Emca12 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Emca12 (Estrogen-induced mammary cancer QTL 12) Rattus norvegicus

Symbol: Emca12
Name: Estrogen-induced mammary cancer QTL 12
RGD ID: 7394710
Previously known as: Emca8.2
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8594,034,903 - 139,034,903RGD_MAPPER_PIPELINE
mRatBN7.25124,160,767 - 133,749,643RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05129,038,716 - 139,099,229RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05132,878,119 - 142,889,552RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.45130,756,424 - 140,741,152RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: ACI.BN-(D5Uwm70-D5Rat32)/Shul 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Cdkn2c is a candidate Gene for Emca12

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Mapping of three genetic determinants of susceptibility to estrogen-induced mammary cancer within the Emca8 locus on rat chromosome 5. Schaffer BS, etal., Cancer Prev Res (Phila). 2013 Jan;6(1):59-69. doi: 10.1158/1940-6207.CAPR-12-0346-T. Epub 2012 Nov 14.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1311126Ttc39atetratricopeptide repeat domain 39A5124165102124204740Rat
2321596Rnf11ring finger protein 115124212433124243125Rat
41086853Rnu4-2RNA, U4 small nuclear 25124264229124264369Rat
1591038C5h1orf185similar to human chromosome 1 open reading frame 1855124276074124295881Rat
41264577LOC120103306small nucleolar RNA SNORA175124306820124306946Rat
1584919Eno1-ps10enolase 1, pseudogene 105124325978124327290Rat
2325Cdkn2ccyclin-dependent kinase inhibitor 2C5124411123124416278Rat
70987Faf1Fas associated factor 15124426032124790014Rat
7561791Dmrta2osldoublesex and mab-3 related transcription factor like family A2, opposite strand like5124800951124807191Rat
1308173Dmrta2DMRT-like family A25124805883124811694Rat
1560027Elavl4ELAV like RNA binding protein 45125056848125200543Rat
6493177Agbl4AGBL carboxypeptidase 45125254963126534367Rat
1584958Bend5BEN domain containing 55126290648126336662Rat
628657Spata6spermatogenesis associated 65126593122126676557Rat
1311383Slc5a9solute carrier family 5 member 95126709762126733468Rat
1588696Skint8selection and upkeep of intraepithelial T cells 85126764502126773125Rat
1587579Skint1selection and upkeep of intraepithelial T cells 15126786469126814599Rat
1587570Rps4x-ps3ribosomal protein S4, X-linked, pseudogene 35126842634126843859Rat
1566327Skint2selection and upkeep of intraepithelial T cells 25126878834126909044Rat
2318761Skint4l1selection and upkeep of intraepithelial T cells 4 like 15126999449127181460Rat
1587555Zfp385b-ps1zinc finger protein 385B, pseudogene 15127270721127271910Rat
6490949Skint4selection and upkeep of intraepithelial T cells 45127320857127514355Rat
7546204Ankrd13c-ps1ankyrin repeat domain 13C, pseudogene 15127376753127380494Rat
11380980Skint5lselection and upkeep of intraepithelial T cells 5 like5127381307127435697Rat
6490490LOC100911818selection and upkeep of intraepithelial T-cells protein 10-like5127636227127678245Rat
7699232Dek-ps1DEK proto-oncogene, pseudogene 15127636795127645699Rat
1587504Skint10selection and upkeep of intraepithelial T cells 105127769022127811541Rat
41385175Traf3ip2-ps1Traf3 interacting protein 2, pseudogene 15127813498127814580Rat
1584918Eef1a1-ps9eukaryotic translation elongation factor 1 alpha 1, pseudogene 95127824597127825986Rat
1586386Trabd2bTraB domain containing 2B5127941198128158946Rat
1304642Foxd2forkhead box D25128427986128430709Rat
11398866LOC108351105uncharacterized LOC1083511055128430904128442177Rat
621727Foxe3forkhead box E35128444912128446494Rat
1310116Cmpk1cytidine/uridine monophosphate kinase 15128480301128507830Rat
1304972StilSTIL, centriolar assembly protein5128520837128573732Rat
1306748Tal1TAL bHLH transcription factor 1, erythroid differentiation factor5128586776128600976Rat
41126986LOC120102952uncharacterized LOC1201029525128612314128619258Rat
620952Pdzk1ip1PDZK1 interacting protein 15128618050128623131Rat
41400278Trnap-agg66transfer RNA proline (anticodon AGG) 665128635289128635369Rat
628719Cyp4x1cytochrome P450, family 4, subfamily x, polypeptide 15128651681128683338Rat
628846Cyp4a8cytochrome P450, family 4, subfamily a, polypeptide 85128702130128733476Rat
40981232Mcts1-ps1MCTS1, re-initiation and release factor, pseudogene 15128728574128729067Rat
1562603Cyp4a8-ps1cytochrome P450, family 4, subfamily a, polypeptide 8, pseudogene 15128827304128852403Rat
41096017Pkm-ps4pyruvate kinase M1/2, pseudogene 45128906060128907436Rat
41170167H3f3cl1H3 histone, family 3C like 15128921288128921701Rat
2479Cyp4a2cytochrome P450, family 4, subfamily a, polypeptide 25128922355128934188Rat
41339692Cyp4a2-ps1cytochrome P450, family 4, subfamily a, polypeptide 2, pseudogene 15128967020128975566Rat
41245892Pkm-ps5pyruvate kinase M1/2, pseudogene 55128992798128994173Rat
41174391H3f3l2H3.3 histone like 25129008176129008589Rat
41366809Cyp4a2l1cytochrome P450, family 4, subfamily a, polypeptide 2 like 15129010501129021087Rat
40980620Cyp4a2-ps2cytochrome P450, family 4, subfamily a, polypeptide 2, pseudogene 25129053886129062415Rat
1584917Pkm-ps13pyruvate kinase M1/2, pseudogene 135129079590129081630Rat
631356Cyp4a3cytochrome P450, family 4, subfamily a, polypeptide 35129097571129115488Rat
68945Cyp4a1cytochrome P450, family 4, subfamily a, polypeptide 15129123323129137464Rat
2480Cyp4b1cytochrome P450, family 4, subfamily b, polypeptide 15129139019129176860Rat
1584916Fdps-ps2farnesyl diphosphate synthase, pseudogene 25129169497129172588Rat
1310351Efcab14EF-hand calcium binding domain 145129218139129258628Rat
1585134Tex38testis expressed 385129260652129265086Rat
1305417Atpaf1ATP synthase mitochondrial F1 complex assembly factor 15129265789129292463Rat
1307821Mob3cMOB kinase activator 3C5129306255129315264Rat
1559603Mknk1MAPK interacting serine/threonine kinase 15129318128129357641Rat
1584061Kncnkinocilin5129363464129366907Rat
41051438Tmem275transmembrane protein 2755129376602129377135Rat
1308265Dmbx1diencephalon/mesencephalon homeobox 15129394221129403040Rat
61808Faahfatty acid amide hydrolase5129479774129499018Rat
1559652Nsun4NOP2/Sun RNA methyltransferase 45129511224129532498Rat
1305987Uqcrhubiquinol-cytochrome c reductase hinge protein5129545978129554173Rat
1311221Lrrc41leucine rich repeat containing 415129554547129575450Rat
1310600Rad54lRAD54 like5129575431129605100Rat
1566001Lurap1leucine rich adaptor protein 15129618926129628651Rat
1359396Pomgnt1protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)5129634274129644150Rat
1303308Tspan1tetraspanin 15129646139129659383Rat
6491750P3r3urfPIK3R3 upstream open reading frame5129656654129673140Rat
11457244Trnap-agg7transfer RNA proline (anticodon AGG) 75129690563129690637Rat
41345979LOC120103122uncharacterized LOC1201031225129690639129700956Rat
621042Pik3r3phosphoinositide-3-kinase regulatory subunit 35129700925129772591Rat
1304573Mast2microtubule associated serine/threonine kinase 25129776293129915502Rat
41291644LOC120103379U6 spliceosomal RNA5129832346129832452Rat
41075354LOC120103199U6 spliceosomal RNA5129952187129952290Rat
41245337Rpl7a-ps20ribosomal protein L7a, pseudogene 205129956798129962912Rat
1306299Ippintracisternal A particle-promoted polypeptide5129962528130001237Rat
1561569Tmem69transmembrane protein 695130004888130008466Rat
1359562Gpbp1l1GC-rich promoter binding protein 1-like 15130009768130050636Rat
1598211Ccdc17coiled-coil domain containing 175130051158130056676Rat
1359609Naspnuclear autoantigenic sperm protein5130057363130083003Rat
68346Akr1a1aldo-keto reductase family 1 member A15130092945130130277Rat
41326116LOC120103189U6 spliceosomal RNA5130107105130107211Rat
620039Prdx1peroxiredoxin 15130147258130162856Rat
1310806Mmachcmetabolism of cobalamin associated C5130166056130172735Rat
1564486Ccdc163coiled-coil domain containing 1635130172014130178934Rat
619984Tesk2testis associated actin remodelling kinase 25130178715130270594Rat
1582959Rps26l4ribosomal protein S26 like 45130239204130239590Rat
1309094Toe1target of EGR1, exonuclease5130270484130274050Rat
620045MutyhmutY DNA glycosylase5130274034130286149Rat
1310014Hpdl4-hydroxyphenylpyruvate dioxygenase-like5130286627130288233Rat
2320713Rps20-ps2ribosomal protein S20, pseudogene 25130298198130298740Rat
7649714LOC102550980uncharacterized LOC1025509805130311847130319039Rat
41199780LOC120103232U6 spliceosomal RNA5130338326130338430Rat
1310741Zswim5zinc finger, SWIM-type containing 55130346733130463791Rat
3946Uroduroporphyrinogen decarboxylase5130464695130468783Rat
1309823Hectd3HECT domain E3 ubiquitin protein ligase 35130469840130479802Rat
7638959LOC10255530740S ribosomal protein S12-like5130485611130486622Rat
620821Eif2b3eukaryotic translation initiation factor 2B subunit gamma5130492167130558692Rat
1309039Ptch2patched 25130571956130592506Rat
2320529Btbd19BTB domain containing 195130596966130605403Rat
1565942Dynlt4dynein light chain Tctex-type 45130605437130607224Rat
62039Plk3polo-like kinase 35130607142130612317Rat
1596200Best4bestrophin 45130622194130629045Rat
61910Rps8ribosomal protein S85130630362130632932Rat
41105011Snord38bsmall nucleolar RNA, C/D box 38B5130630642130630711Rat
41246695Snord38asmall nucleolar RNA, C/D box 38A5130631069130631136Rat
41375413Snord46small nucleolar RNA, C/D box 465130632015130632118Rat
41205584Snord55small nucleolar RNA, C/D box 555130632614130632692Rat
620239Kif2ckinesin family member 2C5130637347130662680Rat
41216010Trnaa-agc53transfer RNA alanine (anticodon AGC) 535130664760130664832Rat
41391363Rnu5f-1l1RNA, U5F small nuclear 1 like 15130667018130667133Rat
41150489LOC120103377U5 spliceosomal RNA5130673379130673494Rat
41012747LOC120103378U5 spliceosomal RNA5130680654130680769Rat
1563714Armh1armadillo-like helical domain containing 15130680955130722062Rat
1307066Tmem53transmembrane protein 535130721780130737692Rat
1598210Rnf220ring finger protein 2205130739173130961386Rat
1596047Rps13-ps2ribosomal protein S13, pseudogene 25130966577130967555Rat
1595859Eri3ERI1 exoribonuclease family member 35131016146131143347Rat
1311295Dmap1DNA methyltransferase 1-associated protein 15131143726131151760Rat
7691700LOC102553953uncharacterized LOC1025539535131201325131203990Rat
9186911Klf18lKruppel-like factor 18 like5131226565131228325Rat
1307711Klf17KLF transcription factor 175131293068131315878Rat
621243Slc6a9solute carrier family 6 member 95131374562131408733Rat
1562911Ccdc24coiled-coil domain containing 245131398766131412395Rat
41390291LOC120102957uncharacterized LOC1201029575131411481131417615Rat
1305358B4galt2beta-1,4-galactosyltransferase 25131412541131422573Rat
1308303Atp6v0bATPase H+ transporting V0 subunit B5131423384131424900Rat
1304634Dph2diphthamide biosynthesis 25131428434131431394Rat
620071Ipo13importin 135131433770131454044Rat
621427Artnartemin5131458596131470193Rat
68414St3gal3ST3 beta-galactoside alpha-2,3-sialyltransferase 35131470348131670794Rat
41129363LOC120102961uncharacterized LOC1201029615131488481131492415Rat
41119943LOC120102959uncharacterized LOC1201029595131567330131572307Rat
41337843LOC120102960uncharacterized LOC1201029605131587421131591432Rat
1306378Kdm4alysine demethylase 4A5131672754131719534Rat
3453Ptprfprotein tyrosine phosphatase, receptor type, F5131741959131824000Rat
7559302LOC102553423uncharacterized LOC1025534235131809376131814053Rat
1561416Hyihydroxypyruvate isomerase5131894575131897709Rat
1308616Szt2SZT2 subunit of KICSTOR complex5131897250131943953Rat
1305552Med8mediator complex subunit 85131948632131949516Rat
1587151Elovl1ELOVL fatty acid elongase 15131961478131965961Rat
620477Cdc20cell division cycle 205131966203131970406Rat
9354806LOC103692460uncharacterized LOC1036924605131970623131974793Rat
1311069MplMPL proto-oncogene, thrombopoietin receptor5131973895131987472Rat
41271559LOC120103206U6 spliceosomal RNA5131979522131979625Rat
7625538LOC102554074uncharacterized LOC1025540745131986391131999442Rat
621642Tie1tyrosine kinase with immunoglobulin-like and EGF-like domains 15132000013132019658Rat
1587100Tmem258l2transmembrane protein 258 like 25132041753132042174Rat
1587085Rps5-ps1ribosomal protein S5, pseudogene 15132042844132043482Rat
1305347C5h1orf210similar to human chromosome 1 open reading frame 2105132048755132051913Rat
1311937Tmem125transmembrane protein 1255132063162132064566Rat
1585948Cfap57cilia and flagella associated protein 575132074404132148102Rat
1305762Ebna1bp2EBNA1 binding protein 25132148164132152730Rat
11479750LOC108351020uncharacterized LOC1083510205132160198132164045Rat
1333931Or13p10olfactory receptor family 13 subfamily P member 105132186704132187651Rat
1332845Or13p9olfactory receptor family 13 subfamily P member 95132203917132204855Rat
1333749Or13p4olfactory receptor family 13 subfamily P member 45132216822132217769Rat
1333843Or13p3olfactory receptor family 13 subfamily P member 35132236461132237399Rat
1584354Or13p8bolfactory receptor family 13 subfamily P member 8B5132250763132255279Rat
1333211Or13p5olfactory receptor family 13 subfamily P member 55132261753132265386Rat
1333268Or10ak14bolfactory receptor family 10 subfamily AK member 14B5132271846132272793Rat
41245460LOC120093079olfactory receptor 2A12-like5132293815132294801Rat
1334007Or10ak14olfactory receptor family 10 subfamily AK member 145132312678132313619Rat
1584753Olfr1330-ps1olfactory receptor 1330, pseudogene 15132326454132327460Rat
1583684Or10ak11olfactory receptor family 10 subfamily AK member 115132345164132346165Rat
1333331Or10ak7bolfactory receptor family 5 subfamily AK member 7B5132373994132374941Rat
1332921Or10ak7folfactory receptor family 10 subfamily AK member 7F5132407421132408368Rat
1334318Or10ak13olfactory receptor family 10 subfamily AK member 135132435679132436626Rat
1333113Or10ak7eolfactory receptor family 10 subfamily AK member 7E5132462578132463525Rat
1332893Or10ak7olfactory receptor family 10 subfamily AK member 75132489097132490044Rat
1598117Mrs2-ps1magnesium transporter MRS2, pseudogene 15132496554132497918Rat
1334300Or10ak7d-ps1olfactory receptor family 10 subfamily AK member 7D, pseudogene 15132504419132505360Rat
1334256Or10ak7c-ps1olfactory receptor family 10 subfamily AK member 7C, pseudogene 15132519279132520219Rat
41360569Trnas-aga19transfer RNA serine (anticodon AGA) 195132530789132530871Rat
1333490Or10ak7g-ps1olfactory receptor family 10 subfamily AK member 7G, pseudogene 15132547785132548722Rat
1310787Lao1L-amino acid oxidase 15132573698132583591Rat
41378098LOC120103309small nucleolar RNA SNORA175132591434132591567Rat
6496493Ubb-ps1ubiquitin B, pseudogene 15132604603132605052Rat
11451090LOC108351140NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene5132695795132696187Rat
11512073LOC108351021uncharacterized LOC1083510215132706788132717161Rat
3704Slc2a1solute carrier family 2 member 15132717196132745416Rat
1308150Zfp691zinc finger protein 6915132780259132784954Rat
41031036LOC120102964uncharacterized LOC1201029645132783310132785888Rat
1309996Ermaperythroblast membrane associated protein (Scianna blood group)5132788847132803030Rat
1311232Svbpsmall vasohibin binding protein5132808021132813735Rat
1563015Tmem269transmembrane protein 2695132817324132836360Rat
1564804C5h1orf50similar to human chromosome 1 open reading frame 505132837135132841744Rat
628823P3h1prolyl 3-hydroxylase 15132841868132856664Rat
1305000Cldn19claudin 195132862939132870364Rat
61843Ybx1Y box binding protein 15132882137132898885Rat
1564921Ppihpeptidylprolyl isomerase H5132906324132924341Rat
1305604Ccdc30coiled-coil domain containing 305132926767133019635Rat
41262339Trnaa-agc98transfer RNA alanine (anticodon AGC) 985132993684132993764Rat
1311399Ppcsphosphopantothenoylcysteine synthetase5133023077133026899Rat
1307175Zmynd12zinc finger, MYND-type containing 125133026917133059985Rat
1306880Rimklaribosomal modification protein rimK-like family member A5133072179133098840Rat
1311770Foxj3forkhead box J35133140344133228489Rat
620240Rps27a-ps1ribosomal protein S27a, pseudogene 15133180227133180805Rat
2766Guca2aguanylate cyclase activator 2A5133237177133239019Rat
620044Guca2bguanylate cyclase activator 2B5133246891133248941Rat
1311252Hivep3HIVEP zinc finger 35133325327133727797Rat
41167248Pcgf6-ps1polycomb group ring finger 6, pseudogene 15133400653133401469Rat
1563049RGD1563049RGD15630495133468132133469525Rat
41141719LOC120102966uncharacterized LOC1201029665133567881133568432Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
60485D5Got421815124160767124160948Ratregion
5061592BF4021061095124215449124215558Ratregion
5086058AW5294381525124276148124276300Ratregion
60486D5Got431455124299554124299701Ratregion
11528622rs1974342915124399325124399325Ratregion
5508206D5Uwm732345124400291124400525Ratregion
5084422AI169557925124411200124411292Ratregion
10324D5Lev191835124411616124411799Ratregion
5501131PMC141153P23365124411869124412205Ratregion
5501127PMC141153P12715124415101124415371Ratregion
43954D5Got471855124456846124457033Ratregion
5062194BE1063001705124669402124669572Ratregion
6480634D5Uwm754975124712419124712918Ratregion
5070626RH1346101815124789784124789965Ratregion
5502405RH1247451585124789789124789947Ratregion
5038624AA959731985124789846124789944Ratregion
5038626AI5271411345124791424124791558Ratregion
5041354RH1288092065124791653124791859Ratregion
5053551RH1427141755124800896124801071Ratregion
5078816RH1405681865124804647124804833Ratregion
7206592Dmrta216095124808216124809825Ratregion
5135469D5Uwm722425125008980125009222Ratregion
39092D5Rat652125125037723125037935Ratregion
5024992BB464020855125057610125057695Ratregion
5500262D1S2299E875125058161125058248Ratregion
5087576PMC337033P21295125059245125059374Ratregion
5046508RH1317941945125067409125067603Ratregion
5086522BM3872141565125145934125146090Ratregion
7777093D5Mco581625125222967125223129Ratregion
43952D5Got452735125267791125268064Ratregion
11528621rs1986519875125309350125309350Ratregion
44552D9Wox211365125373973125374029Ratregion
5504068px-5c81565125426959125427115Ratregion
5036895AU0495451565125864606125864762Ratregion
5090031AU0495092075125981263125981470Ratregion
5060504BE1102361525126206402126206554Ratregion
5063320BF3987721205126296801126296921Ratregion
5089737AU0493331305126296934126297064Ratregion
5502701C1orf1651175126329451126329568Ratregion
5090703AU0499101935126386545126386738Ratregion
5066702AU0482011415126673606126673747Ratregion
5135467D5Uwm711465126673617126673763Ratregion
502795542.MMHAP10FF6.seq1805126675705126675885Ratregion
5057490BG375960905126709807126709897Ratregion
7206462Slc5a97335126709844126710577Ratregion
11528623rs1056922315126768268126768268Ratregion
44552D9Wox211365126986761126986815Ratregion
5076002RH1389202185127376448127376666Ratregion
5027261AI5056521465127378841127378987Ratregion
5027421AI988026905127469769127469859Ratregion
40018D5Rat1652035127746389127746592Ratregion
6480632D5Uwm741575127833594127833751Ratregion
38338D5Rat1081855128033842128034027Ratregion
7365009rs10583564305128071929128071929Ratregion
5026786RH1335232025128158643128158846Ratregion
5046088RH1315518955128217728128218623Ratregion
5085044AI2376341365128337806128337942Ratregion
43962D5Got501305128398386128398516Ratregion
5067068AU0479841315128425977128426108Ratregion
7206600Foxd29435128428216128429159Ratregion
7206602Foxe33905128445627128446017Ratregion
39606D5Rat1642125128477950128478162Ratregion
43964D5Got572115128486224128486435Ratregion
36187D5Rat301625128499722128499884Ratregion
5078314RH1402692035128515849128516052Ratregion
5085896AW5358801615128562572128562733Ratregion
5073012RH1371832505128573362128573612Ratregion
60490D5Got512285128579225128579453Ratregion
5081537BE1172641815128592686128592867Ratregion
5042526RH1294881655128600753128600918Ratregion
69561D5Uwm352395128627218128627457Ratregion
5083833AA8930112345128702186128702420Ratregion
5071374RH1350451815128702633128702814Ratregion
5046172RH1316001805128923713128923893Ratregion
10453D5Mcw15128924597128924722Ratregion
10454D5Wox121185128924607128924723Ratregion
5080424RH1415711895128932273128932462Ratregion
5046172RH1316001805129010601129010781Ratregion
5080424RH1415711895129019159129019348Ratregion
5046172RH1316001805129098021129098201Ratregion
10453D5Mcw15129098900129099033Ratregion
10454D5Wox121185129098910129099034Ratregion
5080424RH1415711895129113516129113665Ratregion
34583D5Rjr11745129132428129132602Ratregion
34581D5Mgh272285129132447129132675Ratregion
5025654RH1291462005129137262129137462Ratregion
5072970RH1371591515129139100129139251Ratregion
41704D5Rat2002005129140953129141153Ratregion
5063866BE1201091515129218313129218464Ratregion
5082959BF3904891705129223605129223775Ratregion
5044428RH1305972105129290909129291119Ratregion
5043224RH1299032055129293297129293502Ratregion
5044026RH1303672165129314837129315053Ratregion
66424D5Mco73265129320195129320521Ratregion
5062958BI3010141535129339283129339435Ratregion
43967D5Got552305129379994129380224Ratregion
41630D5Rat1991115129390389129390500Ratregion
35060D5Rat291685129406121129406289Ratregion
42756D5Rat2611835129410089129410272Ratregion
42757D5Rat2351935129441624129441817Ratregion
5089697AU0493092335129454661129454896Ratregion
5049612RH1335812025129480048129480250Ratregion
5046814RH1319701825129480995129481177Ratregion
5502172MARC_7381-7382:996687840:1985129484171129485414Ratregion
5081250RH1420521935129509694129509887Ratregion
5047628RH1324372205129513373129513593Ratregion
5082497BF4161251045129533011129533115Ratregion
5043010RH1297771835129546053129546236Ratregion
5064962BE1087731785129547404129547582Ratregion
5039030RH1274722185129575169129575387Ratregion
5084856AI2359971135129610874129610987Ratregion
5030111BE1104471715129614175129614346Ratregion
5063684BE1079671735129619479129619652Ratregion
502793936.MMHAP9FRD12.seq1745129625990129626164Ratregion
5499675MARC_7377-7378:992008389:13855129639150129639535Ratregion
5075586RH1386791255129647117129647242Ratregion
5056241RH1442651245129700290129700414Ratregion
41686D5Rat2012165129712378129712586Ratregion
5033563RH1392821225129771669129771791Ratregion
5038628AA414954805129772164129772244Ratregion
5044374RH1305661955129772352129772547Ratregion
5071786RH1352832095129774636129774845Ratregion
5080070RH1413651865129776379129776565Ratregion
5066760AU0481672155129866293129866508Ratregion
5076180RH1390261315129999661129999792Ratregion
5078126RH1401581835129999771129999954Ratregion
5051096RH1344372195130000581130000800Ratregion
5048362RH1328601955130004946130005141Ratregion
5056275RH1442841355130052194130052329Ratregion
5040600RH1283761825130056344130056526Ratregion
5060370AW5318461745130057396130057570Ratregion
5500599RH1361509705130058470130059440Ratregion
5070490Prdx1705130154646130156228Ratregion
5070490Prdx1705130156177130156228Ratregion
5080788RH1417822045130166555130166759Ratregion
5075856RH1388362065130210479130210685Ratregion
5089441AU0491581925130216523130216715Ratregion
5501980MARC_21798-21799:1025034200:13165130267477130267793Ratregion
5041284RH1287681505130270351130270501Ratregion
5086247AA9570481845130270585130270769Ratregion
5080526RH1416301705130285035130286093Ratregion
5072984RH1371672205130286628130286848Ratregion
5066046BI3041561875130288704130288891Ratregion
5068370AU0471871485130352168130352316Ratregion
5083313BF4176501155130427355130427470Ratregion
5089549AU0492212225130432062130433042Ratregion
5029627BE1017482055130462668130462873Ratregion
5063384BF3988351605130463311130463471Ratregion
5071688RH1352272175130465465130465682Ratregion
5501816MARC_13905-13906:1007570719:16495130471126130471775Ratregion
5062666BF4037241075130477886130477993Ratregion
5043428RH1300201805130478299130478479Ratregion
5038630AW8220002515130479423130479674Ratregion
5064904BF4052631345130479505130479639Ratregion
60491D5Got521805130517403130517585Ratregion
5501998MARC_23422-23423:1025023955:36175130586175130586792Ratregion
5025658RH1291631925130607151130607343Ratregion
5089063AU0489332005130620272130620472Ratregion
5088601AU0486671975130620275130620472Ratregion
5080824RH1418041805130637485130637665Ratregion
5503256UniSTS:23755610885130645951130647039Ratregion
5072280RH1367581835130720595130720778Ratregion
5028895RH1427312335130721158130721391Ratregion
5065200BE1211451905130827004130827194Ratregion
41288D5Rat1661715130881210130881381Ratregion
5030329BE1058591895130927292130927478Ratregion
5066878AU0480972245131081556131081780Ratregion
5029633BF3864182095131121135131121346Ratregion
5030815BE1203221855131139870131140055Ratregion
5040302RH1282051805131142912131143092Ratregion
43971D5Got561905131284754131284944Ratregion
33680D5Mit132045131345754131345958Ratregion
5088733AU0487472995131352840131353141Ratregion
43968D5Got591785131352850131353030Ratregion
1633333D5Wox292225131372552131372774Ratregion
33731D5Mit141735131378081131378254Ratregion
1628544D5Wox281545131392020131392174Ratregion
5084038AA9434401925131399543131399735Ratregion
5054871RH1434731775131405819131405996Ratregion
5087887Glyt12065131408382131408588Ratregion
5081018RH1419171805131408476131408656Ratregion
5034552BE1194261795131409081131409260Ratregion
5502174MARC_7369-7370:996687826:16505131416164131416814Ratregion
5026228RH1314061865131423416131423602Ratregion
5507059UniSTS:2242831045131423456131423560Ratregion
5079828RH1412262705131433780131434048Ratregion
7365011rs1345215505131443083131443083Ratregion
5076688RH1393211545131470364131470518Ratregion
41388D5Rat1671325131581900131582032Ratregion
5084426AI1695731005131586261131586361Ratregion
5063232BF4105401635131666124131666287Ratregion
5086295BQ2054791905131671841131672031Ratregion
5505812UniSTS:49540514285131693710131695138Ratregion
5029811BE1028271775131693813131693990Ratregion
5074068RH1378001215131696381131696502Ratregion
5026074RH1308091925131741998131742190Ratregion
5076214RH1390451845131742936131743120Ratregion
5507169UniSTS:2249081775131743133131743310Ratregion
5507013fj50d02.y12385131745458131745796Ratregion
5058854BF3871872065131813851131814057Ratregion
69509D5Uwm591885131830143131830331Ratregion
41448D5Rat1681815131837785131837966Ratregion
5026956RH1341762725131896955131897227Ratregion
5055691RH1439471345131897304131897438Ratregion
5027591BB151133925131965773131965865Ratregion
5084942AA9633881545131965784131965938Ratregion
1631411D5Wox401715131965869131966040Ratregion
5505921UniSTS:496549945131966929131967934Ratregion
5058906BF3872161695131971506131971675Ratregion
5505042Mpl8625131985255131986117Ratregion
5073336RH1373771855132000011132000196Ratregion
5506177UniSTS:498727675132005377132005444Ratregion
5039486RH1277331855132051511132051696Ratregion
5064566BE1081241845132061064132061248Ratregion
5054881RH1434782675132061987132062254Ratregion
43969D5Got583125132081000132081312Ratregion
5032951RH1370783205132152339132152659Ratregion
69569D5Uwm381885132207401132207589Ratregion
5089795AU0493682485132207978132208226Ratregion
5505686UniSTS:4893139545132254325132255279Ratregion
5030255BE1115832155132497971132498186Ratregion
39352D5Rat872435132649285132649528Ratregion
36711D5Rat321595132686313132686472Ratregion
38828D5Rat902035132691196132691399Ratregion
5051993RH947772215132711415132711636Ratregion
7192216Slc2a17645132740566132741330Ratregion
11303D5Wox111285132743341132743469Ratregion
7206636Slc2a105132743856132745113Ratregion
11304D5Arb72325132744136132744368Ratregion
5088098Slc2a11925132744921132745113Ratregion
5050472RH1340762175132748041132748258Ratregion
5032263AI8511621285132813332132813460Ratregion
5033083RH1375291285132837190132837318Ratregion
5052927RH1423541605132837594132837754Ratregion
5054093RH1430261155132843041132843156Ratregion
5505438Lepre13985132856190132856588Ratregion
5058472BE0962161695132870208132870377Ratregion
5061642BF3969601835132890613132890796Ratregion
5075004RH1383431525132912194132912346Ratregion
43970D5Got612795132914427132914706Ratregion
36677D5Rat311745133011384133011550Ratregion
5040722RH1284462155133023188133023403Ratregion
5048940RH1331941855133072268133072453Ratregion
7365017rs1345061005133072688133072688Ratregion
5057800BE1015701535133074366133074519Ratregion
43972D5Got601955133114545133114740Ratregion
5032971RH1371552165133139331133139547Ratregion
5499847UniSTS:2350162235133225840133226063Ratregion
5028767RH1422541665133228199133228365Ratregion
5028813RH1424277215133238070133238791Ratregion
5070017RH944201605133238841133239001Ratregion
1627083Ugn8445133246937133247781Ratregion
7365013rs10512711105133403440133403440Ratregion
5055997RH1441232255133469099133469324Ratregion
34220D5Mgh131485133529271133529419Ratregion
39372D5Rat2022455133529288133529533Ratregion
1635260D5Got2701285133649747133649875Ratregion
5060482BE1102001525133725776133725928Ratregion
37362D5Rat862335133749410133749643Ratregion
Position Markers

Flank 1: (D5Got42)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25124,160,767 - 124,160,948 (+)MAPPER
Rnor_6.05129,038,716 - 129,038,896NCBI
Rnor_5.05132,878,119 - 132,878,299UniSTS
RGSC_v3.45130,756,424 - 130,756,605RGD
RGSC_v3.45130,756,425 - 130,756,605UniSTS
RGSC_v3.15130,761,651 - 130,761,831RGD
Celera5122,889,918 - 122,890,098UniSTS
RH 3.4 Map5814.0RGD
RH 3.4 Map5814.0UniSTS
Flank 2: (D5Rat86)
Rat AssemblyChrPosition (strand)Source
GRCr85139,034,670 - 139,034,903 (+)Marker Load Pipeline
mRatBN7.25133,749,410 - 133,749,643 (+)MAPPER
Rnor_6.05139,098,997 - 139,099,229NCBI
Rnor_5.05142,889,320 - 142,889,552UniSTS
RGSC_v3.45140,740,721 - 140,741,152RGD
RGSC_v3.45140,740,781 - 140,741,013UniSTS
RGSC_v3.15140,746,007 - 140,746,239RGD
Celera5132,307,710 - 132,307,942UniSTS
RH 3.4 Map5867.2RGD
RH 3.4 Map5867.2UniSTS
RH 2.0 Map5874.1RGD
SHRSP x BN Map571.7299RGD
FHH x ACI Map570.92RGD
Cytogenetic Map5q36UniSTS


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
11528624Bss114Bone structure and strength QTL 1146.543e-07femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5124399325126768268Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
7794739Bp372Blood pressure QTL 3720.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5117913688125222967Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128071929134724733Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5128033842133011550Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general orthologous to 1p32 locus in humans which is frequently deleted in breast cancer 7364727
qtl_general measurement method: animals were examined for palpable mammary tumors 7 weeks after the E2 treatment, size and location was recorded; animals were killed when the tumors were ~2 cm 7364727
qtl_general inducing agent: 17beta-estradiol (E2) for 196 days 7364727