFELFNTNAKFSLLSEVRGTISPQDLDRFDHL VLRREIESMKARQPPGPGAGDTYSVVSYSDTGSSTGSHGTSTTVSSARNTLDLEETGEAVQGST NTLPDVSLDDVKAGSGSEGLPGCKPPPPPPPLAQGHGRPPTQRRKPAQEDVQPPSSASSHSGIV FSAPRTHSPLAGTAPAPGAPAAPDPPSSPVYASVSPANPGSKRPLDAHLALVNQHPIGPFPRVR SPPHLKSPPAEATPVGGCLPPPSPLSRPDVTGTNQHFVMVEVHRPDSEPDVNEVRALPQTRAAS TLSQLSDSGQTLSEDSGVDAGEAEASAPGRGRQIASTKSRCSKEPPRNERTAEGATKPPGLLEP TSTVVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKE HREAARIIAEAFKTKERDYIDFLVTEFNVML hide sequence

RefSeq Acc Id:	XP_013973427 ⟸ XM_014117952
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKAQLDGLSGSSSSSGSPGAAAGGGAGGGAGGGAGAGAGAGLRLLSANVRQLHRALTALLSEAE REQFTHCLNAYHARRNVFDLVRTLRVLLDSPGKRRLLPLLRLVIPRSDQLLFDQYTAEGLYLPA AAAAAAAAASSCRPPAWGGPDGAGPGDVRLVSLRRARAHEGLGFSIRGGAEHGVGIYVSLVEPG SLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLLLSVYSAGRIPGGYITNHIYTWVD PQGRSISPPSGLPQTHGSTLRQREGDSRSTLHLLQGGDEKKVNLVLGEGRSLGLTIRGGAEYGL GIYVTGVDAGSEAESSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSQHLILTVKDVGRLPHAR TTVDETKWIASSRIEDATANTAGFPGDLPTEGTSKLGLCKGPAGSQVTLSSLGHQTRVLLEEQA RHLLNPQERATMAYYLEEYRGGSVSVEALVMALFELFNTNAKFSLLSEVRGTISPQDLDRFDHL VLRREIESMKARQPPGPGAGDTYSVVSYSDTGSSTGSHGTSTTVSSARERLLWLIDLMENTLDL EETGEAVQGSTNTLPDVSLDDVKAGSGSEGLPGCKPPPPPPPLAQGHGRPPTQRRKPAQEDVQP PSSASSHSGIVFSAPRTHSPLAGTAPAPGAPAAPDPPSSPVYASVSPANPGSKRPLDAHLALVN QHPIGPFPRVRSPPHLKSPPAEATPVGGCLPPPSPLSRPDVTGTNQHFVMVEVHRPDSEPDVNE VRALPQTRASTLSQLSDSGQTLSEDSGVDAGEAEASAPGRGRQIASTKSRCSKEPPRNERTAEG ATKPPGLLEPTSTVVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILE VNGLTLRGKEHREAARIIAEAFKTKERDYIDFLVTEFNVML hide sequence

RefSeq Acc Id:	XP_005627013 ⟸ XM_005626956
- Peptide Label:	isoform X1
- UniProtKB:	A0A8P0N698 (UniProtKB/TrEMBL), A0A8C0JL02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKAQLDGLSGSSSSSGSPGAAAGGGAGGGAGGGAGAGAGAGLRLLSANVRQLHRALTALLSEAE REQFTHCLNAYHARRNVFDLVRTLRVLLDSPGKRRLLPLLRLVIPRSDQLLFDQYTAEGLYLPA AAAAAAAAASSCRPPAWGGPDGAGPGDVRLVSLRRARAHEGLGFSIRGGAEHGVGIYVSLVEPG SLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLLLSVYSAGRIPGGYITNHIYTWVD PQGRSISPPSGLPQTHGSTLRQREGDSRSTLHLLQGGDEKKVNLVLGEGRSLGLTIRGGAEYGL GIYVTGVDAGSEAESSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSQHLILTVKDVGRLPHAR TTVDETKWIASSRIEDATANTAGFPGDLPTEGTSKLGLCKGPAGSQVTLSSLGHQTRVLLEEQA RHLLNPQERATMAYYLEEYRGGSVSVEALVMALFELFNTNAKFSLLSEVRGTISPQDLDRFDHL VLRREIESMKARQPPGPGAGDTYSVVSYSDTGSSTGSHGTSTTVSSARERLLWLIDLMENTLDL EETGEAVQGSTNTLPDVSLDDVKAGSGSEGLPGCKPPPPPPPLAQGHGRPPTQRRKPAQEDVQP PSSASSHSGIVFSAPRTHSPLAGTAPAPGAPAAPDPPSSPVYASVSPANPGSKRPLDAHLALVN QHPIGPFPRVRSPPHLKSPPAEATPVGGCLPPPSPLSRPDVTGTNQHFVMVEVHRPDSEPDVNE VRALPQTRAASTLSQLSDSGQTLSEDSGVDAGEAEASAPGRGRQIASTKSRCSKEPPRNERTAE GATKPPGLLEPTSTVVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVIL EVNGLTLRGKEHREAARIIAEAFKTKERDYIDFLVTEFNVML hide sequence

RefSeq Acc Id:

ENSCAFP00000004960 ⟸ ENSCAFT00000005356

RefSeq Acc Id:

ENSCAFP00000062330 ⟸ ENSCAFT00000083752

RefSeq Acc Id:	XP_038347002 ⟸ XM_038491074
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038473014 ⟸ XM_038617086
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038538472 ⟸ XM_038682544
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038538471 ⟸ XM_038682543
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I3N9H2 (UniProtKB/TrEMBL), A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038538470 ⟸ XM_038682542
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038538469 ⟸ XM_038682541
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3N452 (UniProtKB/TrEMBL), A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038409140 ⟸ XM_038553212
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038409139 ⟸ XM_038553211
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038409138 ⟸ XM_038553210
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038409137 ⟸ XM_038553209
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JL02 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845013778 ⟸ ENSCAFT00845017695

RefSeq Acc Id:

ENSCAFP00845013845 ⟸ ENSCAFT00845017771

RefSeq Acc Id:

ENSCAFP00845013707 ⟸ ENSCAFT00845017605

RefSeq Acc Id:

ENSCAFP00845013907 ⟸ ENSCAFT00845017853

Protein Domains

PDZ

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000003344	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00845009977	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000005356.6	UniProtKB/TrEMBL
	ENSCAFT00000083752.2	UniProtKB/TrEMBL
	ENSCAFT00000099886.1	UniProtKB/TrEMBL
	ENSCAFT00000102579.1	UniProtKB/TrEMBL
	ENSCAFT00000110104.1	UniProtKB/TrEMBL
	ENSCAFT00845017605	ENTREZGENE
	ENSCAFT00845017605.1	UniProtKB/TrEMBL
	ENSCAFT00845017695	ENTREZGENE
	ENSCAFT00845017695.1	UniProtKB/TrEMBL
	ENSCAFT00845017771.1	UniProtKB/TrEMBL
	ENSCAFT00845017853.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1160.20	UniProtKB/TrEMBL
	2.30.42.10	UniProtKB/TrEMBL
InterPro	PDZ	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Whirlin	UniProtKB/TrEMBL
NCBI Gene	WHRN	ENTREZGENE
PANTHER	PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED	UniProtKB/TrEMBL
	PTHR23116:SF37	UniProtKB/TrEMBL
Pfam	PDZ	UniProtKB/TrEMBL
PROSITE	PDZ	UniProtKB/TrEMBL
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50156	UniProtKB/TrEMBL
UniProt	A0A8C0JL02	ENTREZGENE
	A0A8I3N452	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N9H2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RXJ3_CANLF	UniProtKB/TrEMBL
	A0A8I3RXK6_CANLF	UniProtKB/TrEMBL
	A0A8P0N698	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PB94_CANLF	UniProtKB/TrEMBL
	A0A8P0TL76_CANLF	UniProtKB/TrEMBL
	A0A8P0TR36_CANLF	UniProtKB/TrEMBL
	A0A8P0TTE3_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:48408	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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