Slc25a51 (solute carrier family 25, member 51) - Rat Genome Database

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Gene: Slc25a51 (solute carrier family 25, member 51) Rattus norvegicus
Analyze
Symbol: Slc25a51 (Ensembl: Slc25a51l1)
Name: solute carrier family 25, member 51 (Ensembl:solute carrier family 25, member 51 like 1)
RGD ID: 1305190
Description: Predicted to enable NAD transmembrane transporter activity. Predicted to be involved in aerobic electron transport chain and mitochondrial NAD transmembrane transport. Predicted to be active in mitochondrial inner membrane. Orthologous to human SLC25A51 (solute carrier family 25 member 51) and SLC25A52 (solute carrier family 25 member 52); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313241; Mcart1; mitochondrial carrier triple repeat 1; mitochondrial carrier triple repeat protein 1; mitochondrial NAD(+) transporter SLC25A51; mitochondrial nicotinamide adenine dinucleotide transporter SLC25A51; solute carrier family 25 member 51
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,445,610 - 64,459,172 (-)NCBIGRCr8
mRatBN7.2559,649,980 - 59,663,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,649,744 - 59,663,581 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx561,624,322 - 61,637,675 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,443,821 - 63,457,174 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,413,025 - 63,426,378 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,942,566 - 60,956,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,944,563 - 60,955,943 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl561,120,419 - 61,130,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,427,263 - 65,464,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,956,997 - 61,968,450 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1561,957,158 - 61,968,629 (-)NCBI
Celera558,220,034 - 58,231,487 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
ciguatoxin CTX1B  (ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dibutyl phthalate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
Heptachlor epoxide  (ISO)
hydrogen peroxide  (ISO)
hydrogen sulfide  (ISO)
leflunomide  (EXP)
methylmercury chloride  (ISO)
nevirapine  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP,ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium dichromate  (EXP)
sulforaphane  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrial inner membrane  (IEA,ISO,ISS)
mitochondrion  (IBA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Slc25a51
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8564,445,610 - 64,459,172 (-)NCBIGRCr8
mRatBN7.2559,649,980 - 59,663,454 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl559,649,744 - 59,663,581 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx561,624,322 - 61,637,675 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0563,443,821 - 63,457,174 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0563,413,025 - 63,426,378 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0560,942,566 - 60,956,135 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl560,944,563 - 60,955,943 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl561,120,419 - 61,130,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0565,427,263 - 65,464,747 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4561,956,997 - 61,968,450 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1561,957,158 - 61,968,629 (-)NCBI
Celera558,220,034 - 58,231,487 (-)NCBICelera
Cytogenetic Map5q22NCBI
SLC25A51
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38937,877,575 - 37,904,127 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl937,879,400 - 37,904,353 (-)EnsemblGRCh38hg38GRCh38
GRCh37937,877,572 - 37,904,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36937,877,601 - 37,894,350 (-)NCBINCBI36Build 36hg18NCBI36
Build 34937,875,376 - 37,894,111NCBI
Celera937,810,747 - 37,837,522 (-)NCBICelera
Cytogenetic Map9p13.2-p13.1NCBI
HuRef937,829,968 - 37,856,745 (-)NCBIHuRef
CHM1_1937,879,179 - 37,905,964 (-)NCBICHM1_1
T2T-CHM13v2.0937,901,485 - 37,928,037 (-)NCBIT2T-CHM13v2.0
Slc25a51
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39445,395,923 - 45,408,922 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl445,395,923 - 45,408,766 (-)EnsemblGRCm39 Ensembl
GRCm38445,395,923 - 45,408,917 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl445,395,923 - 45,408,766 (-)EnsemblGRCm38mm10GRCm38
MGSCv37445,408,795 - 45,421,638 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36445,417,166 - 45,425,902 (-)NCBIMGSCv36mm8
Celera445,417,464 - 45,430,402 (-)NCBICelera
Cytogenetic Map4B1NCBI
cM Map423.96NCBI
Slc25a51
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541928,580,055 - 28,594,049 (+)NCBIChiLan1.0ChiLan1.0
SLC25A52
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21749,148,867 - 49,154,386 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11834,841,463 - 34,846,079 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01824,977,278 - 24,978,720 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11828,574,847 - 28,576,164 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1828,575,026 - 28,575,948 (-)Ensemblpanpan1.1panPan2
SLC25A51
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11154,154,160 - 54,175,768 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1154,161,043 - 54,161,936 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1152,584,137 - 52,601,515 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01155,266,962 - 55,284,344 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11153,765,117 - 53,782,484 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01153,794,930 - 53,812,279 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01154,491,614 - 54,508,996 (-)NCBIUU_Cfam_GSD_1.0
Slc25a51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947169,119,193 - 169,141,183 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365245,666,773 - 5,688,789 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A51
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,637,876 - 238,667,617 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,638,282 - 238,667,612 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21266,625,739 - 266,626,960 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A52
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11848,963,081 - 48,966,383 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1848,963,316 - 48,964,209 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605023,612,414 - 23,614,075 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc25a51
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248253,999,541 - 4,019,801 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc25a51
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:537
Count of miRNA genes:260
Interacting mature miRNAs:301
Transcripts:ENSRNOT00000060149
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1598868Mcs12Mammary carcinoma susceptibility QTL 120.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)55897344960051321Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat

Markers in Region
RH143079  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,644,452 - 59,644,563 (+)MAPPERmRatBN7.2
Rnor_6.0560,937,040 - 60,937,150NCBIRnor6.0
Rnor_5.0565,445,682 - 65,445,792UniSTSRnor5.0
RGSC_v3.4561,949,562 - 61,949,672UniSTSRGSC3.4
Celera558,212,607 - 58,212,717UniSTS
Cytogenetic Map5q22UniSTS
RH139225  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,644,612 - 59,644,795 (+)MAPPERmRatBN7.2
Rnor_6.0560,937,200 - 60,937,382NCBIRnor6.0
Rnor_5.0565,445,842 - 65,446,024UniSTSRnor5.0
RGSC_v3.4561,949,722 - 61,949,904UniSTSRGSC3.4
Celera558,212,767 - 58,212,949UniSTS
RH 3.4 Map5378.2UniSTS
Cytogenetic Map5q22UniSTS
RH140135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,628,956 - 59,629,162 (+)MAPPERmRatBN7.2
Rnor_6.0560,921,546 - 60,921,751NCBIRnor6.0
Rnor_5.0565,430,202 - 65,430,407UniSTSRnor5.0
RGSC_v3.4561,934,068 - 61,934,273UniSTSRGSC3.4
Celera558,197,130 - 58,197,335UniSTS
RH 3.4 Map5389.7UniSTS
Cytogenetic Map5q22UniSTS
BQ201950  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2559,643,403 - 59,643,617 (+)MAPPERmRatBN7.2
Rnor_6.0560,935,991 - 60,936,204NCBIRnor6.0
Rnor_5.0565,444,633 - 65,444,846UniSTSRnor5.0
RGSC_v3.4561,948,513 - 61,948,726UniSTSRGSC3.4
Celera558,211,558 - 58,211,771UniSTS
RH 3.4 Map5376.9UniSTS
Cytogenetic Map5q22UniSTS
AA957383  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map7488.3UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 22 81 162 100 106 68 38 68 301 141 146 70 82 38

Sequence


Ensembl Acc Id: ENSRNOT00000060149   ⟹   ENSRNOP00000056892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl559,649,744 - 59,663,581 (-)Ensembl
Rnor_6.0 Ensembl561,120,419 - 61,130,026 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000071116   ⟹   ENSRNOP00000065025
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl559,649,744 - 59,663,581 (-)Ensembl
Rnor_6.0 Ensembl560,944,563 - 60,955,943 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088375   ⟹   ENSRNOP00000075455
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl561,123,481 - 61,124,377 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119613   ⟹   ENSRNOP00000076585
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl559,649,980 - 59,661,658 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120005   ⟹   ENSRNOP00000077579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl559,649,861 - 59,662,844 (-)Ensembl
RefSeq Acc Id: NM_001024785   ⟹   NP_001019956
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,445,610 - 64,459,004 (-)NCBI
mRatBN7.2559,649,980 - 59,663,374 (-)NCBI
Rnor_6.0560,944,475 - 60,955,928 (-)NCBI
Rnor_5.0565,427,263 - 65,464,747 (-)NCBI
RGSC_v3.4561,956,997 - 61,968,450 (-)RGD
Celera558,220,034 - 58,231,487 (-)RGD
Sequence:
RefSeq Acc Id: NM_001394297   ⟹   NP_001381226
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,445,610 - 64,459,004 (-)NCBI
mRatBN7.2559,649,980 - 59,663,374 (-)NCBI
RefSeq Acc Id: XM_006238065   ⟹   XP_006238127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,445,610 - 64,459,172 (-)NCBI
mRatBN7.2559,650,227 - 59,663,454 (-)NCBI
Rnor_6.0560,942,566 - 60,956,135 (-)NCBI
Rnor_5.0565,427,263 - 65,464,747 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063287630   ⟹   XP_063143700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8564,445,610 - 64,459,172 (-)NCBI
RefSeq Acc Id: NP_001019956   ⟸   NM_001024785
- UniProtKB: Q52KK3 (UniProtKB/Swiss-Prot),   A6IJ96 (UniProtKB/TrEMBL),   A0A8I5YBE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238127   ⟸   XM_006238065
- Peptide Label: isoform X1
- UniProtKB: Q52KK3 (UniProtKB/Swiss-Prot),   A6IJ96 (UniProtKB/TrEMBL),   A0A8I5YBE2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000065025   ⟸   ENSRNOT00000071116
Ensembl Acc Id: ENSRNOP00000076585   ⟸   ENSRNOT00000119613
Ensembl Acc Id: ENSRNOP00000056892   ⟸   ENSRNOT00000060149
Ensembl Acc Id: ENSRNOP00000077579   ⟸   ENSRNOT00000120005
Ensembl Acc Id: ENSRNOP00000075455   ⟸   ENSRNOT00000088375
RefSeq Acc Id: NP_001381226   ⟸   NM_001394297
- UniProtKB: Q52KK3 (UniProtKB/Swiss-Prot),   A6IJ96 (UniProtKB/TrEMBL),   A0A8I5YBE2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143700   ⟸   XM_063287630
- Peptide Label: isoform X1
- UniProtKB: Q52KK3 (UniProtKB/Swiss-Prot),   A6IJ96 (UniProtKB/TrEMBL),   A0A8I5YBE2 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q52KK3-F1-model_v2 AlphaFold Q52KK3 1-298 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693704
Promoter ID:EPDNEW_R4228
Type:initiation region
Name:Mcart1_1
Description:mitochondrial carrier triple repeat 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0560,955,948 - 60,956,008EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305190 AgrOrtholog
BioCyc Gene G2FUF-41441 BioCyc
Ensembl Genes ENSRNOG00000039278 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00000050061 Ensembl
  ENSRNOG00055020143 UniProtKB/Swiss-Prot
  ENSRNOG00060005583 UniProtKB/Swiss-Prot
  ENSRNOG00065010278 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000060149.5 UniProtKB/Swiss-Prot
  ENSRNOT00000071116.3 UniProtKB/Swiss-Prot
  ENSRNOT00000119613.1 UniProtKB/TrEMBL
  ENSRNOT00000120005.1 UniProtKB/Swiss-Prot
  ENSRNOT00055034389 UniProtKB/Swiss-Prot
  ENSRNOT00055034393 UniProtKB/Swiss-Prot
  ENSRNOT00055034398 UniProtKB/Swiss-Prot
  ENSRNOT00055034403 UniProtKB/Swiss-Prot
  ENSRNOT00060009272 UniProtKB/Swiss-Prot
  ENSRNOT00060009305 UniProtKB/Swiss-Prot
  ENSRNOT00060009311 UniProtKB/Swiss-Prot
  ENSRNOT00060009313 UniProtKB/Swiss-Prot
  ENSRNOT00065016592 UniProtKB/Swiss-Prot
  ENSRNOT00065016605 UniProtKB/Swiss-Prot
  ENSRNOT00065016611 UniProtKB/Swiss-Prot
  ENSRNOT00065016612 UniProtKB/Swiss-Prot
Gene3D-CATH 1.50.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7312975 IMAGE-MGC_LOAD
  IMAGE:7318312 IMAGE-MGC_LOAD
InterPro Mito_NAD+_Carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:313241 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:105587 IMAGE-MGC_LOAD
  MGC:105623 IMAGE-MGC_LOAD
NCBI Gene 313241 ENTREZGENE
PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER SLC25A51-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SD08549P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc25a51 PhenoGen
PROSITE SOLCAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000039278 RatGTEx
  ENSRNOG00000050061 RatGTEx
  ENSRNOG00055020143 RatGTEx
  ENSRNOG00060005583 RatGTEx
  ENSRNOG00065010278 RatGTEx
Superfamily-SCOP SSF103506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5YBE2 ENTREZGENE, UniProtKB/TrEMBL
  A6IJ96 ENTREZGENE, UniProtKB/TrEMBL
  Q52KK3 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-04 Slc25a51  solute carrier family 25, member 51  Mcart1  mitochondrial carrier triple repeat 1  Name and Symbol changed 629549 APPROVED
2005-12-06 Mcart1  mitochondrial carrier triple repeat 1  Mcart1_predicted  mitochondrial carrier triple repeat 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Mcart1_predicted  mitochondrial carrier triple repeat 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED