Ubap2 (ubiquitin-associated protein 2) - Rat Genome Database

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Gene: Ubap2 (ubiquitin-associated protein 2) Rattus norvegicus
Analyze
Symbol: Ubap2
Name: ubiquitin-associated protein 2
RGD ID: 1311717
Description: Predicted to be located in cytoplasm. Orthologous to human UBAP2 (ubiquitin associated protein 2); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313169
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Ubap2-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,144,182 - 61,233,355 (-)NCBIGRCr8
mRatBN7.2556,348,243 - 56,437,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,348,246 - 56,437,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx558,323,465 - 58,411,883 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0560,142,471 - 60,230,664 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0560,127,044 - 60,215,557 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0557,534,056 - 57,632,337 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,534,695 - 57,632,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,064,692 - 62,156,277 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,610,412 - 58,677,693 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1558,610,589 - 58,677,879 (-)NCBI
Celera554,945,905 - 55,034,405 (-)NCBICelera
Cytogenetic Map5q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22658674   PMID:25468996  


Genomics

Comparative Map Data
Ubap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8561,144,182 - 61,233,355 (-)NCBIGRCr8
mRatBN7.2556,348,243 - 56,437,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl556,348,246 - 56,437,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx558,323,465 - 58,411,883 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0560,142,471 - 60,230,664 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0560,127,044 - 60,215,557 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0557,534,056 - 57,632,337 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,534,695 - 57,632,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0562,064,692 - 62,156,277 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,610,412 - 58,677,693 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1558,610,589 - 58,677,879 (-)NCBI
Celera554,945,905 - 55,034,405 (-)NCBICelera
Cytogenetic Map5q22NCBI
UBAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,921,693 - 34,049,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,921,693 - 34,049,388 (-)EnsemblGRCh38hg38GRCh38
GRCh37933,921,691 - 34,049,197 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,911,691 - 34,038,947 (-)NCBINCBI36Build 36hg18NCBI36
Celera933,853,492 - 33,980,727 (-)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef933,879,453 - 34,005,922 (-)NCBIHuRef
CHM1_1933,921,454 - 34,048,792 (-)NCBICHM1_1
T2T-CHM13v2.0933,940,293 - 34,067,767 (-)NCBIT2T-CHM13v2.0
Ubap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39441,194,313 - 41,276,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl441,194,313 - 41,275,144 (-)EnsemblGRCm39 Ensembl
GRCm38441,194,313 - 41,276,016 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl441,194,313 - 41,275,144 (-)EnsemblGRCm38mm10GRCm38
MGSCv37441,141,348 - 41,222,168 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36441,382,986 - 41,463,806 (-)NCBIMGSCv36mm8
Celera440,855,618 - 40,936,380 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map421.13NCBI
Ubap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,020,232 - 2,100,155 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,044,397 - 2,100,904 (+)NCBIChiLan1.0ChiLan1.0
UBAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,553,375 - 90,680,854 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1990,558,726 - 90,686,796 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0933,759,877 - 33,887,146 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1934,570,883 - 34,697,752 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl934,570,883 - 34,697,752 (-)Ensemblpanpan1.1panPan2
UBAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11150,679,601 - 50,803,455 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1150,675,525 - 50,802,940 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1149,309,029 - 49,433,088 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01151,619,935 - 51,744,896 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1151,619,939 - 51,744,367 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11150,283,528 - 50,407,971 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01150,151,044 - 50,275,919 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01150,916,196 - 51,041,038 (-)NCBIUU_Cfam_GSD_1.0
Ubap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947165,559,683 - 165,662,665 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365242,107,230 - 2,210,225 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365242,107,263 - 2,210,200 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1032,756,040 - 32,892,867 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11032,755,707 - 32,897,260 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,093,935 - 37,146,304 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11246,536,570 - 46,665,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1246,536,560 - 46,665,902 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603843,519,609 - 43,553,728 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473638,336,136 - 38,439,565 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473638,335,334 - 38,465,521 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ubap2
218 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:260
Count of miRNA genes:178
Interacting mature miRNAs:190
Transcripts:ENSRNOT00000015920
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578776Stresp18Stress response QTL 182.9thymus mass (VT:0004954)thymus wet weight (CMO:0000855)52795544072955440Rat
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)51887394774251464Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
6903292Stl28Serum triglyceride level QTL 282.60.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)52851548973515489Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1578767Stresp17Stress response QTL 174.30.01blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)52795544072955440Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)53518915368564008Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
6903306Scl35Serum cholesterol QTL 352.60.0073blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)52851548973515489Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52122674466226744Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51887394763873947Rat

Markers in Region
RH142768  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2556,358,856 - 56,358,984 (+)MAPPERmRatBN7.2
Rnor_6.0557,544,658 - 57,544,785NCBIRnor6.0
Rnor_5.0562,075,301 - 62,075,428UniSTSRnor5.0
RGSC_v3.4558,621,193 - 58,621,320UniSTSRGSC3.4
Celera554,956,514 - 54,956,641UniSTS
Cytogenetic Map5q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006238054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000080295   ⟹   ENSRNOP00000070607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl556,348,246 - 56,436,822 (-)Ensembl
Rnor_6.0 Ensembl557,534,894 - 57,607,725 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080787   ⟹   ENSRNOP00000070670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl556,348,246 - 56,437,049 (-)Ensembl
Rnor_6.0 Ensembl557,534,695 - 57,632,177 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092581   ⟹   ENSRNOP00000075769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl556,348,246 - 56,436,822 (-)Ensembl
Rnor_6.0 Ensembl557,534,866 - 57,632,182 (-)Ensembl
RefSeq Acc Id: NM_001107928   ⟹   NP_001101398
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,182 - 61,232,759 (-)NCBI
mRatBN7.2556,348,243 - 56,436,822 (-)NCBI
Rnor_6.0557,534,059 - 57,632,182 (-)NCBI
Rnor_5.0562,064,692 - 62,156,277 (-)NCBI
RGSC_v3.4558,610,412 - 58,677,693 (-)RGD
Celera554,945,905 - 55,034,405 (-)RGD
Sequence:
RefSeq Acc Id: XM_006238054   ⟹   XP_006238116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,229,178 (-)NCBI
mRatBN7.2556,348,243 - 56,414,060 (-)NCBI
Rnor_6.0557,534,056 - 57,607,758 (-)NCBI
Rnor_5.0562,064,692 - 62,156,277 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593356   ⟹   XP_017448845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,732 (-)NCBI
mRatBN7.2556,348,243 - 56,436,766 (-)NCBI
Rnor_6.0557,534,056 - 57,632,337 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109838   ⟹   XP_038965766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,816 (-)NCBI
mRatBN7.2556,348,243 - 56,436,864 (-)NCBI
RefSeq Acc Id: XM_039109842   ⟹   XP_038965770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,233,355 (-)NCBI
mRatBN7.2556,348,243 - 56,437,397 (-)NCBI
RefSeq Acc Id: XM_063287603   ⟹   XP_063143673
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,229,184 (-)NCBI
RefSeq Acc Id: XM_063287604   ⟹   XP_063143674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,229,189 (-)NCBI
RefSeq Acc Id: XM_063287605   ⟹   XP_063143675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,816 (-)NCBI
RefSeq Acc Id: XM_063287606   ⟹   XP_063143676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,233,341 (-)NCBI
RefSeq Acc Id: XM_063287607   ⟹   XP_063143677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,750 (-)NCBI
RefSeq Acc Id: XM_063287608   ⟹   XP_063143678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,750 (-)NCBI
RefSeq Acc Id: XM_063287609   ⟹   XP_063143679
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,233,355 (-)NCBI
RefSeq Acc Id: XM_063287610   ⟹   XP_063143680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,816 (-)NCBI
RefSeq Acc Id: XM_063287611   ⟹   XP_063143681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,760 (-)NCBI
RefSeq Acc Id: XM_063287612   ⟹   XP_063143682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,229,174 (-)NCBI
RefSeq Acc Id: XM_063287613   ⟹   XP_063143683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,750 (-)NCBI
RefSeq Acc Id: XM_063287614   ⟹   XP_063143684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,972 (-)NCBI
RefSeq Acc Id: XM_063287615   ⟹   XP_063143685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,750 (-)NCBI
RefSeq Acc Id: XM_063287616   ⟹   XP_063143686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8561,144,184 - 61,232,727 (-)NCBI
RefSeq Acc Id: NP_001101398   ⟸   NM_001107928
- UniProtKB: A0A0U1RRQ3 (UniProtKB/TrEMBL),   A6IIU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006238116   ⟸   XM_006238054
- Peptide Label: isoform X6
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448845   ⟸   XM_017593356
- Peptide Label: isoform X11
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070607   ⟸   ENSRNOT00000080295
Ensembl Acc Id: ENSRNOP00000070670   ⟸   ENSRNOT00000080787
Ensembl Acc Id: ENSRNOP00000075769   ⟸   ENSRNOT00000092581
RefSeq Acc Id: XP_038965770   ⟸   XM_039109842
- Peptide Label: isoform X8
- UniProtKB: A0A0U1RRQ3 (UniProtKB/TrEMBL),   A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965766   ⟸   XM_039109838
- Peptide Label: isoform X7
- UniProtKB: A0A0G2JYI7 (UniProtKB/TrEMBL),   A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143679   ⟸   XM_063287609
- Peptide Label: isoform X4
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143676   ⟸   XM_063287606
- Peptide Label: isoform X3
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143684   ⟸   XM_063287614
- Peptide Label: isoform X8
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL),   A0A0U1RRQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143680   ⟸   XM_063287610
- Peptide Label: isoform X4
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143675   ⟸   XM_063287605
- Peptide Label: isoform X3
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143681   ⟸   XM_063287611
- Peptide Label: isoform X4
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143685   ⟸   XM_063287615
- Peptide Label: isoform X9
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143683   ⟸   XM_063287613
- Peptide Label: isoform X8
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL),   A0A0U1RRQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143678   ⟸   XM_063287608
- Peptide Label: isoform X4
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143677   ⟸   XM_063287607
- Peptide Label: isoform X3
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143686   ⟸   XM_063287616
- Peptide Label: isoform X10
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143674   ⟸   XM_063287604
- Peptide Label: isoform X2
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143673   ⟸   XM_063287603
- Peptide Label: isoform X1
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143682   ⟸   XM_063287612
- Peptide Label: isoform X5
- UniProtKB: A6IIU0 (UniProtKB/TrEMBL)
Protein Domains
UBA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JYI7-F1-model_v2 AlphaFold A0A0G2JYI7 1-1135 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693647
Promoter ID:EPDNEW_R4171
Type:multiple initiation site
Name:Ubap2_1
Description:ubiquitin-associated protein 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0557,632,146 - 57,632,206EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311717 AgrOrtholog
BioCyc Gene G2FUF-41574 BioCyc
Ensembl Genes ENSRNOG00000052087 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080295.2 UniProtKB/TrEMBL
  ENSRNOT00000080787.2 UniProtKB/TrEMBL
  ENSRNOT00000092581.2 UniProtKB/TrEMBL
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
InterPro DUF3697_Uba2 UniProtKB/TrEMBL
  TC-DDR_regulator UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  UBA/transl_elong_EF1B_N_euk UniProtKB/TrEMBL
KEGG Report rno:313169 UniProtKB/TrEMBL
NCBI Gene 313169 ENTREZGENE
PANTHER UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER UniProtKB/TrEMBL
  UBIQUITIN-ASSOCIATED PROTEIN 2 UniProtKB/TrEMBL
Pfam DUF3697 UniProtKB/TrEMBL
PhenoGen Ubap2 PhenoGen
RatGTEx ENSRNOG00000052087 RatGTEx
SMART UBA UniProtKB/TrEMBL
Superfamily-SCOP UBA_like UniProtKB/TrEMBL
UniProt A0A0G2JYD1_RAT UniProtKB/TrEMBL
  A0A0G2JYI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RRQ3 ENTREZGENE, UniProtKB/TrEMBL
  A6IIU0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Ubap2  ubiquitin-associated protein 2   Ubap2_predicted  ubiquitin-associated protein 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ubap2_predicted  ubiquitin-associated protein 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED