Slc25a51 (solute carrier family 25, member 51)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Slc25a51 (solute carrier family 25, member 51) Rattus norvegicus

Analyze

Symbol:

Slc25a51 (Ensembl: Mcart1)

Name:

solute carrier family 25, member 51 (Ensembl:mitochondrial carrier triple repeat 1)

RGD ID:

1305190

Description:

Predicted to enable NAD transmembrane transporter activity. Predicted to be involved in aerobic electron transport chain and mitochondrial NAD transmembrane transport. Predicted to be located in membrane. Predicted to be active in mitochondrial inner membrane. Orthologous to human SLC25A51 (solute carrier family 25 member 51) and SLC25A52 (solute carrier family 25 member 52); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313241; Mcart1; mitochondrial carrier triple repeat 1; mitochondrial carrier triple repeat protein 1; mitochondrial NAD(+) transporter SLC25A51; mitochondrial nicotinamide adenine dinucleotide transporter SLC25A51; solute carrier family 25 member 51

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	59,650,227 - 59,663,454 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	59,649,744 - 59,663,581 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	61,624,322 - 61,637,675 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	63,443,821 - 63,457,174 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	63,413,025 - 63,426,378 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	60,942,566 - 60,956,135 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	61,120,419 - 61,130,026 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	5	60,944,563 - 60,955,943 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	65,427,263 - 65,464,747 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	61,956,997 - 61,968,450 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	61,957,158 - 61,968,629 (-)	NCBI
Celera	5	58,220,034 - 58,231,487 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4'-tetrachlorobiphenyl (ISO)

3H-1,2-dithiole-3-thione (EXP)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium dichloride (EXP)

carbamazepine (ISO)

CGP 52608 (ISO)

chloropicrin (ISO)

ciguatoxin CTX1B (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dioxygen (ISO)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

fipronil (EXP)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

Heptachlor epoxide (ISO)

hydrogen peroxide (ISO)

hydrogen sulfide (ISO)

leflunomide (EXP)

methylmercury chloride (ISO)

oxaliplatin (EXP)

paracetamol (ISO)

pentachlorophenol (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (EXP,ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propiconazole (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium dichromate (EXP)

sulforaphane (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

topotecan (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aerobic electron transport chain (ISO,ISS)

mitochondrial NAD transmembrane transport (IBA,ISO,ISS)

Cellular Component

membrane (IEA)

mitochondrial inner membrane (ISO,ISS)

mitochondrion (IBA,ISO,ISS)

Molecular Function

NAD transmembrane transporter activity (IBA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

Slc25a51
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	59,650,227 - 59,663,454 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	59,649,744 - 59,663,581 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	61,624,322 - 61,637,675 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	63,443,821 - 63,457,174 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	63,413,025 - 63,426,378 (-)	NCBI	Rnor_WKY
Rnor_6.0	5	60,942,566 - 60,956,135 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	61,120,419 - 61,130,026 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	5	60,944,563 - 60,955,943 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	65,427,263 - 65,464,747 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	61,956,997 - 61,968,450 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	61,957,158 - 61,968,629 (-)	NCBI
Celera	5	58,220,034 - 58,231,487 (-)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

SLC25A51
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	37,877,575 - 37,904,127 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	37,879,400 - 37,904,353 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	37,877,572 - 37,904,124 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	37,877,601 - 37,894,350 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	37,875,376 - 37,894,111	NCBI
Celera	9	37,810,747 - 37,837,522 (-)	NCBI		Celera
Cytogenetic Map	9	p13.2-p13.1	NCBI
HuRef	9	37,829,968 - 37,856,745 (-)	NCBI		HuRef
CHM1_1	9	37,879,179 - 37,905,964 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	37,901,485 - 37,928,037 (-)	NCBI		T2T-CHM13v2.0

SLC25A51
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	37,877,575 - 37,904,127 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	37,879,400 - 37,904,353 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	37,877,572 - 37,904,124 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	37,877,601 - 37,894,350 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	37,875,376 - 37,894,111	NCBI
Celera	9	37,810,747 - 37,837,522 (-)	NCBI		Celera
Cytogenetic Map	9	p13.2-p13.1	NCBI
HuRef	9	37,829,968 - 37,856,745 (-)	NCBI		HuRef
CHM1_1	9	37,879,179 - 37,905,964 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	37,901,485 - 37,928,037 (-)	NCBI		T2T-CHM13v2.0

Slc25a51
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	45,395,923 - 45,408,922 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	45,395,923 - 45,408,766 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	45,395,923 - 45,408,917 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	45,395,923 - 45,408,766 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	45,408,795 - 45,421,638 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	45,417,166 - 45,425,902 (-)	NCBI		MGSCv36	mm8
Celera	4	45,417,464 - 45,430,402 (-)	NCBI		Celera
Cytogenetic Map	4	B1	NCBI

Slc25a51
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955419	28,580,055 - 28,594,049 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A52
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	18	28,574,847 - 28,576,164 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	28,575,026 - 28,575,948 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	18	24,977,278 - 24,978,720 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

