Dnajb5 (DnaJ heat shock protein family (Hsp40) member B5)

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Gene: Dnajb5 (DnaJ heat shock protein family (Hsp40) member B5) Rattus norvegicus

Analyze

Symbol:

Dnajb5

Name:

DnaJ heat shock protein family (Hsp40) member B5

RGD ID:

1307453

Description:

Predicted to enable protein-folding chaperone binding activity and unfolded protein binding activity. Predicted to be involved in chaperone cofactor-dependent protein refolding and response to unfolded protein. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in cytosol. Orthologous to human DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

DnaJ (Hsp40) homolog, subfamily B, member 5; dnaJ homolog subfamily B member 5; heat shock cognate 40; LOC313811

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Dnajb5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Dnajb5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Dnajb5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Dnajb5 (DnaJ heat shock protein family (Hsp40) member B5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DNAJB5 (DnaJ heat shock protein family (Hsp40) member B5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Dnajb5 (DnaJ heat shock protein family (Hsp40) member B5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:122979	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	dnajb5 (DnaJ heat shock protein family (Hsp40) member B5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SIS1	Alliance	DIOPT (InParanoid\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG2887	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	dnj-13	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG5001	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	DnaJ-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	dnajb5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	57,176,840 - 57,185,492 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,176,845 - 57,185,490 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	59,150,016 - 59,158,651 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	60,968,827 - 60,977,464 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	60,954,176 - 60,962,806 (+)	NCBI	Rnor_WKY
Rnor_6.0	5	58,393,197 - 58,402,162 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,393,233 - 58,401,870 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	62,918,571 - 62,927,544 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	59,437,972 - 59,446,618 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	59,438,114 - 59,446,798 (+)	NCBI
Celera	5	55,766,263 - 55,774,913 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

anauxetic dysplasia (ISO)

distal arthrogryposis type 1A (ISO)

distal spinal muscular atrophy 2 (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis-6 (ISO)

galactosemia (ISO)

genetic disease (ISO)

Hyperphosphatasia with Mental Retardation Syndrome 2 (ISO)

myopathy (ISO)

primary ciliary dyskinesia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

15-acetyldeoxynivalenol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP,ISO)

acrylamide (EXP)

all-trans-retinoic acid (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

C60 fullerene (EXP)

cadmium dichloride (EXP)

choline (ISO)

chromium(6+) (ISO)

chrysene (ISO)

ciglitazone (EXP)

cisplatin (ISO)

cycloheximide (ISO)

dexamethasone (ISO)

dichloroacetic acid (ISO)

dimethyl sulfoxide (EXP)

doxorubicin (EXP,ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

furan (EXP)

genistein (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

indometacin (ISO)

L-methionine (ISO)

methamphetamine (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

mitomycin C (ISO)

N-methyl-N-nitrosourea (ISO)

nevirapine (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

phenylephrine (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium cyanide (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

SCH 23390 (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chaperone cofactor-dependent protein refolding (IBA)

negative regulation of transcription by RNA polymerase II (ISO)

response to unfolded protein (ISO)

Cellular Component

cytosol (IBA,ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

protein-folding chaperone binding (IBA,ISO)

unfolded protein binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10570961	PMID:12477932	PMID:18555775	PMID:21231916	PMID:28755400

Genomics

Comparative Map Data

Dnajb5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	57,176,840 - 57,185,492 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,176,845 - 57,185,490 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	59,150,016 - 59,158,651 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	5	60,968,827 - 60,977,464 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	5	60,954,176 - 60,962,806 (+)	NCBI	Rnor_WKY
Rnor_6.0	5	58,393,197 - 58,402,162 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	58,393,233 - 58,401,870 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	62,918,571 - 62,927,544 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	59,437,972 - 59,446,618 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	59,438,114 - 59,446,798 (+)	NCBI
Celera	5	55,766,263 - 55,774,913 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

DNAJB5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	34,989,745 - 34,998,900 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	34,989,641 - 34,998,900 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	34,989,742 - 34,998,897 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	34,979,785 - 34,988,428 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	34,979,784 - 34,988,428	NCBI
Celera	9	34,921,313 - 34,930,330 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	34,944,573 - 34,953,628 (+)	NCBI		HuRef
CHM1_1	9	34,989,475 - 34,998,267 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	35,008,927 - 35,018,082 (+)	NCBI		T2T-CHM13v2.0

Dnajb5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	42,949,866 - 42,959,425 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	42,949,814 - 42,959,425 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	42,949,867 - 42,959,425 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	42,949,814 - 42,959,425 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	42,965,966 - 42,971,604 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	42,974,194 - 42,979,832 (+)	NCBI		MGSCv36	mm8
Celera	4	42,982,878 - 42,988,563 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI

Dnajb5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955472	1,167,160 - 1,178,726 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955472	1,168,568 - 1,177,849 (-)	NCBI	ChiLan1.0	ChiLan1.0

DNAJB5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	89,600,878 - 89,609,652 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	34,836,691 - 34,845,471 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	35,643,056 - 35,651,879 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	35,643,056 - 35,651,879 (+)	Ensembl	panpan1.1		panPan2

DNAJB5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	51,587,728 - 51,596,911 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	51,587,295 - 51,595,839 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,156,730 - 50,165,723 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	52,653,324 - 52,662,321 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	11	52,652,701 - 52,661,260 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	11	51,197,460 - 51,206,453 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	51,182,636 - 51,191,629 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	51,884,397 - 51,893,390 (+)	NCBI		UU_Cfam_GSD_1.0

Dnajb5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	166,490,957 - 166,501,120 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	3,039,183 - 3,048,803 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936524	3,038,489 - 3,047,546 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DNAJB5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	235,790,749 - 235,799,381 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	235,790,657 - 235,799,385 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	263,316,045 - 263,324,773 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DNAJB5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	45,620,081 - 45,628,916 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	45,619,281 - 45,628,304 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	42,742,005 - 42,751,048 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Dnajb5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624915	195,669 - 204,172 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624915	195,536 - 206,688 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Dnajb5
16 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	183
Count of miRNA genes:	120
Interacting mature miRNAs:	157
Transcripts:	ENSRNOT00000000142
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	1	90450412	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	729470	86724018	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	2282226	69540447	Rat
7394712	Emca13	Estrogen-induced mammary cancer QTL 13			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	9823266	99753708	Rat
1641903	Alcrsp3	Alcohol response QTL 3			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	12689285	57689285	Rat
634305	Mamtr1	Mammary tumor resistance QTL 1		0.0001	mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	12789751	113558310	Rat
1600358	Mamtr5	Mammary tumor resistance QTL 5			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	18873947	63873947	Rat
1358353	Srcrtb2	Stress Responsive Cort Basal QTL 2	3.48	0.003	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	18873947	74251464	Rat
8552954	Pigfal14	Plasma insulin-like growth factor 1 level QTL 14	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	21226744	66226744	Rat
1578767	Stresp17	Stress response QTL 17	4.3	0.01	blood aldosterone amount (VT:0005346)	plasma aldosterone level (CMO:0000551)	5	27955440	72955440	Rat
1578776	Stresp18	Stress response QTL 18	2.9		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	5	27955440	72955440	Rat
6903292	Stl28	Serum triglyceride level QTL 28	2.6	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	5	28515489	73515489	Rat
6903306	Scl35	Serum cholesterol QTL 35	2.6	0.0073	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	28515489	73515489	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1598807	Glom12	Glomerulus QTL 12	2.7		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	5	33215665	78215665	Rat
1298067	Scl15	Serum cholesterol level QTL 15	4.8	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	33215665	78215665	Rat
1302786	Kidm8	Kidney mass QTL 8	28.15		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	33215665	78215665	Rat
1576317	Eutr2	Estrogen induced uterine response QTL 2		0.01	uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	34730116	104251008	Rat
2316959	Gluco59	Glucose level QTL 59	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	34944474	113558310	Rat
1641922	Alcrsp8	Alcohol response QTL 8			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	5	35189153	68564008	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331773	Scl26	Serum cholesterol level QTL 26	3.065		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	43726656	86724018	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1300115	Hrtrt7	Heart rate QTL 7	2.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	47869062	90099692	Rat
9589025	Epfw7	Epididymal fat weight QTL 7	20.66	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	49463600	94463600	Rat
7411561	Bw134	Body weight QTL 134	24	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	49463600	94463600	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
2303615	Vencon7	Ventilatory control QTL 7		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	5	50983895	95983895	Rat
2303574	Gluco42	Glucose level QTL 42	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	53496719	98496719	Rat
61359	Eaex	Experimental allergic encephalomyelitis QTL x	3		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	5	55715622	100715622	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat

Markers in Region

AI462558

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,185,337 - 57,185,424 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,401,725 - 58,401,811	NCBI	Rnor6.0
Rnor_5.0	5	62,927,107 - 62,927,193	UniSTS	Rnor5.0
RGSC_v3.4	5	59,446,464 - 59,446,550	UniSTS	RGSC3.4
Celera	5	55,774,759 - 55,774,845	UniSTS
Cytogenetic Map	5	q22	UniSTS

RH140529

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	57,185,149 - 57,185,352 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	58,401,537 - 58,401,739	NCBI	Rnor6.0
Rnor_5.0	5	62,926,919 - 62,927,121	UniSTS	Rnor5.0
RGSC_v3.4	5	59,446,276 - 59,446,478	UniSTS	RGSC3.4
Celera	5	55,774,571 - 55,774,773	UniSTS
Cytogenetic Map	5	q22	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	36	2	2	2	2	8	11	74	24	32	2	8
Low	1	7	55	39	17	39				11	9	9
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001415952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	LC178459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000000142 ⟹ ENSRNOP00000000142

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	57,176,845 - 57,185,483 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,393,233 - 58,401,870 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080082 ⟹ ENSRNOP00000075003

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	57,177,369 - 57,185,490 (+)	Ensembl
Rnor_6.0 Ensembl	5	58,393,603 - 58,401,844 (+)	Ensembl

RefSeq Acc Id:

NM_001108004 ⟹ NP_001101474

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	57,176,845 - 57,185,492 (+)	NCBI
Rnor_6.0	5	58,393,233 - 58,401,879 (+)	NCBI
Rnor_5.0	5	62,918,571 - 62,927,544 (+)	NCBI
RGSC_v3.4	5	59,437,972 - 59,446,618 (+)	RGD
Celera	5	55,766,263 - 55,774,913 (+)	RGD

Sequence:

show sequence

CCCGGTCCCGCTGTCTGCGGCCGGCGGGCAGGCGACTCCTGTCCCGAGTGGAGGCGGCGGAGCC
GGAGCCGGGGGAGGGGGCAGCGGCTGATAGAAGGACCGCGGCGGCGCCCGCAGCTCCTCACCGC
AGCACCCCCACTGCAGGCTCGAGGAGCTTTCCGGAGCTTCCCACACTTCTGGGGAGAAGACTTC
TTAGCCAGCTTGATGTTTAAAATTCAGCTGGAGCCCTTAAAACTTCGAGCGTGGACGCTGAATG
GGTTTGTAAAGTTTCGAAACAAGGAGCCCAGCACCGGTCCAGTGGCTGTGATGGGAAAAGATTA
TTACAAGATTCTTGGAATCCCGTCTGGGGCCAACGAAGATGAGATCAAGAAAGCCTATCGAAAG
ATGGCCTTGAAGTACCACCCAGACAAGAACAAAGAACCCAACGCTGAGGAGAAGTTTAAGGAGA
TTGCCGAGGCCTACGACGTGCTGAGTGACCCTAAGAAACGGAGCCTGTATGACCAGTATGGGGA
GGAAGGCCTCAAGACCGGCGGTGGTACCTCAGGTGGCTCCGGTGGCTCCTTTCACTACACCTTT
CACGGGGACCCTCATGCCACCTTTGCTTCCTTCTTTGGTGGCTCCAACCCCTTCGATATCTTCT
TTGCCAGCAGCCGCTCCACTCGGCCTTTCAGTGGCTTTGACCCAGATGACATGGATGTGGATGA
AGATGAGGACCCATTTGGTGCCTTTGGCCGCTTTGGCTTCAATGGGCTGAGTAGGGGTCCGAGG
CGAGCCCCAGAACCACTGTACCCCCGGCGCAAGGTACAGGACCCCCCTGTGGTGCATGAGCTGC
GGGTGTCCCTGGAGGAGATCTACCACGGCTCCACCAAGCGCATGAAGATCACAAGGCGACGCCT
TAACCCCGATGGGCGAACTGTGCGCACCGAGGACAAAATCCTGCACATTGTCATCAAACGTGGC
TGGAAGGAGGGCACCAAGATTACCTTCCCCAAAGAGGGCGATGCCACACCCGACAACATCCCAG
CCGACATTGTCTTCGTGCTCAAAGACAAGCCTCATGCGCACTTTCGCCGAGATGGCACCAACGT
GCTCTACAGTGCACTCATCAGCCTCAAGGAGGCGCTGTGTGGCTGCACCGTGAACATTCCCACC
ATTGATGGCCGAGTGATCCCTTTACCCTGCAATGATGTTATTAAACCAGGCACCGTGAAGAGAC
TCCGTGGGGAGGGACTTCCCTTCCCCAAGGTGCCCACTCAGCGGGGAGACCTCATTGTTGAGTT
CAAAGTTCGATTCCCAGACAGATTAACCCCACAGACACGGCAGATCCTTAAACAGCACCTACCC
TGCTCCTAGGCTCTCCCTAGCCTGTCTGGAGCCCACCACAGCAATACCCCCACACTCACCAATC
TCATGTGGACCCGGCTGGATGTCCACCGGACACTGGCACTTTCCTAAAATGCAAGAAGCCACTG
ATTTTCAGGAAAATGTTCCTCTTCCCGACAACCCCTTTCGGAGCTGGGCTGCTTTGGGGGAATG
GGAGGGCGGTGGGGAGAACTAGCCCAGACCAGGGGTCAATTTTTTTGTCACGTGCTTTGAATCC
AGTTCCCACTGCAGTGGCTGGAGAGTGACTTGAGAGCTACTCGGAGCTATAGATTCCTTGTCCT
GCCTGTAAATAGCATGTCCTCCCCCTTCTCAGCCTTGCTAACACCTTTCCTCTCCCTTCCCCTC
GGCTTCCTCCTGTTTCTGGAGAAAGAAGTTAGAAAGGACACCGCTTCCCACCCCACCCCCAGGT
CTGTAGTGTCCGAGGCTATTTTGCACAAGTGTTCGTGCACATGAAGCACTCGCCAAAATGGTCC
GTGTCTCTCTGAGAGACAAGAAAGGACAGGAGGTAGGAAGGTCCCTTACCGATGAACAAGGCTG
TCATTTGAGCACGAGACACTTTTCATTTGGGGCAGGGAGGTGAGCCAACCCTTAGGAGCCTTCC
CAACAGCTGCCCTGCCTACACCCCACAGAGTTGGAGGATCTGTCCCCCTCAGCTGCTCTGGGGA
GTGTTCAGGGGTGGAGAGAAGAAAGGAGGGCCTGAACCATCCACCACAGCTAAGAGGTGGGGCA
GGACCCATCTCCCAGCCATCACCAGGAAGGAAAAGGGCTTTGGGATCAGGTGGCAGCTGTTCCC
CACCAAGAGATTCAGGATCACAGGTTCCTTCCCATATCTCTGAACTCAGGGCCTAGCCACCCCA
AACTTCCAAGCCCCACTTTTGCGATATGTGAAGCTACTTATTTCTTACTTTTCTTGGAGGCTGT
GTCGGAAATTTCCAGCCTCTCTGCCTGTGTGACCCTCACCCCACCCCACTCCCACAGTTGTATA
AAAGTCGAATAGTGAAGGAGCTGGGAGAAAACTGCTTCAGTTGGTCCTGGGGTGGGGTCTTTAG
GTTTTCTCACTTTGACAAGCCCCTGAATGTTTTTATAGTAGTTTTTTGTATTTTTTTGTAATGA
CAGTATTATGAAAAAAATAAAGTATTTTAAAAATATG

hide sequence

RefSeq Acc Id:

XM_006238071 ⟹ XP_006238133

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	57,177,374 - 57,185,492 (+)	NCBI
Rnor_6.0	5	58,394,010 - 58,402,162 (+)	NCBI
Rnor_5.0	5	62,918,571 - 62,927,544 (+)	NCBI

Sequence:

show sequence

AGGCCTTGCTGGGCCACGGCCTGTGGGAATCTGAGGAGGTGGCTTCCAGAGCTACAGCGTCCCA
GGCAGGCTCCGGTGGAGCGATCAGAGAAACAAGGAGCCCAGCACCGGTCCAGTGGCTGTGATGG
GAAAAGATTATTACAAGATTCTTGGAATCCCGTCTGGGGCCAACGAAGATGAGATCAAGAAAGC
CTATCGAAAGATGGCCTTGAAGTACCACCCAGACAAGAACAAAGAACCCAACGCTGAGGAGAAG
TTTAAGGAGATTGCCGAGGCCTACGACGTGCTGAGTGACCCTAAGAAACGGAGCCTGTATGACC
AGTATGGGGAGGAAGGCCTCAAGACCGGCGGTGGTACCTCAGGTGGCTCCGGTGGCTCCTTTCA
CTACACCTTTCACGGGGACCCTCATGCCACCTTTGCTTCCTTCTTTGGTGGCTCCAACCCCTTC
GATATCTTCTTTGCCAGCAGCCGCTCCACTCGGCCTTTCAGTGGCTTTGACCCAGATGACATGG
ATGTGGATGAAGATGAGGACCCATTTGGTGCCTTTGGCCGCTTTGGCTTCAATGGGCTGAGTAG
GGGTCCGAGGCGAGCCCCAGAACCACTGTACCCCCGGCGCAAGGTACAGGACCCCCCTGTGGTG
CATGAGCTGCGGGTGTCCCTGGAGGAGATCTACCACGGCTCCACCAAGCGCATGAAGATCACAA
GGCGACGCCTTAACCCCGATGGGCGAACTGTGCGCACCGAGGACAAAATCCTGCACATTGTCAT
CAAACGTGGCTGGAAGGAGGGCACCAAGATTACCTTCCCCAAAGAGGGCGATGCCACACCCGAC
AACATCCCAGCCGACATTGTCTTCGTGCTCAAAGACAAGCCTCATGCGCACTTTCGCCGAGATG
GCACCAACGTGCTCTACAGTGCACTCATCAGCCTCAAGGAGGCGCTGTGTGGCTGCACCGTGAA
CATTCCCACCATTGATGGCCGAGTGATCCCTTTACCCTGCAATGATGTTATTAAACCAGGCACC
GTGAAGAGACTCCGTGGGGAGGGACTTCCCTTCCCCAAGGTGCCCACTCAGCGGGGAGACCTCA
TTGTTGAGTTCAAAGTTCGATTCCCAGACAGATTAACCCCACAGACACGGCAGATCCTTAAACA
GCACCTACCCTGCTCCTAGGCTCTCCCTAGCCTGTCTGGAGCCCACCACAGCAATACCCCCACA
CTCACCAATCTCATGTGGACCCGGCTGGATGTCCACCGGACACTGGCACTTTCCTAAAATGCAA
GAAGCCACTGATTTTCAGGAAAATGTTCCTCTTCCCGACAACCCCTTTCGGAGCTGGGCTGCTT
TGGGGGAATGGGAGGGCGGTGGGGAGAACTAGCCCAGACCAGGGGTCAATTTTTTTGTCACGTG
CTTTGAATCCAGTTCCCACTGCAGTGGCTGGAGAGTGACTTGAGAGCTACTCGGAGCTATAGAT
TCCTTGTCCTGCCTGTAAATAGCATGTCCTCCCCCTTCTCAGCCTTGCTAACACCTTTCCTCTC
CCTTCCCCTCGGCTTCCTCCTGTTTCTGGAGAAAGAAGTTAGAAAGGACACCGCTTCCCACCCC
ACCCCCAGGTCTGTAGTGTCCGAGGCTATTTTGCACAAGTGTTCGTGCACATGAAGCACTCGCC
AAAATGGTCCGTGTCTCTCTGAGAGACAAGAAAGGACAGGAGGTAGGAAGGTCCCTTACCGATG
AACAAGGCTGTCATTTGAGCACGAGACACTTTTCATTTGGGGCAGGGAGGTGAGCCAACCCTTA
GGAGCCTTCCCAACAGCTGCCCTGCCTACACCCCACAGAGTTGGAGGATCTGTCCCCCTCAGCT
GCTCTGGGGAGTGTTCAGGGGTGGAGAGAAGAAAGGAGGGCCTGAACCATCCACCACAGCTAAG
AGGTGGGGCAGGACCCATCTCCCAGCCATCACCAGGAAGGAAAAGGGCTTTGGGATCAGGTGGC
AGCTGTTCCCCACCAAGAGATTCAGGATCACAGGTTCCTTCCCATATCTCTGAACTCAGGGCCT
AGCCACCCCAAACTTCCAAGCCCCACTTTTGCGATATGTGAAGCTACTTATTTCTTACTTTTCT
TGGAGGCTGTGTCGGAAATTTCCAGCCTCTCTGCCTGTGTGACCCTCACCCCACCCCACTCCCA
CAGTTGTATAAAAGTCGAATAGTGAAGGAGCTGGGAGAAAACTGCTTCAGTTGGTCCTGGGGTG
GGGTCTTTAGGTTTTCTCACTTTGACAAGCCCCTGAATGTTTTTATAGTAGTTTTTTGTATTTT
TTTGTAATGACAGTATTATGAAAAAAATAAAGTATTTTAAAAATATGGCCTCTGAGCAGAAGCA
GTAACCCTGGGTGCAGGCAGGAATAAAGTGGCACTGTCAGCCTCCTTCAGGGCCCTGATCATCC
AGGAAAGCCAAGCAGCCTCAGCAGCTGACGCTCACCCCTTCTCCCTGTAAGCTCTGACTTCTTG
GAATTCTGGAACATATACCCCAAACAAACAGCAACACCAGAAGCCACAGCCCAGCTGTCTGCGA
AGAAAGATGGGCCTTTGTTGTGAGAGAGAGCCTGGCCTCTTCAGAAGCTTGTCAACATGAGATC
TAGCACACTT

hide sequence

RefSeq Acc Id:

XM_006238072 ⟹ XP_006238134

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	57,176,840 - 57,185,492 (+)	NCBI
Rnor_6.0	5	58,393,231 - 58,402,162 (+)	NCBI
Rnor_5.0	5	62,918,571 - 62,927,544 (+)	NCBI

Sequence:

show sequence

CTCCCGGTCCCGCTGTCTGCGGCCGGCGGGCAGGCGACTCCTGTCCCGAGTGGAGGCGGCGGAG
CCGGAGCCGGGGGAGGGGGCAGCGGCTGATAGAAGGACCGCGGCGGCGCCCGCAGCTCCTCACC
GAAACAAGGAGCCCAGCACCGGTCCAGTGGCTGTGATGGGAAAAGATTATTACAAGATTCTTGG
AATCCCGTCTGGGGCCAACGAAGATGAGATCAAGAAAGCCTATCGAAAGATGGCCTTGAAGTAC
CACCCAGACAAGAACAAAGAACCCAACGCTGAGGAGAAGTTTAAGGAGATTGCCGAGGCCTACG
ACGTGCTGAGTGACCCTAAGAAACGGAGCCTGTATGACCAGTATGGGGAGGAAGGCCTCAAGAC
CGGCGGTGGTACCTCAGGTGGCTCCGGTGGCTCCTTTCACTACACCTTTCACGGGGACCCTCAT
GCCACCTTTGCTTCCTTCTTTGGTGGCTCCAACCCCTTCGATATCTTCTTTGCCAGCAGCCGCT
CCACTCGGCCTTTCAGTGGCTTTGACCCAGATGACATGGATGTGGATGAAGATGAGGACCCATT
TGGTGCCTTTGGCCGCTTTGGCTTCAATGGGCTGAGTAGGGGTCCGAGGCGAGCCCCAGAACCA
CTGTACCCCCGGCGCAAGGTACAGGACCCCCCTGTGGTGCATGAGCTGCGGGTGTCCCTGGAGG
AGATCTACCACGGCTCCACCAAGCGCATGAAGATCACAAGGCGACGCCTTAACCCCGATGGGCG
AACTGTGCGCACCGAGGACAAAATCCTGCACATTGTCATCAAACGTGGCTGGAAGGAGGGCACC
AAGATTACCTTCCCCAAAGAGGGCGATGCCACACCCGACAACATCCCAGCCGACATTGTCTTCG
TGCTCAAAGACAAGCCTCATGCGCACTTTCGCCGAGATGGCACCAACGTGCTCTACAGTGCACT
CATCAGCCTCAAGGAGGCGCTGTGTGGCTGCACCGTGAACATTCCCACCATTGATGGCCGAGTG
ATCCCTTTACCCTGCAATGATGTTATTAAACCAGGCACCGTGAAGAGACTCCGTGGGGAGGGAC
TTCCCTTCCCCAAGGTGCCCACTCAGCGGGGAGACCTCATTGTTGAGTTCAAAGTTCGATTCCC
AGACAGATTAACCCCACAGACACGGCAGATCCTTAAACAGCACCTACCCTGCTCCTAGGCTCTC
CCTAGCCTGTCTGGAGCCCACCACAGCAATACCCCCACACTCACCAATCTCATGTGGACCCGGC
TGGATGTCCACCGGACACTGGCACTTTCCTAAAATGCAAGAAGCCACTGATTTTCAGGAAAATG
TTCCTCTTCCCGACAACCCCTTTCGGAGCTGGGCTGCTTTGGGGGAATGGGAGGGCGGTGGGGA
GAACTAGCCCAGACCAGGGGTCAATTTTTTTGTCACGTGCTTTGAATCCAGTTCCCACTGCAGT
GGCTGGAGAGTGACTTGAGAGCTACTCGGAGCTATAGATTCCTTGTCCTGCCTGTAAATAGCAT
GTCCTCCCCCTTCTCAGCCTTGCTAACACCTTTCCTCTCCCTTCCCCTCGGCTTCCTCCTGTTT
CTGGAGAAAGAAGTTAGAAAGGACACCGCTTCCCACCCCACCCCCAGGTCTGTAGTGTCCGAGG
CTATTTTGCACAAGTGTTCGTGCACATGAAGCACTCGCCAAAATGGTCCGTGTCTCTCTGAGAG
ACAAGAAAGGACAGGAGGTAGGAAGGTCCCTTACCGATGAACAAGGCTGTCATTTGAGCACGAG
ACACTTTTCATTTGGGGCAGGGAGGTGAGCCAACCCTTAGGAGCCTTCCCAACAGCTGCCCTGC
CTACACCCCACAGAGTTGGAGGATCTGTCCCCCTCAGCTGCTCTGGGGAGTGTTCAGGGGTGGA
GAGAAGAAAGGAGGGCCTGAACCATCCACCACAGCTAAGAGGTGGGGCAGGACCCATCTCCCAG
CCATCACCAGGAAGGAAAAGGGCTTTGGGATCAGGTGGCAGCTGTTCCCCACCAAGAGATTCAG
GATCACAGGTTCCTTCCCATATCTCTGAACTCAGGGCCTAGCCACCCCAAACTTCCAAGCCCCA
CTTTTGCGATATGTGAAGCTACTTATTTCTTACTTTTCTTGGAGGCTGTGTCGGAAATTTCCAG
CCTCTCTGCCTGTGTGACCCTCACCCCACCCCACTCCCACAGTTGTATAAAAGTCGAATAGTGA
AGGAGCTGGGAGAAAACTGCTTCAGTTGGTCCTGGGGTGGGGTCTTTAGGTTTTCTCACTTTGA
CAAGCCCCTGAATGTTTTTATAGTAGTTTTTTGTATTTTTTTGTAATGACAGTATTATGAAAAA
AATAAAGTATTTTAAAAATATGGCCTCTGAGCAGAAGCAGTAACCCTGGGTGCAGGCAGGAATA
AAGTGGCACTGTCAGCCTCCTTCAGGGCCCTGATCATCCAGGAAAGCCAAGCAGCCTCAGCAGC
TGACGCTCACCCCTTCTCCCTGTAAGCTCTGACTTCTTGGAATTCTGGAACATATACCCCAAAC
AAACAGCAACACCAGAAGCCACAGCCCAGCTGTCTGCGAAGAAAGATGGGCCTTTGTTGTGAGA
GAGAGCCTGGCCTCTTCAGAAGCTTGTCAACATGAGATCTAGCACACTT

hide sequence

RefSeq Acc Id:

XM_039110129 ⟹ XP_038966057

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	5	57,177,718 - 57,185,492 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101474	(Get FASTA)	NCBI Sequence Viewer
	NP_001402881	(Get FASTA)	NCBI Sequence Viewer
	XP_006238133	(Get FASTA)	NCBI Sequence Viewer
	XP_006238134	(Get FASTA)	NCBI Sequence Viewer
	XP_038966057	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66524	(Get FASTA)	NCBI Sequence Viewer
	BBA53818	(Get FASTA)	NCBI Sequence Viewer
	EDL98714	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101474 ⟸ NM_001108004

- UniProtKB:

D3ZB76 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFKIQLEPLKLRAWTLNGFVKFRNKEPSTGPVAVMGKDYYKILGIPSGANEDEIKKAYRKMALK
YHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLYDQYGEEGLKTGGGTSGGSGGSFHYTFHGDP
HATFASFFGGSNPFDIFFASSRSTRPFSGFDPDDMDVDEDEDPFGAFGRFGFNGLSRGPRRAPE
PLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKITRRRLNPDGRTVRTEDKILHIVIKRGWKEG
TKITFPKEGDATPDNIPADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGR
VIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTRQILKQHLPCS

hide sequence

RefSeq Acc Id:

XP_006238134 ⟸ XM_006238072

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLY
DQYGEEGLKTGGGTSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDD
MDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKI
TRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRR
DGTNVLYSALISLKEALCGCTVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGD
LIVEFKVRFPDRLTPQTRQILKQHLPCS

hide sequence

RefSeq Acc Id:

XP_006238133 ⟸ XM_006238071

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGKDYYKILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRSLY
DQYGEEGLKTGGGTSGGSGGSFHYTFHGDPHATFASFFGGSNPFDIFFASSRSTRPFSGFDPDD
MDVDEDEDPFGAFGRFGFNGLSRGPRRAPEPLYPRRKVQDPPVVHELRVSLEEIYHGSTKRMKI
TRRRLNPDGRTVRTEDKILHIVIKRGWKEGTKITFPKEGDATPDNIPADIVFVLKDKPHAHFRR
DGTNVLYSALISLKEALCGCTVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGD
LIVEFKVRFPDRLTPQTRQILKQHLPCS

hide sequence

RefSeq Acc Id:

ENSRNOP00000075003 ⟸ ENSRNOT00000080082

RefSeq Acc Id:

ENSRNOP00000000142 ⟸ ENSRNOT00000000142

RefSeq Acc Id:	XP_038966057 ⟸ XM_039110129
- Peptide Label:	isoform X1

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K9H9-F1-model_v2	AlphaFold	A0A0G2K9H9	1-420	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693665

Promoter ID:

EPDNEW_R4190

Type:

initiation region

Name:

Dnajb5_1

Description:

DnaJ heat shock protein family member B5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	58,393,273 - 58,393,333	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307453	AgrOrtholog
BioCyc Gene	G2FUF-41529	BioCyc
Ensembl Genes	ENSRNOG00000000130	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000000142	ENTREZGENE
	ENSRNOP00000000142.4	UniProtKB/TrEMBL
	ENSRNOP00000075003	ENTREZGENE
	ENSRNOP00000075003.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000000142	ENTREZGENE
	ENSRNOT00000000142.8	UniProtKB/TrEMBL
	ENSRNOT00000080082	ENTREZGENE
	ENSRNOT00000080082.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
	Urease metallochaperone UreE, N-terminal domain	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134849	IMAGE-MGC_LOAD
InterPro	DnaJ_C	UniProtKB/TrEMBL
	DnaJ_dom_sf	UniProtKB/TrEMBL
	DnaJ_N	UniProtKB/TrEMBL
	Heat_shock_DnaJ_CS	UniProtKB/TrEMBL
	HSP40/DnaJ_pept-bd	UniProtKB/TrEMBL
KEGG Report	rno:313811	UniProtKB/TrEMBL
MGC_CLONE	MGC:188111	IMAGE-MGC_LOAD
NCBI Gene	313811	ENTREZGENE
PANTHER	DNAJ HOMOLOG SUBFAMILY B MEMBER 5	UniProtKB/TrEMBL
	DNAJ HOMOLOG SUBFAMILY C MEMBER	UniProtKB/TrEMBL
Pfam	DnaJ	UniProtKB/TrEMBL
	DnaJ_C	UniProtKB/TrEMBL
PhenoGen	Dnajb5	PhenoGen
PRINTS	DNAJPROTEIN	UniProtKB/TrEMBL
PROSITE	DNAJ_1	UniProtKB/TrEMBL
	DNAJ_2	UniProtKB/TrEMBL
SMART	DnaJ	UniProtKB/TrEMBL
Superfamily-SCOP	DnaJ_N	UniProtKB/TrEMBL
	HSP40_DnaJ_pep	UniProtKB/TrEMBL
UniProt	A0A0G2K9H9	ENTREZGENE, UniProtKB/TrEMBL
	B2GV48_RAT	UniProtKB/TrEMBL
	D3ZB76	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-11-25	Dnajb5	DnaJ heat shock protein family (Hsp40) member B5	Dnajb5	DnaJ (Hsp40) homolog, subfamily B, member 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Dnajb5	DnaJ (Hsp40) homolog, subfamily B, member 5	Dnajb5_predicted	DnaJ (Hsp40) homolog, subfamily B, member 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Dnajb5_predicted	DnaJ (Hsp40) homolog, subfamily B, member 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar