Rf54 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Rf54 (Renal function QTL 54) Rattus norvegicus

Symbol: Rf54
Name: Renal function QTL 54
RGD ID: 1581505
Trait: kidney physiology trait   (VT:0002136)    
Measurement Type: kidney 20-HETE level   (CMO:0001854)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25128,033,842 - 133,011,550RGD_MAPPER_PIPELINE
Rnor_6.05133,313,668 - 138,454,239RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05137,107,818 - 142,265,366RGDRnor5.0
RGSC_v3.45134,871,897 - 139,996,194RGDRGSC3.4
RGSC_v3.15134,877,128 - 140,001,420RGD
Cross Type: Not Available
Strains Crossed: SS.LEW-(D5Rat130-D5Rat31)/JrMcwi SS.LEW-(D5Rat130-D5Rat108)/JrMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Cyp4a2 is a candidate Gene for Rf54
Cyp4a1 is a candidate Gene for Rf54
Cyp4a8 is a candidate Gene for Rf54
Cyp4a3 is a candidate Gene for Rf54

Disease Annotations     Click to see Annotation Detail View

Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
1. Roman RJ, etal., Am J Physiol Renal Physiol. 2006 Jan 5;.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1586386Trabd2bTraB domain containing 2B5133220986133437151Rat
7579364LOC102550979uncharacterized LOC1025509795133480487133498499Rat
7649148LOC102551075uncharacterized LOC1025510755133644644133654906Rat
1304642Foxd2forkhead box D25133707194133710186Rat
11398866LOC108351105uncharacterized LOC1083511055133709711133713298Rat
621727Foxe3forkhead box E35133724796133725656Rat
1310116Cmpk1cytidine/uridine monophosphate kinase 15133759722133786452Rat
7569278LOC102551375uncharacterized LOC1025513755133799162133803319Rat
1304972StilSTIL, centriolar assembly protein5133819302133851362Rat
1306748Tal1TAL bHLH transcription factor 1, erythroid differentiation factor5133864401133878604Rat
620952Pdzk1ip1PDZK1 interacting protein 15133895849133900720Rat
628719Cyp4x1cytochrome P450, family 4, subfamily x, polypeptide 15133929532133959447Rat
628846Cyp4a8cytochrome P450, family 4, subfamily a, polypeptide 85133978953134008255Rat
1562603RGD1562603hypothetical gene supported by NM_0316055134110784134123734Rat
1584917LOC366444similar to Pyruvate kinase isozyme M25134178742134180127Rat
7552575LOC102553327histone H3.3C-like5134193924134195377Rat
2479Cyp4a2cytochrome P450, family 4, subfamily a, polypeptide 25134196910134207888Rat
11457733LOC108351019uncharacterized LOC1083510195134214622134222087Rat
6491947Faahlfatty-acid amide hydrolase-like5134330204134349400Rat
7720569LOC102553756sperm head and tail associated protein-like5134377546134382593Rat
7691700LOC102553953uncharacterized LOC1025539535134414151134424460Rat
1594706LOC690554similar to HesB protein5134426154134426708Rat
7705627LOC102554130uncharacterized LOC1025541305134437704134460438Rat
9186911LOC103690754zinc finger protein 606-like5134442047134444833Rat
631356Cyp4a3cytochrome P450, family 4, subfamily a, polypeptide 35134468666134484851Rat
68945Cyp4a1cytochrome P450, family 4, subfamily a, polypeptide 15134492734134507158Rat
2480Cyp4b1cytochrome P450, family 4, subfamily b, polypeptide 15134508728134526103Rat
1584916LOC366447similar to farnesyl diphosphate synthetase5134542203134543849Rat
1310351Efcab14EF-hand calcium binding domain 145134594012134632168Rat
1585134Tex38testis expressed 385134635913134641376Rat
1305417Atpaf1ATP synthase mitochondrial F1 complex assembly factor 15134641618134667079Rat
9365467LOC103692454uncharacterized LOC1036924545134658778134663829Rat
1307821Mob3cMOB kinase activator 3C5134679850134687899Rat
1559603Mknk1MAPK interacting serine/threonine kinase 15134691852134730887Rat
1584061Kncnkinocilin5134736603134744739Rat
1308265Dmbx1diencephalon/mesencephalon homeobox 15134767436134792840Rat
61808Faahfatty acid amide hydrolase5134852899134872095Rat
1559652Nsun4NOP2/Sun RNA methyltransferase 45134885377134905492Rat
1584915LOC366449hypothetical LOC3664495134910128134911103Rat
1305987Uqcrhubiquinol-cytochrome c reductase hinge protein5134919040134927235Rat
1311221Lrrc41leucine rich repeat containing 415134927609134948530Rat
1310600Rad54lRAD54 like5134948511134978125Rat
1566001Lurap1leucine rich adaptor protein 15134991997135001720Rat
1359396Pomgnt1protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)5135007343135017220Rat
1303308Tspan1tetraspanin 15135019206135032412Rat
6491750P3r3urfPIK3R3 upstream open reading frame5135029480135046282Rat
11457244Trnap-agg7transfer RNA proline (anticodon AGG) 75135063657135063725Rat
621042Pik3r3phosphoinositide-3-kinase regulatory subunit 35135069972135145633Rat
1304573Mast2microtubule associated serine/threonine kinase 25135149336135285337Rat
1306299Ippintracisternal A particle-promoted polypeptide5135351767135390363Rat
1561569Tmem69transmembrane protein 695135394013135397591Rat
1359562Gpbp1l1GC-rich promoter binding protein 1-like 15135398926135439772Rat
9126678LOC103692457uncharacterized LOC1036924575135399050135411874Rat
1598211Ccdc17coiled-coil domain containing 175135440276135445794Rat
1359609Naspnuclear autoantigenic sperm protein5135446485135472113Rat
68346Akr1a1aldo-keto reductase family 1 member A15135482068135498693Rat
620039Prdx1peroxiredoxin 15135536413135551986Rat
1310806Mmachcmetabolism of cobalamin associated C5135555587135561723Rat
1564486Ccdc163coiled-coil domain containing 1635135562034135568067Rat
619984Tesk2testis associated actin remodelling kinase 25135574172135659842Rat
1582959LOC688948similar to ribosomal protein S265135628379135628765Rat
1309094Toe1target of EGR1, exonuclease5135659733135663299Rat
620045MutyhmutY DNA glycosylase5135663328135675348Rat
1310014Hpdl4-hydroxyphenylpyruvate dioxygenase-like5135675826135677432Rat
7653686LOC102550714uncharacterized LOC1025507145135679532135685912Rat
2320713LOC100361148ribosomal protein S20-like5135687404135687938Rat
7649714LOC102550980uncharacterized LOC1025509805135702036135708778Rat
9080733LOC103692474basic proline-rich protein-like5135732670135737038Rat
1310741Zswim5zinc finger, SWIM-type containing 55135735825135854525Rat
7746807LOC10255111160S ribosomal protein L18-like5135812653135814829Rat
3946Uroduroporphyrinogen decarboxylase5135855429135859515Rat
1309823Hectd3HECT domain E3 ubiquitin protein ligase 35135860578135870535Rat
7638959LOC10255530740S ribosomal protein S12-like5135876933135877355Rat
620821Eif2b3eukaryotic translation initiation factor 2B subunit gamma5135882946135949276Rat
1309039Ptch2patched 25135962252135983816Rat
2320529Btbd19BTB domain containing 195135988549135994985Rat
1565942Dynlt4dynein light chain Tctex-type 45135995128135997807Rat
62039Plk3polo-like kinase 35135997725136002900Rat
1596200Best4bestrophin 45136013978136017742Rat
61910Rps8ribosomal protein S85136020941136023511Rat
620239Kif2ckinesin family member 2C5136027923136053268Rat
1563714Armh1armadillo-like helical domain containing 15136073056136112344Rat
1307066Tmem53transmembrane protein 535136112417136127976Rat
1598210Rnf220ring finger protein 2205136129457136351752Rat
9382807LOC103692458E3 ubiquitin-protein ligase Rnf220 pseudogene5136342187136353052Rat
1596047LOC690462hypothetical protein LOC6904625136356924136357528Rat
1595859Eri3ERI1 exoribonuclease family member 35136406009136533408Rat
1311295Dmap1DNA methyltransferase 1-associated protein 15136533791136541795Rat
11503680LOC108351139uncharacterized LOC1083511395136543521136551978Rat
1307711Klf17Kruppel-like factor 175136602472136610058Rat
621243Slc6a9solute carrier family 6 member 95136669674136703702Rat
1562911Ccdc24coiled-coil domain containing 245136691655136707197Rat
1305358B4galt2beta-1,4-galactosyltransferase 25136707510136717345Rat
1308303Atp6v0bATPase H+ transporting V0 subunit B5136718352136719868Rat
1304634Dph2diphthamide biosynthesis 25136723398136726358Rat
620071Ipo13importin 135136728744136749187Rat
621427Artnartemin5136759717136765036Rat
68414St3gal3ST3 beta-galactoside alpha-2,3-sialyltransferase 35136765309136965642Rat
7747039LOC102553361uncharacterized LOC1025533615136822886136835096Rat
1306378Kdm4alysine demethylase 4A5136967650137014402Rat
3453Ptprfprotein tyrosine phosphatase, receptor type, F5137036936137112930Rat
7559302LOC102553423uncharacterized LOC1025534235137100591137109028Rat
9278649LOC103692475UPF0585 protein C16orf13 homolog pseudogene5137129357137129904Rat
1561416Hyihydroxypyruvate isomerase5137189440137192125Rat
1308616Szt2SZT2 subunit of KICSTOR complex5137192120137238384Rat
1305552Med8mediator complex subunit 85137243094137243978Rat
1587151Elovl1ELOVL fatty acid elongase 15137255868137260486Rat
620477Cdc20cell division cycle 205137260728137264931Rat
9354806LOC103692460uncharacterized LOC1036924605137265071137266240Rat
1311069MplMPL proto-oncogene, thrombopoietin receptor5137268412137282032Rat
7625538LOC102554074uncharacterized LOC1025540745137281000137294470Rat
621642Tie1tyrosine kinase with immunoglobulin-like and EGF-like domains 15137294544137321116Rat
1587100LOC679583similar to UPF0197 protein C11orf10 homolog5137350471137350873Rat
1587085LOC679598hypothetical protein LOC6795985137351550137352188Rat
1305347RGD1305347similar to RIKEN cDNA 2610528J115137356777137360636Rat
1311937Tmem125transmembrane protein 1255137371825137373229Rat
1585948Cfap57cilia and flagella associated protein 575137383065137458594Rat
6487330LOC100912375probable rRNA-processing protein EBP2-like5137458672137463255Rat
1305762Ebna1bp2EBNA1 binding protein 25137458692137463255Rat
1333931Olr855olfactory receptor 8555137496367137499514Rat
6486433LOC100912529olfactory receptor 2B6-like5137564607137565560Rat
1333211Olr859olfactory receptor 8595137572031137575664Rat
1333268Olr860olfactory receptor 8605137583661137584608Rat
1334007Olr862olfactory receptor 8625137602530137603471Rat
1584753Olfr1330-ps1olfactory receptor 1330, pseudogene 15137616305137617311Rat
1583684LOC679803similar to olfactory receptor Olr8695137635013137636002Rat
1585948Cfap57cilia and flagella associated protein 575137652118137670067Rat
11479750LOC108351020uncharacterized LOC1083510205137681696137685602Rat
6497677LOC100910606olfactory receptor 2A5-like5137707416137710564Rat
1332845Olr856olfactory receptor 8565137725395137726333Rat
1333749Olr857olfactory receptor 8575137738298137739246Rat
1333843Olr858olfactory receptor 8585137757938137758876Rat
1584354LOC686209similar to olfactory receptor 13405137775801137776754Rat
1333331Olr865olfactory receptor 8655137812062137815850Rat
1332921Olr866olfactory receptor 8665137845489137846436Rat
1334318Olr867olfactory receptor 8675137873745137875662Rat
2318892LOC100362090ribosomal protein L36-like5137895900137896277Rat
1333113Olr868olfactory receptor 8685137900643137901590Rat
1332893Olr869olfactory receptor 8695137927160137928107Rat
1598117LOC679953similar to MRS2-like, magnesium homeostasis factor5137934502137935973Rat
1334300Olr870-psolfactory receptor pseudogene 8705137942482137943423Rat
1334256Olr871-psolfactory receptor pseudogene 8715137957338137958278Rat
1333490Olr872-psolfactory receptor pseudogene 8725137985849137986786Rat
1310787Lao1L-amino acid oxidase 15138011760138021653Rat
6496493LOC100910768ubiquitin-40S ribosomal protein S27a-like5138042662138043110Rat
11451090LOC108351140NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 pseudogene5138133278138133670Rat
11512073LOC108351021uncharacterized LOC1083510215138145329138154607Rat
3704Slc2a1solute carrier family 2 member 15138154677138182897Rat
1308150Zfp691zinc finger protein 6915138217841138222534Rat
1309996Ermaperythroblast membrane associated protein (Scianna blood group)5138227168138240509Rat
1311232Svbpsmall vasohibin binding protein5138245639138251353Rat
1563015Tmem269transmembrane protein 2695138254946138272589Rat
1564804RGD1564804similar to chromosome 1 open reading frame 505138274907138279285Rat
628823P3h1prolyl 3-hydroxylase 15138279597138294280Rat
1305000Cldn19claudin 195138300692138307982Rat
61843Ybx1Y box binding protein 15138319754138336721Rat
1564921Ppihpeptidylprolyl isomerase H5138343934138361743Rat
9266844LOC103692462uncharacterized LOC1036924625138361740138369767Rat
1305604Ccdc30coiled-coil domain containing 305138364211138462922Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10453D5Mcw15134469641134469771Ratregion
10453D5Mcw15134197895134198019Ratregion
10454D5Wox121185134469651134469772Ratregion
10454D5Wox121185134197905134198020Ratregion
34581D5Mgh272445134502140134502367Ratregion
34583D5Rjr11905134502121134502294Ratregion
11303D5Wox111285138180823138180950Ratregion
11304D5Arb72325138181618138181849Ratregion
33680D5Mit132025136640731136640934Ratregion
33731D5Mit141895136673054136673226Ratregion
36187D5Rat301605133778372133778531Ratregion
36677D5Rat311745138454074138454239Ratregion
36711D5Rat321645138123799138123957Ratregion
35060D5Rat291705134779329134779496Ratregion
39606D5Rat1642205133757372133757583Ratregion
38338D5Rat1081995133313668133313852Ratregion
38828D5Rat902085138128680138128882Ratregion
39352D5Rat872355138087339138087581Ratregion
42756D5Rat2612015134783297134783479Ratregion
42757D5Rat2352015134814836134815028Ratregion
41288D5Rat1661675136271682136271852Ratregion
41388D5Rat1671285136876851136876982Ratregion
41448D5Rat1681755137133874137134054Ratregion
41630D5Rat1991275134763605134763715Ratregion
41686D5Rat2012165135085475135085682Ratregion
41704D5Rat2002085134510644134510843Ratregion
43962D5Got501305133677589133677718Ratregion
43964D5Got572115133765646133765856Ratregion
43967D5Got552385134753237134753466Ratregion
43968D5Got591785136647827136648004Ratregion
43969D5Got583185137389672137389983Ratregion
43970D5Got612795138351877138352155Ratregion
43971D5Got561905136579741136579930Ratregion
60490D5Got512275133856856133857083Ratregion
60491D5Got521805135908126135908305Ratregion
69509D5Uwm592005137126235137126422Ratregion
69561D5Uwm352385133904785133905023Ratregion
69569D5Uwm381805137728878137729065Ratregion
69569D5Uwm381805137518236137518423Ratregion
66424D5Mco73125134693892134694217Ratregion
1631411D5Wox405137260395137260565Ratregion
1628544D5Wox285136686993136687146Ratregion
1633333D5Wox292225136667525136667746Ratregion
7365009rs10583564305133351969133351969Ratregion
7365011rs1345215505136738047136738047Ratregion
5038628AA414954805135145207135145286Ratregion
5038630AW8220002515135870157135870407Ratregion
7206600Foxd29435133707425133708367Ratregion
7206602Foxe33905133724830133725219Ratregion
7206636Slc2a105138181338138182594Ratregion
5039030RH1274722185134948250134948467Ratregion
5026074RH1308091925137036976137037167Ratregion
5026228RH1314061865136718385136718570Ratregion
5028895RH1427312335136111441136111673Ratregion
5034552BE1194261795136704051136704229Ratregion
5026786RH1335232035133438380133438582Ratregion
5032263AI8511621325138250951138251078Ratregion
5026956RH1341761865137191826137192097Ratregion
5029627BE1017482055135853403135853607Ratregion
5029633BF3864182095136511229136511437Ratregion
5029811BE1028271775136988696136988872Ratregion
5027591BB151133925137260299137260390Ratregion
5030111BE1104471705134987249134987419Ratregion
5032951RH1370781845137674341137674659Ratregion
5032951RH1370781845137462865137463184Ratregion
5030255BE1115832155137936035137936249Ratregion
5030329BE1058591895136317636136317824Ratregion
5033083RH1375291285138274815138274942Ratregion
502793936.MMHAP9FRD12.seq1745134999060134999233Ratregion
5030815BE1203221845136529932136530116Ratregion
5033563RH1392821225135144712135144833Ratregion
5025654RH1291462005134506953134507152Ratregion
5025658RH1291631925135997735135997926Ratregion
5051993RH947772215138148897138149117Ratregion
5054871RH1434731775136700789136700965Ratregion
5054881RH1434782675137370651137370917Ratregion
5056241RH1442651245135073388135073511Ratregion
5056275RH1442841355135441313135441447Ratregion
5058854BF3871872065137108822137109027Ratregion
5058906BF3872161695137266032137266200Ratregion
5055691RH1439471345137192175137192308Ratregion
5058472BE0962161695138307827138307995Ratregion
5054093RH1430261155138280666138280780Ratregion
5050472RH1340762175138185517138185733Ratregion
5052927RH1423541605138275219138275378Ratregion
5051096RH1344372195135389708135389926Ratregion
5043428RH1300201805135869033135869212Ratregion
5041284RH1287681505135659601135659750Ratregion
5044026RH1303672165134688536134688751Ratregion
5046088RH1315512025133497486133498380Ratregion
5044374RH1305661955135145395135145589Ratregion
5044428RH1305972105134664433134664642Ratregion
5046172RH1316001805134468762134468941Ratregion
5046172RH1316001805134197011134197190Ratregion
5047628RH1324372205134886444134886663Ratregion
5047628RH1324372205134363747134363966Ratregion
5046814RH1319701825134854071134854252Ratregion
5046814RH1319701825134331376134331557Ratregion
5048362RH1328601955135394072135394266Ratregion
5042526RH1294881655133878382133878546Ratregion
5049612RH1335812025134853124134853325Ratregion
5049612RH1335812025134330429134330630Ratregion
5039486RH1277331855137360223137360407Ratregion
5040600RH1283761825135445463135445644Ratregion
5043224RH1299032055134666821134667025Ratregion
7192216Slc2a1765138178048138178811Ratregion
5040302RH1282051805136532974136533153Ratregion
5043010RH1297771835134919116134919298Ratregion
5075004RH1383431525138349644138349795Ratregion
5074068RH1378001215136991264136991384Ratregion
5075586RH1386791255135020185135020309Ratregion
5075856RH1388362065135599658135599863Ratregion
5072280RH1367581835136110878136111060Ratregion
5076180RH1390261315135388788135388918Ratregion
5076214RH1390451845137037914137038097Ratregion
5076688RH1393211545136765326136765479Ratregion
5078126RH1401581855135388898135389080Ratregion
5079828RH1412261805136728745136729012Ratregion
5080070RH1413651865135149422135149607Ratregion
5078314RH1402692035133808099133808301Ratregion
5078314RH1402692035133794151133794353Ratregion
5072984RH1371672205135675828135676047Ratregion
5080424RH1415711895134205972134206160Ratregion
5080526RH1416301705135674235135675292Ratregion
5072970RH1371591515134508791134508941Ratregion
5073012RH1371832505133850993133851242Ratregion
5071786RH1352832095135147679135147887Ratregion
5073336RH1373771855137294543137294727Ratregion
5071374RH1350451815133979457133979637Ratregion
5071688RH1352272175135856200135856416Ratregion
5063384BF3988351605135854046135854205Ratregion
5064962BE1087731785134920467134920644Ratregion
5066760AU0481672155135240063135240277Ratregion
5066878AU0480972245136471852136472075Ratregion
5067068AU0479841295133705186133705316Ratregion
5068370AU0471871485135742250135742397Ratregion
5070490Prdx1705135543785135545366Ratregion
5065200BE1211451905136217942136218131Ratregion
5060370AW5318461725135446515135446688Ratregion
5062666BF4037241075135868620135868726Ratregion
5063684BE1079671735134992551134992723Ratregion
5063866BE1201091515134593615134593765Ratregion
5066046BI3041561875135677904135678090Ratregion
5062958BI3010141535134712918134713069Ratregion
5064566BE1081241845137369728137369911Ratregion
5063232BF4105401635136961021136961183Ratregion
5064904BF4052631345135870239135870372Ratregion
5061642BF3969601835138328230138328412Ratregion
5086247AA9570481845135659835135660018Ratregion
5086295BQ2054791905136966738136966927Ratregion
5082497BF4161251045134906081134906184Ratregion
5082497BF4161251045134383383134383486Ratregion
5088098Slc2a11925138182403138182594Ratregion
5089795AU0493682485137729455137729702Ratregion
5089795AU0493682485137518813137519060Ratregion
5087887Glyt12065136703352136703557Ratregion
5089063AU0489332005136010852136011051Ratregion
5089441AU0491581925135605701135605892Ratregion
5089549AU0492212225135822807135823785Ratregion
5083833AA8930112345133979010133979243Ratregion
5088601AU0486671975136010855136011051Ratregion
5088733AU0487472995136647817136648115Ratregion
5089697AU0493092335134827750134827982Ratregion
5089697AU0493092335134305054134305286Ratregion
5084038AA9434401925136694516136694707Ratregion
5084426AI1695731005136881212136881311Ratregion
5085044AI2376341385133617856133617991Ratregion
5081018RH1419171805136703446136703625Ratregion
5085896AW5358801615133840204133840364Ratregion
5080788RH1417822045135555690135555893Ratregion
5080824RH1418041805136028064136028243Ratregion
5082959BF3904891705134598907134599076Ratregion
5081250RH1420521935134882765134882957Ratregion
5081250RH1420521935134360069134360261Ratregion
5084856AI2359971135134983948134984060Ratregion
5084942AA9633881545137260310137260463Ratregion
5083313BF4176501155135818101135818215Ratregion
5081537BE1172641815133870317133870497Ratregion
5503256UniSTS:23755610885136036529136037616Ratregion
5505042Mpl8625137279787137280648Ratregion
5505438Lepre13985138293811138294208Ratregion
5505686UniSTS:4893139545137775801137776754Ratregion
5505686UniSTS:4893139545137564607137565560Ratregion
5505921UniSTS:496549945137261455137262459Ratregion
5506177UniSTS:498727675137307117137307183Ratregion
5507013fj50d02.y12385137040436137040773Ratregion
5507059UniSTS:2242831045136718425136718528Ratregion
5507169UniSTS:2249081775137038111137038287Ratregion
5499675MARC_7377-7378:992008389:13855135012219135012603Ratregion
5500599RH1361501995135447589135448558Ratregion
5501816MARC_13905-13906:1007570719:16495135861859135862507Ratregion
5505812UniSTS:49540514285136988593136990020Ratregion
5502172MARC_7381-7382:996687840:1985134857247134858489Ratregion
5502172MARC_7381-7382:996687840:1985134334552134335794Ratregion
5502174MARC_7369-7370:996687826:16505136711134136711783Ratregion
5501980MARC_21798-21799:1025034200:11015135656727135657042Ratregion
5501998MARC_23422-23423:1025023955:36175135976757135977373Ratregion
Position Markers

Flank 1: (D5Rat108)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25128,033,842 - 128,034,027 (+)MAPPER
Rnor_6.05133,313,668 - 133,313,852NCBI
Rnor_5.05137,107,818 - 137,108,002UniSTS
RGSC_v3.45134,871,897 - 134,872,385RGD
RGSC_v3.45134,871,902 - 134,872,086UniSTS
RGSC_v3.15134,877,128 - 134,877,312RGD
Celera5126,688,474 - 126,688,658UniSTS
RH 3.4 Map5828.8UniSTS
RH 3.4 Map5828.8RGD
RH 2.0 Map5776.9RGD
SHRSP x BN Map566.0999RGD
Cytogenetic Map5q35UniSTS
Flank 2: (D5Rat31)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25133,011,384 - 133,011,550 (+)MAPPER
Rnor_6.05138,454,074 - 138,454,239NCBI
Rnor_5.05142,265,201 - 142,265,366UniSTS
RGSC_v3.45139,996,029 - 139,996,194UniSTS
RGSC_v3.45139,996,028 - 139,996,194RGD
RGSC_v3.15140,001,255 - 140,001,420RGD
Celera5131,535,894 - 131,536,059UniSTS
RH 3.4 Map5868.1RGD
RH 3.4 Map5868.1UniSTS
RH 2.0 Map5860.3RGD
SHRSP x BN Map570.6499RGD
FHH x ACI Map570.92RGD
Cytogenetic Map5q36UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51136640934Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531926122136640934Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535788756147487820Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540777918154732375Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)544404276134502294Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)547745646167946134Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)551418671147487820Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)556991667137729065Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)560072951133313852Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)561086525149030144Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)561612600168109659Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)571552569157225114Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)584963058173504662Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589502294134502294Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)591585539136585539Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)591585539136585539Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)591585539136585539Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)591884213136884213Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)593037304133313852Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)593037304133313852Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)593273130138273130Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)597921932149030144Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5100723739153577831Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5101265591141912026Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5102945579154732228Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5107119214152119214Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111278451156278451Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112279412157279412Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112279412157279412Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112279412157279412Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112279412157279412Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112279412157279412Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114140832159140832Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114140832159140832Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116767924161767924Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116767924161767924Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116767924161767924Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116767924161767924Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5123852489133313852Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125455818149568944Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125455818157225114Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5128687766173687766Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5129038716139099229Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5130531300145726262Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5131077716173707219Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132551937173707219Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133313668138454239Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133351969140120264Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133943857173707219Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133943857173707219Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5134197905173707219Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134502121149030144Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5134502140157212422Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5134712342173707219Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5134712342173707219Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5136354114173707219Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136640731173707219Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5138154677172402610Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_disease chromosome 5 QTL region from Lewis rat associated with increased renal production of 20-hydroxyeicosatetraenoic acid (20-HETE), improved pressure-natriuresis, reduced development of salt-induced hypertension 1578407
qtl_map QTL flanking region defined by comparative mapping of congenic strains; p-values reported to be less than 0.05 for renal production of 20-HETE, renal CYP4A protein level, mean arterial pressure, renal perfusion pressure 1578407