SLC25A51
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	54,154,160 - 54,175,768 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	54,161,043 - 54,161,936 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	52,584,137 - 52,601,515 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	55,266,962 - 55,284,344 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	11	53,765,117 - 53,782,484 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	53,794,930 - 53,812,279 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	54,491,614 - 54,508,996 (-)	NCBI		UU_Cfam_GSD_1.0

Slc25a51
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	169,119,193 - 169,141,183 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936524	5,666,773 - 5,688,789 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A51
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	238,637,876 - 238,667,617 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	238,638,282 - 238,667,612 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	266,625,739 - 266,626,960 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A52
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	48,963,081 - 48,966,383 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	48,963,316 - 48,964,209 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	23,612,414 - 23,614,075 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a51
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624825	3,999,541 - 4,019,801 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc25a51
28 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	537
Count of miRNA genes:	260
Interacting mature miRNAs:	301
Transcripts:	ENSRNOT00000060149
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
1598868	Mcs12	Mammary carcinoma susceptibility QTL 12		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	58973449	60051321	Rat

Markers in Region

RH143079

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	59,644,452 - 59,644,563 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	60,937,040 - 60,937,150	NCBI	Rnor6.0
Rnor_5.0	5	65,445,682 - 65,445,792	UniSTS	Rnor5.0
RGSC_v3.4	5	61,949,562 - 61,949,672	UniSTS	RGSC3.4
Celera	5	58,212,607 - 58,212,717	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH139225

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	59,644,612 - 59,644,795 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	60,937,200 - 60,937,382	NCBI	Rnor6.0
Rnor_5.0	5	65,445,842 - 65,446,024	UniSTS	Rnor5.0
RGSC_v3.4	5	61,949,722 - 61,949,904	UniSTS	RGSC3.4
Celera	5	58,212,767 - 58,212,949	UniSTS
RH 3.4 Map	5	378.2	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH140135

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	59,628,956 - 59,629,162 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	60,921,546 - 60,921,751	NCBI	Rnor6.0
Rnor_5.0	5	65,430,202 - 65,430,407	UniSTS	Rnor5.0
RGSC_v3.4	5	61,934,068 - 61,934,273	UniSTS	RGSC3.4
Celera	5	58,197,130 - 58,197,335	UniSTS
RH 3.4 Map	5	389.7	UniSTS
Cytogenetic Map	5	q22	UniSTS

BQ201950

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	59,643,403 - 59,643,617 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	60,935,991 - 60,936,204	NCBI	Rnor6.0
Rnor_5.0	5	65,444,633 - 65,444,846	UniSTS	Rnor5.0
RGSC_v3.4	5	61,948,513 - 61,948,726	UniSTS	RGSC3.4
Celera	5	58,211,558 - 58,211,771	UniSTS
RH 3.4 Map	5	376.9	UniSTS
Cytogenetic Map	5	q22	UniSTS

AA957383

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	7	488.3	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	34	39	23	19	23	5	7	74	35	34	11	5
Low	2	10	35	19	19	19	4	7	23	11	18	11	4
Below cutoff	1	37	26	26		26	7	8	49	24	30		7

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001394297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC136163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000060149 ⟹ ENSRNOP00000056892

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	59,649,744 - 59,663,581 (-)	Ensembl
Rnor_6.0 Ensembl	5	61,120,419 - 61,130,026 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000071116 ⟹ ENSRNOP00000065025

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	59,649,744 - 59,663,581 (-)	Ensembl
Rnor_6.0 Ensembl	5	60,944,563 - 60,955,943 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000088375 ⟹ ENSRNOP00000075455

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	5	61,123,481 - 61,124,377 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119613 ⟹ ENSRNOP00000076585

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	59,649,980 - 59,661,658 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000120005 ⟹ ENSRNOP00000077579

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	59,649,861 - 59,662,844 (-)	Ensembl

RefSeq Acc Id:

NM_001024785 ⟹ NP_001019956

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	59,651,889 - 59,663,342 (-)	NCBI
Rnor_6.0	5	60,944,475 - 60,955,928 (-)	NCBI
Rnor_5.0	5	65,427,263 - 65,464,747 (-)	NCBI
RGSC_v3.4	5	61,956,997 - 61,968,450 (-)	RGD
Celera	5	58,220,034 - 58,231,487 (-)	RGD

Sequence:

show sequence

CTGCGGGCGGGCGCCGGGGGCCATGGGAAATGCACTTATCAAAATTGACTTCAGAAGAGAGAAG
GCTAACGATGGAAAACACTGGGAAAGTGACCAGAAAGCTGTCCTCGGTGCCAGGCCCAGTTGAT
GTCACAGGCTAAGTCTTCCCCAGAGAGGAGCGGCTGGAAGCACCATGATGGGCTCAGAAGCTCA
TGACAAGAGGCCTCCGATGTTGACCTCATCAAACCAGGACTTGTCACCTCACCTCGCGGACGTG
GGGCAAATAAAGCATTACTTCTGTGGCTGCTGCGCCGCTTTCAACAACGTGGCCATCACTTACC
CTGTTCAGAAGATCCTCTTCCGGCAGCAGCTGTACGGCATCAAAACCCGGGACGCCATCCTGCA
GTTGAGGAAGGATGGGTTCCGCAACTTGTACCGGGGAATCCTCCCCCCACTGATGCAGAAGACG
ACCACGCTGGCGCTTATGTTTGGTCTGTATGAGGACCTGTCGCGCCTGCTCCGCAAGCACGTGA
GCAACGCTCCTGAGTTTGCCACCCGAAGTGTGGCAGCACTGCTTGCCGGGACAACAGAAGCCAT
TCTCACTCCATTGGAAAGGGTTCAGACTTTGCTTCAGGACCACAAGCATCATGATAAGTTCACA
AACACTTACCAGGCCTTCCGGGCGCTCAGATGCCATGGGGTTGCAGAGTATTACCGAGGCTTGG
TGCCCATCCTTTTCCGAAATGGATTCAGCAATATCCTTTTCTTTGGCCTTCGTGGGCCCATTAA
GGAGCATCTGCCTACTGCCACTACAAATAGTGAACATCTGGTCAACGACTTCATCTGTGGAGGT
GTGCTCGGAGCCATGCTGGGCTTCTTAAGCTTCCCCGTTAATGTTGTAAAAGCTCGAATACAGT
CTCAGATTGGTGGGCCGTTCCAGTCTCTCCCCATGGTTTTCAAGACAATCTGGATAGAACGGGA
CAGGAAACTGATCAATCTTTTCAGAGGTGCACATCTGAATTACCACCGCTCGCTCATCTCCTGG
GGAATAATCAATGCAACTTATGAGTTTTTGTTAAAGATTGTGTGATAATGTCACTACCTGAGAT
GTTATTCTCAATTGAGTAGACCTAAGGAAAATGCAATTTAGCTTTGTTCCTAATTGGCTTAAAT
AAGGTGGTGTCATTAAGATCAAGCCCTAATTACGGACAAAGCCTTGACAAACAGTGCAGATTTC
AGTGGGCAGGGGTCAGGGTTAGGGTTTGGTCATTTCTCCAGAGCCTCAGGTTGTTGCCTGGGAA
CCAGCCTGTACCTGATGGCCTTTCAGGGCAGCTGTCACCGGGATAGATCTCATCCTCCCGGAAG
GGTTGCTAGGCCTTCTGTGTGGAAACTGTGGCGTCAGCAGCCAGAGCACATGCTCCTGGCCCAG
GGCTTCTCAGGCTCACTCTCACCTCATGTATTTTGTCTCTGCTCGTAGGAGAGTCATCGTCATT
AAACCCGAGCTCTGCATGGAGGACTGGAGCAGAGGTGGCGCTCAGTGCCATGGCTGTGGCTCCA
TGATGAATTGTTGGGGTTAGCTTTGAAATGACGTGCTGTTAAGATAGCCATTCTCCAAACTATT
TCTGTTCAGTTTTGATAGAATTAAGCAGCTAGTGAAAGCTTCCATTTTACTGTTTAGCTTTGAA
CATTTTCTGTTTAATTCTGAATATGACTTTAAGCCCTTCCAGAATGTCCTTGTGCTGTTTTTAC
TGAATTCATTGCCAAAAGATCGGGTGCCCTAGTTAACACATTGTGTGCTTCACCACTGTAAGCG
GTTCACTGCAAGCTCTACTGTTCTGCTTGACTTGTTTGTGCTACTGGTGTGGACACAGCCGACC
AGTGGGGACACTGTCCCTTGTGAGTAGTAACTGTCATGTCTGTCCTGTTCTCTGGTACTAGACT
TTAAAAAATAAACACTTCCATATAGTTTTACTTTGGGAGTCTTAATATAGTCCCAGGTCTTTTT
TTCTGGTTTCTCAGTGTTGCAGAGTAAGGTAAGGAGCAGAGGCTGCTTCCCCTCCATCCGGCCC
CCTCTGTCTCTGAAAAGAAAGATGTCAGGGTTCTGACACTCTAGGAGCCCGGTTACCACTGTGC
CACTTAAGAGTGTCTGCTCTAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA
GCACAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
AGG

hide sequence

RefSeq Acc Id:

XM_006238064 ⟹ XP_006238126

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	59,650,227 - 59,663,454 (-)	NCBI
Rnor_6.0	5	60,942,566 - 60,954,158 (-)	NCBI
Rnor_5.0	5	65,427,263 - 65,464,747 (-)	NCBI

Sequence:

show sequence

GGACAGCCAAGGCTACACAGAGAAACCCTGTCTCAAAAAAAAAGGAAATGCACTTATCAAAATT
GACTTCAGAAGAGAGAAGGCTAACGATGGAAAACACTGGGAAAGTGACCAGAAAGCTGTCCTCG
GTGCCAGGCCCAGTTGATGTCACAGGCTAAGTCTTCCCCAGAGAGGAGCGGCTGGAAGCACCAT
GATGGGCTCAGAAGCTCATGACAAGAGGCCTCCGATGTTGACCTCATCAAACCAGGACTTGTCA
CCTCACCTCGCGGACGTGGGGCAAATAAAGCATTACTTCTGTGGCTGCTGCGCCGCTTTCAACA
ACGTGGCCATCACTTACCCTGTTCAGAAGATCCTCTTCCGGCAGCAGCTGTACGGCATCAAAAC
CCGGGACGCCATCCTGCAGTTGAGGAAGGATGGGTTCCGCAACTTGTACCGGGGAATCCTCCCC
CCACTGATGCAGAAGACGACCACGCTGGCGCTTATGTTTGGTCTGTATGAGGACCTGTCGCGCC
TGCTCCGCAAGCACGTGAGCAACGCTCCTGAGTTTGCCACCCGAAGTGTGGCAGCACTGCTTGC
CGGGACAACAGAAGCCATTCTCACTCCATTGGAAAGGGTTCAGACTTTGCTTCAGGACCACAAG
CATCATGATAAGTTCACAAACACTTACCAGGCCTTCCGGGCGCTCAGATGCCATGGGGTTGCAG
AGTATTACCGAGGCTTGGTGCCCATCCTTTTCCGAAATGGATTCAGCAATATCCTTTTCTTTGG
CCTTCGTGGGCCCATTAAGGAGCATCTGCCTACTGCCACTACAAATAGTGAACATCTGGTCAAC
GACTTCATCTGTGGAGGTGTGCTCGGAGCCATGCTGGGCTTCTTAAGCTTCCCCGTTAATGTTG
TAAAAGCTCGAATACAGTCTCAGATTGGTGGGCCGTTCCAGTCTCTCCCCATGGTTTTCAAGAC
AATCTGGATAGAACGGGACAGGAAACTGATCAATCTTTTCAGAGGTGCACATCTGAATTACCAC
CGCTCGCTCATCTCCTGGGGAATAATCAATGCAACTTATGAGTTTTTGTTAAAGATTGTGTGAT
AATGTCACTACCTGAGATGTTATTCTCAATTGAGTAGACCTAAGGAAAATGCAATTTAGCTTTG
TTCCTAATTGGCTTAAATAAGGTGGTGTCATTAAGATCAAGCCCTAATTACGGACAAAGCCTTG
ACAAACAGTGCAGATTTCAGTGGGCAGGGGTCAGGGTTAGGGTTTGGTCATTTCTCCAGAGCCT
CAGGTTGTTGCCTGGGAACCAGCCTGTACCTGATGGCCTTTCAGGGCAGCTGTCACCGGGATAG
ATCTCATCCTCCCGGAAGGGTTGCTAGGCCTTCTGTGTGGAAACTGTGGCGTCAGCAGCCAGAG
CACATGCTCCTGGCCCAGGGCTTCTCAGGCTCACTCTCACCTCATGTATTTTGTCTCTGCTCGT
AGGAGAGTCATCGTCATTAAACCCGAGCTCTGCATGGAGGACTGGAGCAGAGGTGGCGCTCAGT
GCCATGGCTGTGGCTCCATGATGAATTGTTGGGGTTAGCTTTGAAATGACGTGCTGTTAAGATA
GCCATTCTCCAAACTATTTCTGTTCAGTTTTGATAGAATTAAGCAGCTAGTGAAAGCTTCCATT
TTACTGTTTAGCTTTGAACATTTTCTGTTTAATTCTGAATATGACTTTAAGCCCTTCCAGAATG
TCCTTGTGCTGTTTTTACTGAATTCATTGCCAAAAGATCGGGTGCCCTAGTTAACACATTGTGT
GCTTCACCACTGTAAGCGGTTCACTGCAAGCTCTACTGTTCTGCTTGACTTGTTTGTGCTACTG
GTGTGGACACAGCCGACCAGTGGGGACACTGTCCCTTGTGAGTAGTAACTGTCATGTCTGTCCT
GTTCTCTGGTACTAGACTTTAAAAAATAAACACTTCCATATAGTTTTACTTTGGGAGTCTTAAT
ATAGTCCCAGGTCTTTTTTTCTGGTTTCTCAGTGTTGCAGAGTAAGGTAAGGAGCAGAGGCTGC
TTCCCCTCCATCCGGCCCCCTCTGTCTCTGAAAAGAAAGATGTCAGGGTTCTGACACTCTAGGA
GCCCGGTTACCACTGTGCCACTTAAGAGTGTCTGCTCTAGGGGTTGGGGATTTAGCTCAGTGGT
AGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAGAAAAAA
GAAAAAAAAAAAAAAAAGAGTGTCTGTTCTAAGTAACAGCACTGACTTCTGGGGCTCACTCAGG
TAGGACTCAACTAGCAGGAACCAGGCCAAGGAGCCACAGTTATTTTCTGAGTAAATATTGTGAA
AGACTAACAATTCAACTGAAATAACATGTCTGGAGAAGTAGCTTAGAATCTTAAAGAGGCTGTC
TGTAAACACCACAGGTAAACTTGTTTCCCAGGATTTGACACAAGAAAGTCAGTTTCTTTGTTTT
TTTTAATGGTGCTAGGGATTGAACCCAGGGCCTTGCACATCCTAGGCACTTGCTGTCCCGCTGA
GCTACACTCCAGCCTCCCCAGTTTTTGTTTTACTTGATTTTATTTTGAGACCGGTTCTCAACAT
TCTGCCTTCTGAGTGCTGGGATTAAAGGCATCCCCAGTCCTTAAGGATAAGTTTCTTACTAACA
GTTTTTCATCTTGAGGTAATTGCATACAAATGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTATGTGTGTGTATGTATATGTGTGTACATGTGCGTGCACCTTCAGGCTGAAA
CCAGACCCTTAACTGGAGTTTCTGGGGAAGGTAATCCAAAACAGCTCTTTACCTCTAACTCCAC
TAAAGCTGGTTAAAGGAAGCTAACATCGCCCGGCTGTAAGGGTTGGGAGCCCAGTAAGTATTGG
GGTGGCAGAAACGGAGGTCAGTGGTTTTGGAGCAACACTGATGGAAGAGTTGGTGCGGTATGGT
GTGGTGCAGACATTAAGGGGCAAATGTGAGGACTCAGCAGACAAGCATTTGACGGAGATCCATC
TGAGTAGTACTGTGTCTCAGTTATGGTTGGTGAGAACTCTCACTAATGAGATAGCGCCTCGGTT
CCTGACCCCCGTGTCCGCGTGCAGTATTGTGCACCCATGGCCTGTCCAAGTGCAGCACAGGGGG
AGGAGGGGTGAGTTAATCAGGGACTACACTTGCTTGGCCCTGAGTGTCATTGGCCTTCAGAGAG
AGGAAGAGGCCTTGTTCTCTTACACTCCATGCAGGTGGTTGTGTTAGTTGTAAAGCACTCTGTG
ACGTGCATTTAAGGGTAGTGCTTTTGCTTTGCTGTCCTAATTATGTGGCGTTCCTAATGCTTTT
TAACTTTTAAACACTTTGTCACCCTTAGAGTTCTTGAAGACAAGATTGCAGTGTATTACAGAGG
TGGCTTTGTCTCTGATAACTTTGACAAAATTCAGAACTTGTGACCCACTTTGAACTTTTATGTC
AGACTGTAATTAATAGAGTCTTAACTAGTACAGTGATATTTTTTAAAGGCAAAAAGACTAAAGA
ACTCTCCGAAAAGCTTTAAAGTGGCCTTTGTGTTACATGCGTGGCATGGGTGGCTCATGAGTGC
AGGACACGAGTGATCCGTGTGTCCTATCTGATGTCACCAGGAACCTACGAGTTTTGCATTTAAC
ACATGTCAGTGCCGTGAACCCTCAGGACTGCAGCAGAGTCAACACAGCCTCTGCATTGTGGCAA
ATTGGTGTTCGGCTTCTTTTGTGGTTAGAGACAGATGTGTGTGCCTATCAGCATTTATCTCGTG
GTTGGTCTTATAATCACTTGCTATATATTGTGACCCTGTGCAATAAAGCAGAATTGTACATACA
TAGTTCTATTTGGGTACCTGAAATTCCTAAGCTCAATTACAATGTAGATAAACTTGTAAGGTTT
AGAGGACTGGCCTGTCGCGTAAGTGGTTAACAGAGAATGAACCCTGGTTCCGGGGTGGTATGAG
CCGAGTTGGTGCGGTCACAGCTGAATCAGACTATTAGCAGTAAGGCATTCATACTTGGATTCCC
TATGTCAAATGTATTTTTTTCTCATATACAAATAAATGCATATCAAAAACGAA

hide sequence

RefSeq Acc Id:

XM_006238065 ⟹ XP_006238127

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	59,650,227 - 59,663,454 (-)	NCBI
Rnor_6.0	5	60,942,566 - 60,956,135 (-)	NCBI
Rnor_5.0	5	65,427,263 - 65,464,747 (-)	NCBI

Sequence:

show sequence

GGGGGGACCAGCGGCACCCTTAGAGCATGGCAAAAGGTGTGACAAGAGTCACTAGCAGATCCGA
CGCTGTACAGGGAAGCCACAACGATACCCACACCCAGAGCAGGGCGGTGCCCTGTTCACGTGAT
CCGACAACGCCCCGCCCCGGCCCTGCTTGGGTCGAACCTGTCTGCGCTTGCGCGGGCGCGGGCT
CGCTCGCCGGCCGTCCTGCGGGCGGGCGCCGGGGGCCATGGGAAATGCACTTATCAAAATTGAC
TTCAGAAGAGAGAAGGCTAACGATGGAAAACACTGGGAAAGTGACCAGAAAGCTGTCCTCGGTG
CCAGGCCCAGTTGATGTCACAGGTAAAGTCTTCTAAACTTAAAGGAACAGGCTAAGTCTTCCCC
AGAGAGGAGCGGCTGGAAGCACCATGATGGGCTCAGAAGCTCATGACAAGAGGCCTCCGATGTT
GACCTCATCAAACCAGGACTTGTCACCTCACCTCGCGGACGTGGGGCAAATAAAGCATTACTTC
TGTGGCTGCTGCGCCGCTTTCAACAACGTGGCCATCACTTACCCTGTTCAGAAGATCCTCTTCC
GGCAGCAGCTGTACGGCATCAAAACCCGGGACGCCATCCTGCAGTTGAGGAAGGATGGGTTCCG
CAACTTGTACCGGGGAATCCTCCCCCCACTGATGCAGAAGACGACCACGCTGGCGCTTATGTTT
GGTCTGTATGAGGACCTGTCGCGCCTGCTCCGCAAGCACGTGAGCAACGCTCCTGAGTTTGCCA
CCCGAAGTGTGGCAGCACTGCTTGCCGGGACAACAGAAGCCATTCTCACTCCATTGGAAAGGGT
TCAGACTTTGCTTCAGGACCACAAGCATCATGATAAGTTCACAAACACTTACCAGGCCTTCCGG
GCGCTCAGATGCCATGGGGTTGCAGAGTATTACCGAGGCTTGGTGCCCATCCTTTTCCGAAATG
GATTCAGCAATATCCTTTTCTTTGGCCTTCGTGGGCCCATTAAGGAGCATCTGCCTACTGCCAC
TACAAATAGTGAACATCTGGTCAACGACTTCATCTGTGGAGGTGTGCTCGGAGCCATGCTGGGC
TTCTTAAGCTTCCCCGTTAATGTTGTAAAAGCTCGAATACAGTCTCAGATTGGTGGGCCGTTCC
AGTCTCTCCCCATGGTTTTCAAGACAATCTGGATAGAACGGGACAGGAAACTGATCAATCTTTT
CAGAGGTGCACATCTGAATTACCACCGCTCGCTCATCTCCTGGGGAATAATCAATGCAACTTAT
GAGTTTTTGTTAAAGATTGTGTGATAATGTCACTACCTGAGATGTTATTCTCAATTGAGTAGAC
CTAAGGAAAATGCAATTTAGCTTTGTTCCTAATTGGCTTAAATAAGGTGGTGTCATTAAGATCA
AGCCCTAATTACGGACAAAGCCTTGACAAACAGTGCAGATTTCAGTGGGCAGGGGTCAGGGTTA
GGGTTTGGTCATTTCTCCAGAGCCTCAGGTTGTTGCCTGGGAACCAGCCTGTACCTGATGGCCT
TTCAGGGCAGCTGTCACCGGGATAGATCTCATCCTCCCGGAAGGGTTGCTAGGCCTTCTGTGTG
GAAACTGTGGCGTCAGCAGCCAGAGCACATGCTCCTGGCCCAGGGCTTCTCAGGCTCACTCTCA
CCTCATGTATTTTGTCTCTGCTCGTAGGAGAGTCATCGTCATTAAACCCGAGCTCTGCATGGAG
GACTGGAGCAGAGGTGGCGCTCAGTGCCATGGCTGTGGCTCCATGATGAATTGTTGGGGTTAGC
TTTGAAATGACGTGCTGTTAAGATAGCCATTCTCCAAACTATTTCTGTTCAGTTTTGATAGAAT
TAAGCAGCTAGTGAAAGCTTCCATTTTACTGTTTAGCTTTGAACATTTTCTGTTTAATTCTGAA
TATGACTTTAAGCCCTTCCAGAATGTCCTTGTGCTGTTTTTACTGAATTCATTGCCAAAAGATC
GGGTGCCCTAGTTAACACATTGTGTGCTTCACCACTGTAAGCGGTTCACTGCAAGCTCTACTGT
TCTGCTTGACTTGTTTGTGCTACTGGTGTGGACACAGCCGACCAGTGGGGACACTGTCCCTTGT
GAGTAGTAACTGTCATGTCTGTCCTGTTCTCTGGTACTAGACTTTAAAAAATAAACACTTCCAT
ATAGTTTTACTTTGGGAGTCTTAATATAGTCCCAGGTCTTTTTTTCTGGTTTCTCAGTGTTGCA
GAGTAAGGTAAGGAGCAGAGGCTGCTTCCCCTCCATCCGGCCCCCTCTGTCTCTGAAAAGAAAG
ATGTCAGGGTTCTGACACTCTAGGAGCCCGGTTACCACTGTGCCACTTAAGAGTGTCTGCTCTA
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCAGT
CCCCAGCTCCGAAAAAAAGAAAAAAGAAAAAAAAAAAAAAAAGAGTGTCTGTTCTAAGTAACAG
CACTGACTTCTGGGGCTCACTCAGGTAGGACTCAACTAGCAGGAACCAGGCCAAGGAGCCACAG
TTATTTTCTGAGTAAATATTGTGAAAGACTAACAATTCAACTGAAATAACATGTCTGGAGAAGT
AGCTTAGAATCTTAAAGAGGCTGTCTGTAAACACCACAGGTAAACTTGTTTCCCAGGATTTGAC
ACAAGAAAGTCAGTTTCTTTGTTTTTTTTAATGGTGCTAGGGATTGAACCCAGGGCCTTGCACA
TCCTAGGCACTTGCTGTCCCGCTGAGCTACACTCCAGCCTCCCCAGTTTTTGTTTTACTTGATT
TTATTTTGAGACCGGTTCTCAACATTCTGCCTTCTGAGTGCTGGGATTAAAGGCATCCCCAGTC
CTTAAGGATAAGTTTCTTACTAACAGTTTTTCATCTTGAGGTAATTGCATACAAATGTGTGTGT
GTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTATATGTGTGTAC
ATGTGCGTGCACCTTCAGGCTGAAACCAGACCCTTAACTGGAGTTTCTGGGGAAGGTAATCCAA
AACAGCTCTTTACCTCTAACTCCACTAAAGCTGGTTAAAGGAAGCTAACATCGCCCGGCTGTAA
GGGTTGGGAGCCCAGTAAGTATTGGGGTGGCAGAAACGGAGGTCAGTGGTTTTGGAGCAACACT
GATGGAAGAGTTGGTGCGGTATGGTGTGGTGCAGACATTAAGGGGCAAATGTGAGGACTCAGCA
GACAAGCATTTGACGGAGATCCATCTGAGTAGTACTGTGTCTCAGTTATGGTTGGTGAGAACTC
TCACTAATGAGATAGCGCCTCGGTTCCTGACCCCCGTGTCCGCGTGCAGTATTGTGCACCCATG
GCCTGTCCAAGTGCAGCACAGGGGGAGGAGGGGTGAGTTAATCAGGGACTACACTTGCTTGGCC
CTGAGTGTCATTGGCCTTCAGAGAGAGGAAGAGGCCTTGTTCTCTTACACTCCATGCAGGTGGT
TGTGTTAGTTGTAAAGCACTCTGTGACGTGCATTTAAGGGTAGTGCTTTTGCTTTGCTGTCCTA
ATTATGTGGCGTTCCTAATGCTTTTTAACTTTTAAACACTTTGTCACCCTTAGAGTTCTTGAAG
ACAAGATTGCAGTGTATTACAGAGGTGGCTTTGTCTCTGATAACTTTGACAAAATTCAGAACTT
GTGACCCACTTTGAACTTTTATGTCAGACTGTAATTAATAGAGTCTTAACTAGTACAGTGATAT
TTTTTAAAGGCAAAAAGACTAAAGAACTCTCCGAAAAGCTTTAAAGTGGCCTTTGTGTTACATG
CGTGGCATGGGTGGCTCATGAGTGCAGGACACGAGTGATCCGTGTGTCCTATCTGATGTCACCA
GGAACCTACGAGTTTTGCATTTAACACATGTCAGTGCCGTGAACCCTCAGGACTGCAGCAGAGT
CAACACAGCCTCTGCATTGTGGCAAATTGGTGTTCGGCTTCTTTTGTGGTTAGAGACAGATGTG
TGTGCCTATCAGCATTTATCTCGTGGTTGGTCTTATAATCACTTGCTATATATTGTGACCCTGT
GCAATAAAGCAGAATTGTACATACATAGTTCTATTTGGGTACCTGAAATTCCTAAGCTCAATTA
CAATGTAGATAAACTTGTAAGGTTTAGAGGACTGGCCTGTCGCGTAAGTGGTTAACAGAGAATG
AACCCTGGTTCCGGGGTGGTATGAGCCGAGTTGGTGCGGTCACAGCTGAATCAGACTATTAGCA
GTAAGGCATTCATACTTGGATTCCCTATGTCAAATGTATTTTTTTCTCATATACAAATAAATGC
ATATCAAAAACGAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001019956	(Get FASTA)	NCBI Sequence Viewer
	NP_001381226	(Get FASTA)	NCBI Sequence Viewer
	XP_006238126	(Get FASTA)	NCBI Sequence Viewer
	XP_006238127	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH94303	(Get FASTA)	NCBI Sequence Viewer
	AAH94527	(Get FASTA)	NCBI Sequence Viewer
	EDL98815	(Get FASTA)	NCBI Sequence Viewer
	EDL98816	(Get FASTA)	NCBI Sequence Viewer
	Q52KK3	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001019956 ⟸ NM_001024785

- UniProtKB:

Q52KK3 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MMGSEAHDKRPPMLTSSNQDLSPHLADVGQIKHYFCGCCAAFNNVAITYPVQKILFRQQLYGIK
TRDAILQLRKDGFRNLYRGILPPLMQKTTTLALMFGLYEDLSRLLRKHVSNAPEFATRSVAALL
AGTTEAILTPLERVQTLLQDHKHHDKFTNTYQAFRALRCHGVAEYYRGLVPILFRNGFSNILFF
GLRGPIKEHLPTATTNSEHLVNDFICGGVLGAMLGFLSFPVNVVKARIQSQIGGPFQSLPMVFK
TIWIERDRKLINLFRGAHLNYHRSLISWGIINATYEFLLKIV

hide sequence

RefSeq Acc Id:	XP_006238127 ⟸ XM_006238065
- Peptide Label:	isoform X1
- UniProtKB:	Q52KK3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMGSEAHDKRPPMLTSSNQDLSPHLADVGQIKHYFCGCCAAFNNVAITYPVQKILFRQQLYGIK TRDAILQLRKDGFRNLYRGILPPLMQKTTTLALMFGLYEDLSRLLRKHVSNAPEFATRSVAALL AGTTEAILTPLERVQTLLQDHKHHDKFTNTYQAFRALRCHGVAEYYRGLVPILFRNGFSNILFF GLRGPIKEHLPTATTNSEHLVNDFICGGVLGAMLGFLSFPVNVVKARIQSQIGGPFQSLPMVFK TIWIERDRKLINLFRGAHLNYHRSLISWGIINATYEFLLKIV hide sequence

RefSeq Acc Id:	XP_006238126 ⟸ XM_006238064
- Peptide Label:	isoform X1
- UniProtKB:	Q52KK3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MMGSEAHDKRPPMLTSSNQDLSPHLADVGQIKHYFCGCCAAFNNVAITYPVQKILFRQQLYGIK TRDAILQLRKDGFRNLYRGILPPLMQKTTTLALMFGLYEDLSRLLRKHVSNAPEFATRSVAALL AGTTEAILTPLERVQTLLQDHKHHDKFTNTYQAFRALRCHGVAEYYRGLVPILFRNGFSNILFF GLRGPIKEHLPTATTNSEHLVNDFICGGVLGAMLGFLSFPVNVVKARIQSQIGGPFQSLPMVFK TIWIERDRKLINLFRGAHLNYHRSLISWGIINATYEFLLKIV hide sequence

RefSeq Acc Id:

ENSRNOP00000065025 ⟸ ENSRNOT00000071116

RefSeq Acc Id:

ENSRNOP00000076585 ⟸ ENSRNOT00000119613

RefSeq Acc Id:

ENSRNOP00000056892 ⟸ ENSRNOT00000060149

RefSeq Acc Id:

ENSRNOP00000077579 ⟸ ENSRNOT00000120005

RefSeq Acc Id:

ENSRNOP00000075455 ⟸ ENSRNOT00000088375

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q52KK3-F1-model_v2	AlphaFold	Q52KK3	1-298	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693704

Promoter ID:

EPDNEW_R4228

Type:

initiation region

Name:

Mcart1_1

Description:

mitochondrial carrier triple repeat 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	60,955,948 - 60,956,008	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305190	AgrOrtholog
BioCyc Gene	G2FUF-41441	BioCyc
Ensembl Genes	ENSRNOG00000039278	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00000050061	Ensembl
Ensembl Protein	ENSRNOP00000056892	ENTREZGENE
	ENSRNOP00000056892.2	UniProtKB/Swiss-Prot
	ENSRNOP00000065025	ENTREZGENE
	ENSRNOP00000065025.1	UniProtKB/Swiss-Prot
	ENSRNOP00000076585.1	UniProtKB/TrEMBL
	ENSRNOP00000077579.1	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000060149	ENTREZGENE
	ENSRNOT00000060149.5	UniProtKB/Swiss-Prot
	ENSRNOT00000071116	ENTREZGENE
	ENSRNOT00000071116.3	UniProtKB/Swiss-Prot
	ENSRNOT00000119613.1	UniProtKB/TrEMBL
	ENSRNOT00000120005.1	UniProtKB/Swiss-Prot
Gene3D-CATH	1.50.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7312975	IMAGE-MGC_LOAD
	IMAGE:7318312	IMAGE-MGC_LOAD
InterPro	Mitochondrial_sb/sol_carrier	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:313241	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105587	IMAGE-MGC_LOAD
	MGC:105623	IMAGE-MGC_LOAD
NCBI Gene	313241	ENTREZGENE
PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER SLC25A51-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SD08549P	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc25a51	PhenoGen
PROSITE	SOLCAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF103506	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5YBE2_RAT	UniProtKB/TrEMBL
	Q52KK3	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-11-04	Slc25a51	solute carrier family 25, member 51	Mcart1	mitochondrial carrier triple repeat 1	Name and Symbol changed	629549	APPROVED
2005-12-06	Mcart1	mitochondrial carrier triple repeat 1	Mcart1_predicted	mitochondrial carrier triple repeat 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Mcart1_predicted	mitochondrial carrier triple repeat 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar