Gene: Patj (PATJ, crumbs cell polarity complex component) Rattus norvegicus
Analyze
Symbol: Patj
Name: PATJ, crumbs cell polarity complex component
Description: ASSOCIATED WITH Prostatic Neoplasms (ortholog); substance-related disorder (ortholog); FOUND IN protein-containing complex; apical part of cell (ortholog); bicellular tight junction (ortholog); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; amitriptyline
AGR Description: Localizes to the protein-containing complex; orthologous to human PATJ (PATJ crumbs cell polarity complex component).
Merged Description: Localizes to the protein-containing complex; orthologous to human PATJ (PATJ crumbs cell polarity complex component); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; amitriptyline.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: InaD-like 2; InaD-like 2 (Drosophila); inaD-like protein; Inadl; Inadl2; LOC313382; PDZ domain protein; PDZ domain protein (Drosophila inaD-like); RGD1565362; similar to channel-interacting pdz domain protein isoform 1
Orthologs:
Homo sapiens (human) : PATJ (PATJ crumbs cell polarity complex component)  HGNC  Alliance
Mus musculus (house mouse) : Patj (PATJ, crumbs cell polarity complex component)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Patj (PATJ crumbs cell polarity complex component)
Pan paniscus (bonobo/pygmy chimpanzee) : PATJ (PATJ crumbs cell polarity complex component)
Canis lupus familiaris (dog) : PATJ (PATJ crumbs cell polarity complex component)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Patj (PATJ crumbs cell polarity complex component)
Sus scrofa (pig) : PATJ (PATJ crumbs cell polarity complex component)
more info ...
Allele / Splice: PatjTn(sb-T2/Bart3)2.343Mcwi  
Genetic Models: F344-PatjTn(sb-T2/Bart3)2.343Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05117,038,548 - 117,340,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05120,981,525 - 121,281,044 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45118,806,744 - 119,131,114 (+)NCBIRGSC3.4rn4RGSC3.4
Celera5111,633,199 - 111,931,738 (+)NCBICelera
Cytogenetic Map5q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Patj
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1565362
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.