Mir207 (microRNA 207) - Rat Genome Database

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Gene: Mir207 (microRNA 207) Rattus norvegicus
Analyze
Symbol: Mir207
Name: microRNA 207
RGD ID: 2325370
Description:
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-207
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8560,638,796 - 60,638,873 (+)NCBIGRCr8
mRatBN7.2555,842,806 - 55,842,883 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl555,842,806 - 55,842,883 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx557,808,474 - 57,808,551 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0559,627,635 - 59,627,712 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0559,621,725 - 59,621,802 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0557,028,859 - 57,028,936 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,028,859 - 57,028,936 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0561,562,680 - 61,562,757 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera554,454,998 - 54,455,075 (+)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:16274478   PMID:16381832   PMID:20403161   PMID:26232047   PMID:33577033  



.

Predicted Targets
Summary Value
Count of predictions:7275
Count of gene targets:4999
Count of transcripts:5386
Interacting mature miRNAs:rno-miR-207
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat

1 to 10 of 35 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 5 24 76 28 31 12 19 12 88 54 68 18 32 19


RefSeq Transcripts NR_032107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053719
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl555,842,806 - 55,842,883 (+)Ensembl
Rnor_6.0 Ensembl557,028,859 - 57,028,936 (+)Ensembl
RefSeq Acc Id: NR_032107
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8560,638,796 - 60,638,873 (+)NCBI
mRatBN7.2555,842,806 - 55,842,883 (+)NCBI
Rnor_6.0557,028,859 - 57,028,936 (+)NCBI
Rnor_5.0561,562,680 - 61,562,757 (+)NCBI
Celera554,454,998 - 54,455,075 (+)NCBI
Sequence:

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-41588 BioCyc
Ensembl Genes ENSRNOG00000035596 Ensembl
miRBase MI0003479 ENTREZGENE
NCBI Gene 100314253 ENTREZGENE
PhenoGen Mir207 PhenoGen
RatGTEx ENSRNOG00000035596 RatGTEx
RNAcentral URS0000759BD0 RNACentral
  URS000075D890 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir207  microRNA 207  Mir207  microRNA mir-207  Name updated 61478 APPROVED
2010-06-02 Mir207  microRNA mir-207      Symbol and Name status set to provisional 70820 PROVISIONAL