Livw2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Livw2 (Liver weight QTL 2) Rattus norvegicus

Symbol: Livw2
Name: Liver weight QTL 2
RGD ID: 1582212
Previously known as: Liver weight/100g; Liver wt/100g
Trait: liver mass   (VT:0003402)    
Measurement Type: liver weight to body weight ratio   (CMO:0000633)    
LOD Score: 3.5
P Value: 4.0E-4
Variance: 12.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2599,016,066 - 119,085,810RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05102,498,468 - 123,852,688RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05106,525,895 - 127,710,319RGDRnor5.0
RGSC_v3.45103,701,215 - 125,255,195RGDRGSC3.4
RGSC_v3.15103,706,178 - 125,260,686RGD
Cross Type: intercross
Strains Crossed: PD/Cub BN/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait
liver mass  (IDA)

Rat Strain
BN/Cub  (IEA)
PD/Cub  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Dynamic genetic architecture of metabolic syndrome attributes in the rat. Seda O, etal., Physiol Genomics. 2005 Apr 14;21(2):243-52. Epub 2005 Feb 22.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41379561LOC120103247U7 small nuclear RNA59922995599230058Rat
9071259LOC103692399uncharacterized LOC10369239959925428299256197Rat
1308101Cntlncentlein59929586599576402Rat
1585925Ppia-ps11peptidylprolyl isomerase A, pseudogene 1159961185299612369Rat
620276Sh3gl2SH3 domain containing GRB2 like 2, endophilin A159965318999827500Rat
41170419Pgam1-ps6phosphoglycerate mutase 1, pseudogene 659968598999686573Rat
1306439Adamtsl1ADAMTS-like 1599964406100919786Rat
1583685Saxo1stabilizer of axonemal microtubules 15100937134101093308Rat
619804RragaRas-related GTP binding A5101113341101114936Rat
15203474Haus6HAUS augmin like complex subunit 65101116532101156396Rat
41394140Scarna8small Cajal body-specific RNA 85101124125101124255Rat
728889Plin2perilipin 25101156648101211738Rat
7660377LOC102547623uncharacterized LOC1025476235101226928101245243Rat
1308489Dennd4cDENN domain containing 4C5101272298101369529Rat
3602Rps6ribosomal protein S65101371716101374576Rat
1304629Acer2alkaline ceramidase 25101391830101442615Rat
628650Slc24a2solute carrier family 24 member 25101497916101741840Rat
11459931LOC108350995uncharacterized LOC1083509955102119628102128446Rat
620940Mllt3MLLT3, super elongation complex subunit5102259075102515447Rat
41316176LOC120103312small nucleolar RNA SNORA175102483194102483318Rat
1311849Focadfocadhesin5102564560102886587Rat
1310339Hacd43-hydroxyacyl-CoA dehydratase 45102887597102915376Rat
2865Ifnb1interferon beta 15103020758103021595Rat
1306334Ifna4interferon, alpha 45103069174103070120Rat
1306135Ifna1interferon, alpha 15103097356103097925Rat
1589875Ifna7l-ps1interferon, alpha 7 like, pseudogene 15103104672103105585Rat
41171666LOC120103203U6 spliceosomal RNA5103109366103109474Rat
1561246Ifna1l1interferon, alpha 1 like 15103144515103145269Rat
1359312Ifna5interferon, alpha 55103187852103188430Rat
1561827Ifna2l1interferon alpha 2 like 15103196737103197803Rat
1565225Ifna16l1interferon, alpha 16-like 15103216368103216984Rat
6487214LOC100912356interferon alpha-1-like5103227820103230500Rat
1311425Ifna2interferon alpha 25103258617103259195Rat
6502836LOC100909643interferon alpha-1-like5103273737103275988Rat
6487699LOC100912314interferon alpha-1-like5103285510103288640Rat
1559679Ifna4l2interferon, alpha 4 like 25103305221103305862Rat
41029367Rpl27a-ps12ribosomal protein L27a, pseudogene 125103328721103329166Rat
1304814Klhl9kelch-like family member 95103333747103337931Rat
1591738Rps24-ps10ribosomal protein S24, pseudogene 105103343786103344309Rat
41279671LOC120103158interferon alpha-12-like5103378576103379147Rat
41164037LOC120103159interferon alpha-12-like5103407135103407884Rat
41162071LOC120103160interferon alpha-12-like5103426092103427016Rat
41097131LOC120103161interferon alpha-12-like5103441204103442180Rat
40975974LOC120103162interferon alpha-1-like5103455380103455934Rat
1560539Ifna12linterferon alpha 12 like5103476362103477427Rat
41024711LOC120103163interferon alpha-12-like5103494442103495077Rat
41140167LOC120103164interferon alpha-12-like5103509610103510260Rat
6492384Ifna4l1interferon, alpha 4 like 15103524733103525302Rat
41074433LOC120103372U4 spliceosomal RNA5103532146103532302Rat
1565065Ifneinterferon, epsilon5103571630103572290Rat
329845494LOC130062807uncharacterized LOC1300628075103598328103627530Rat
4888605Mir3554microRNA 35545103599032103599149Rat
2325391Mir31microRNA 315103599038103599143Rat
329845392LOC130062808uncharacterized LOC1300628085103627694103629756Rat
1583723Nmt1-ps1N-myristoyltransferase 1, pseudogene 15103658873103662295Rat
11413299LOC108350998uncharacterized LOC1083509985103757997103779881Rat
2318341C5h9orf85similar to human chromosome 9 open reading frame 855103767094103767986Rat
1310114Mtapmethylthioadenosine phosphorylase5103874460103920684Rat
41034517Gskip-ps1GSK3B interacting protein, pseudogene 15103941903103943310Rat
2323Cdkn2acyclin-dependent kinase inhibitor 2A5103984949103992143Rat
2324Cdkn2bcyclin-dependent kinase inhibitor 2B5104009839104019082Rat
7697358LOC102552523uncharacterized LOC1025525235104019105104127037Rat
1588220Hspd1-ps14heat shock protein family D (Hsp60) member 1, pseudogene 145104129384104131678Rat
41260363LOC120102910uncharacterized LOC1201029105104171383104185974Rat
9404082LOC103692411uncharacterized LOC1036924115104410856104415793Rat
1309796Dmrta1DMRT-like family A15104415893104422433Rat
1584925Lmntd1-ps1lamin tail domain containing 1, pseudogene 15104595779104597302Rat
1560729Rps24-ps18ribosomal protein S24, pseudogene 185104729321104730083Rat
1563227Zfp352zinc finger protein 3525104946243104948087Rat
1310095Zfp353zinc finger protein 3535105075075105076667Rat
1583722Eef1g-ps13eukaryotic translation elongation factor 1 gamma, pseudogene 135105085925105111382Rat
1585888Vdac1-ps2voltage-dependent anion channel 1, pseudogene 25105313273105321698Rat
41388855Rnu6-698RNA, U6 small nuclear 6985105346075105346181Rat
6498356Ktn1-ps1kinectin 1, pseudogene 15105565480105575498Rat
41255483Ppia-ps8peptidylprolyl isomerase A, pseudogene 85105600882105603060Rat
41097241LOC120103318small nucleolar RNA SNORA175105738478105738609Rat
1584923Rps7-ps19ribosomal protein S7, pseudogene 195105902114105902692Rat
628611Elavl2ELAV like RNA binding protein 25105960872106086463Rat
41069231LOC120103166uncharacterized LOC1201031665106108110106109796Rat
41143086LOC120103387U6 spliceosomal RNA5106129987106130093Rat
7592700LOC102554351uncharacterized LOC1025543515106358753106371776Rat
6498231Hspd1-ps33heat shock protein family D (Hsp60) member 1, pseudogene 335106398781106403426Rat
2324467Izumo3IZUMO family member 35106874321106876978Rat
11416818LOC108351001uncharacterized LOC1083510015106877052106903186Rat
1560983Hnrnpa1-ps24heterogeneous nuclear ribonucleoprotein A1, pseudogene 245106906066106907230Rat
2323226Spcs2-ps1signal peptidase complex subunit 2, pseudogene 15106913633106915036Rat
1583529Cks1lCDC28 protein kinase regulatory subunit 1-like5106982443106983182Rat
1561150Hspd1l2heat shock protein family D (Hsp60) member 1 like 25107131587107131895Rat
41136247Rpl5-ps11ribosomal protein L5, pseudogene 115107212048107217257Rat
41394794LOC120103236U6 spliceosomal RNA5107652473107652571Rat
1592090Snu13-ps4small nuclear ribonucleoprotein 13, pseudogene 45107912017107912407Rat
41074883Tusc1tumor suppressor candidate 15108089952108091315Rat
7543605LOC102546952uncharacterized LOC1025469525108270998108359486Rat
41358010Rpl19-ps7ribosomal protein L19, pseudogene 75108333257108335787Rat
9284656LOC103692415uncharacterized LOC1036924155108723428108734153Rat
41215040LOC120102919uncharacterized LOC1201029195108831467108907138Rat
1560251Caap1caspase activity and apoptosis inhibitor 15109313253109414323Rat
40937684LOC120102920uncharacterized LOC1201029205109330329109338769Rat
621245Plaaphospholipase A2, activating protein5109428600109460373Rat
1359704Ift74intraflagellar transport 745109460372109563839Rat
1591722Lrrc19leucine rich repeat containing 195109494891109507948Rat
2325363Mir872microRNA 8725109539086109539166Rat
620980TekTEK receptor tyrosine kinase5109607077109733805Rat
1563332Eqtnequatorin5109734495109762048Rat
1311787Mysm1myb-like, SWIRM and MPN domains 15109761345109826652Rat
40989424LOC120103252small nucleolar RNA SNORA705109807447109807582Rat
41394229LOC120102921uncharacterized LOC1201029215109883550109887133Rat
2943JunJun proto-oncogene, AP-1 transcription factor subunit5109894175109897268Rat
6494360LOC100911221uncharacterized LOC1009112215109897523109949196Rat
7593337LOC102550339uncharacterized LOC1025503395110107244110110709Rat
40929618LOC120102923uncharacterized LOC1201029235110179996110186201Rat
41402458LOC120102924uncharacterized LOC1201029245110208856110225659Rat
41145702LOC120103235U1 spliceosomal RNA5110355813110355974Rat
1359429FggyFGGY carbohydrate kinase domain containing5110398866110786019Rat
9417869LOC103692418uncharacterized LOC1036924185110605125110712729Rat
41241770LOC120102925uncharacterized LOC1201029255110819794110824522Rat
1309987Hook1hook microtubule-tethering protein 15110824501110887791Rat
6486125LOC100912642cytochrome P450 2J3-like5110908195110930402Rat
1563215Cyp2j10cytochrome P450, family 2, subfamily j, polypeptide 105110960319110995220Rat
40982088Cyp2j16-ps1cytochrome P450, family 2, subfamily j, polypeptide 16, pseudogene 15111007780111057797Rat
1561242Cyp2j16cytochrome P450, family 2, subfamily j, polypeptide 165111089438111138918Rat
620007Cyp2j4cytochrome P450, family 2, subfamily j, polypeptide 45111179981111207490Rat
631442Cyp2j3cytochrome P450, family 2, subfamily j, polypeptide 35111219921111244987Rat
11381498LOC108351103ferritin light chain 1 pseudogene5111247525111248020Rat
1560146C5h1orf87similar to human chromosome 1 open reading frame 875111342381111411576Rat
41012570LOC120103241U7 small nuclear RNA5111397995111398057Rat
41316576LOC120103249U7 small nuclear RNA5111531651111531712Rat
41245849LOC120103242U7 small nuclear RNA5111531726111531787Rat
1597743Gid8-ps1GID complex subunit 8 homolog, pseudogene 15111562436111563265Rat
1592089Tbc1d5-ps1TBC1 domain family, member 5, pseudogene 15111564652111573058Rat
40966355LOC120103290small nucleolar RNA SNORA485111718328111718474Rat
7502785LOC102553524uncharacterized LOC1025535245112230510112246625Rat
41175373LOC120103115uncharacterized LOC1201031155112244680112248682Rat
41107926LOC120103114uncharacterized LOC1201031145112416267112442856Rat
3170Nfianuclear factor I/A5112436655112781878Rat
11413852LOC108351005uncharacterized LOC1083510055112797944112805529Rat
2318487Rps18l5ribosomal protein S18-like 55112997100112997655Rat
1305442Tm2d1TM2 domain containing 15113020793113062134Rat
1565362PatjPATJ, crumbs cell polarity complex component5113061985113364807Rat
1595093L1td1LINE-1 type transposase domain containing 15113373193113386088Rat
1307635Kank4KN motif and ankyrin repeat domains 45113401491113465526Rat
41215575Usp15-ps2ubiquitin specific peptidase 15, pseudogene 25113559958113563874Rat
1306461Usp1ubiquitin specific peptidase 15113587564113598934Rat
1309790Dock7dedicator of cytokinesis 75113599371113782871Rat
1564505Angptl3angiopoietin-like 35113703007113710044Rat
40981943Rpl15-ps14ribosomal protein L15, pseudogene 145113792289113793252Rat
1598323Atg4cautophagy related 4C, cysteine peptidase5113867218113935534Rat
7514994LOC102556219uncharacterized LOC1025562195113969322113977654Rat
2318140Tomm7-ps2translocase of outer mitochondrial membrane 7, pseudogene 25114217624114218000Rat
1591391Nsmce1-ps1NSE1 homolog, SMC5-SMC6 complex component, pseudogene 15114291743114292689Rat
7645046LOC102556374uncharacterized LOC1025563745114332364114334002Rat
621715Foxd3forkhead box D35114335084114337450Rat
1308815Alg6ALG6, alpha-1,3-glucosyltransferase5114404972114454440Rat
1310044Itgb3bpintegrin subunit beta 3 binding protein5114460217114525538Rat
1561825Efcab7EF-hand calcium binding domain 75114525403114576130Rat
3316Pgm1phosphoglucomutase 15114595298114654728Rat
1559469Ror1receptor tyrosine kinase-like orphan receptor 15114744311115088155Rat
41197686Rnu6-233RNA, U6 small nuclear 2335115066080115066186Rat
41373478LOC120103197U6 spliceosomal RNA5115097451115097553Rat
1565480Ube2uubiquitin conjugating enzyme E2 U5115118234115187296Rat
1310770Cachd1cache domain containing 15115411833115637312Rat
1307610Raver2ribonucleoprotein, PTB-binding 25115700985115780465Rat
69056Jak1Janus kinase 15115780248115888841Rat
41340414LOC120103217U6 spliceosomal RNA5115816834115816936Rat
41350661LOC120103254small nucleolar RNA SNORA705115961775115961902Rat
41367836LOC120102934uncharacterized LOC1201029345115963226115977411Rat
2325348Mir101amicroRNA 101a5115966332115966406Rat
41361854Rpl9-ps16ribosomal protein L9, pseudogene 165115982278115982849Rat
2078Ak4adenylate kinase 45116039222116099064Rat
1309900Dnajc6DnaJ heat shock protein family (Hsp40) member C65116120069116283448Rat
41379665LOC120102936uncharacterized LOC1201029365116198317116217439Rat
621034Leprotleptin receptor overlapping transcript5116289843116301951Rat
3001Leprleptin receptor5116294409116477904Rat
11421297Oog3-ps1oogenesin 3, pseudogene 15116480878116483954Rat
6500251Pramef12-ps1PRAME family member 12, pseudogene 15116534373116537110Rat
1587828Pramel18PRAME like 185116594690116601043Rat
7559665Oog3l2oogenesin 3 like 25116613783116615014Rat
41346487LOC120103168uncharacterized LOC1201031685116670973116707048Rat
3280Pde4bphosphodiesterase 4B5116799819117369155Rat
9264036LOC103692427uncharacterized LOC1036924275117278306117329847Rat
7556402LOC102548249uncharacterized LOC1025482495117352521117412598Rat
1564957Sgip1SH3GL interacting endocytic adaptor 15117536752117734593Rat
1311932Dynlt5dynein light chain Tctex-type family member 55117735509117758221Rat
9390410LOC103692428small EDRK-rich factor 2 pseudogene5117764116117764318Rat
7747960Insl5insulin like 55117773104117777376Rat
1311027Dnai4dynein axonemal intermediate chain 45117787398117876216Rat
1562337Mier1MIER1 transcriptional regulator5117876012117927592Rat
1309843Slc35d1solute carrier family 35 member D15117928628117981289Rat
1562532C5h1orf141similar to human chromosome 1 open reading frame 1415118000865118064520Rat
1304821Oma1OMA1 zinc metallopeptidase5118083728118136980Rat
41284048LOC120103366small nucleolar RNA U35118248246118248345Rat
1584921Ndufs2-ps1NADH:ubiquinone oxidoreductase core subunit S2, pseudogene 15118333499118337190Rat
628770Dab1DAB adaptor protein 15118392953119513625Rat
41398222LOC120103116uncharacterized LOC1201031165118861720118905161Rat
1592786Krt18-ps5keratin 18, pseudogene 55118885696118887657Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10321D5Lev171235103991975103992098Ratregion
10826D5Mgh231225109897808109897936Ratregion
10827D5Lev152925109894810109895102Ratregion
11090D5Rhm21695114659557114659726Ratregion
33804D5Mit62165117817033117817245Ratregion
34041D5Mit51445104250862104251008Ratregion
36139D5Rat271365118370674118370807Ratregion
35306D5Rat261545113558156113558310Ratregion
37200D5Rat782375114305693114305938Ratregion
37644D5Rat1152035112419535112419733Ratregion
37772DXRat532795103857355103857402Ratregion
36687D5Rat251745113060909113061097Ratregion
35074D5Rat232055102084761102084960Ratregion
35785D5Rat242965101278414101278701Ratregion
35961D5Rat5318859921653999216724Ratregion
39952D5Rat1582055119085612119085810Ratregion
38156D5Rat1012115116021949116022166Ratregion
40548D5Rat1551545110589458110589608Ratregion
40574D5Rat19615059948599799486133Ratregion
38508D5Rat602465101467719101467963Ratregion
39066D5Rat712155109967940109968152Ratregion
39248D5Rat722265114973303114973531Ratregion
42750D5Rat23123759988536199885595Ratregion
42751D5Rat2322335114305693114305935Ratregion
42752D5Rat2332205118714244118714492Ratregion
41192D5Rat1522205102816790102817014Ratregion
41424D5Rat1561755110265888110266058Ratregion
42319D5Rat2562405108938288108938528Ratregion
41560D5Rat1531635103689353103689768Ratregion
41560D5Rat1531635103689674103690167Ratregion
41560D5Rat1531635103689997103690167Ratregion
41576D5Rat15115959975354899753708Ratregion
41678D5Rat1971815112426055112426208Ratregion
44552D9Wox211365109552936109552993Ratregion
43932D5Got12914959961461499614763Ratregion
43934D5Got301335100749175100749308Ratregion
43935D5Got281395101660429101660568Ratregion
43936D5Got1311535101112265101112414Ratregion
43940D5Got271705104607788104607958Ratregion
43942D5Got331385110075805110075940Ratregion
43943D5Got361265109141749109141875Ratregion
43944D5Wox182735112450727112450995Ratregion
43945D5Got391875112936348112936533Ratregion
43948D5Got381475112393083112393230Ratregion
43949D5Got1331865113505602113505790Ratregion
43951D5Got371545114165957114166111Ratregion
60480D5Got251255106732222106732345Ratregion
60481D5Got312325101703657101703889Ratregion
60482D5Got322175117744887117745099Ratregion
60483D5Got342775111548415111548692Ratregion
60484D5Got351605111564698111564858Ratregion
60808D5Wox251585109050865109051012Ratregion
69515D5Uwm231865101607489101607673Ratregion
69519D5Uwm251865101387969101388153Ratregion
69521D5Uwm261335101847538101847681Ratregion
69523D5Uwm271455103005080103005247Ratregion
69525D5Uwm281445105629979105630117Ratregion
69527D5Uwm291635109719127109719390Ratregion
69547D5Uwm301695115439450115439638Ratregion
62484D5Uia21335105221933105222066Ratregion
66444D5Uia123925107521767107522145Ratregion
629614D5Hmgc11675101374078101374246Ratregion
67361D5Arb172445109897663109897907Ratregion
1631883D5Got2451045117534427117534531Ratregion
1626716D5Rhw111775116758053116758230Ratregion
1626718D5Rhw211925116967554116967746Ratregion
1626720D5Rhw221605116975112116975270Ratregion
1626724D5Rhw101835116748741116748924Ratregion
1626726D5Rhw72065116653633116653839Ratregion
1626728D5Rhw182295116909826116910055Ratregion
1626734D5Rhw81905116668797116668989Ratregion
1626736D5Rhw152365116821291116821529Ratregion
1626738D5Rhw52195116520024116520243Ratregion
1626740D5Rhw141615116799321116799482Ratregion
1626742D5Rhw91795116741307116741486Ratregion
1626744D5Rhw201575116958954116959109Ratregion
1626746D5Rhw41635116480095116480258Ratregion
1626750D5Rhw171965116900099116900295Ratregion
1626754D5Rhw122025116763310116763512Ratregion
1626756D5Rhw22045116215221116215425Ratregion
1626760D5Rhw191565116944810116944966Ratregion
1626770D5Rhw31675116259680116259847Ratregion
1626774D5Rhw12105116206626116206836Ratregion
1626776D5Rhw131915116795765116795958Ratregion
1626780D5Rhw165116844944116845134Ratregion
1627311Pde4b2005116993488116993688Ratregion
1627770D5Wox415101502201101502377Ratregion
1628979D5Wox381815116360112116360293Ratregion
1629468D5Got1323005115813691115813986Ratregion
1629713D5Got2441445113426023113426167Ratregion
1639895D5Got2461515117177749117177900Ratregion
1640622D5Got3112495114773489114773738Ratregion
1635541D5Got2421325111179889111180021Ratregion
1635885D5Got2431275107474818107474945Ratregion
1634204D5Wox391485116368606116368754Ratregion
1634628D5Got2411955100113215100113410Ratregion
2300293D5Rhw232115116292445116292656Ratregion
2315222D16Nkg703195108885691108885972Ratregion
7794805D5Mco412135117913475117913688Ratregion
7794807D5Mco422275116047089116047316Ratregion
7794818D5Mco472185112175328112175546Ratregion
7192368Elavl2665105963428105963494Ratregion
7365003rs6578575005101612333101612333Ratregion
7365007rs10513324505106874439106874439Ratregion
7206270Mysm16175109793011109793628Ratregion
5035863PMC25763P11555117367073117367228Ratregion
5035971PMC337033P12255105962737105962962Ratregion
5035971PMC337033P12255105962737105963351Ratregion
5035971PMC337033P12255105962787105962962Ratregion
5036097UniSTS:1412181755102623667102623851Ratregion
7206256Olfm1845113761244113761328Ratregion
7206572UniSTS:54709010355117934873117935908Ratregion
5036380Jun4265109896604109897030Ratregion
5039140RH1275351875103766729103766916Ratregion
5036653AU0487272315111945494111945729Ratregion
5031294PMC129043P12915109897364109897655Ratregion
5033877RH1404521655101169318101169483Ratregion
5028681RH80440895112513923112514012Ratregion
5031478AU0481911105100713273100713383Ratregion
5026198RH1312932145113710616113710834Ratregion
5034289RH1420791995113362916113363115Ratregion
5028927RH1428512445113046670113046914Ratregion
5029021RH1432161085113364282113364390Ratregion
5031720AU0473711035101621882101621985Ratregion
5031802AU0470991945114075177114075371Ratregion
5029379RH1445711595112416310112416469Ratregion
5032109RH94433975103020870103020967Ratregion
5032361AI12049013159982813699828474Ratregion
5032361AI12049013159982834399828474Ratregion
5035154AI0102541725115637807115637978Ratregion
5027073D1S34192605112776883112777140Ratregion
5029643BF3865221515113597258113597409Ratregion
5029665BF3867891955114594795114594990Ratregion
5029705BI2902611225110218661110219469Ratregion
5035338BM3864221555102106356102106511Ratregion
5035410AI0076031925101505317101505509Ratregion
5029783BF3872631735117757387117757560Ratregion
5030205BF40179619259933570999335901Ratregion
502786315.MMHAP53FRE9.seq2095101174343101174552Ratregion
5025424RH1282621915102623675102623875Ratregion
502793135.MMHAP28FLD5.seq1815109001682109001863Ratregion
5028029MHAa43g3.seq1055109077085109077190Ratregion
5030587BE1135502105117954990117955200Ratregion
5030775AW5351851535104009899104010052Ratregion
5030817BE1203321555115420521115420676Ratregion
5033567RH1392971715102402584102402755Ratregion
5028241D4Mit1541445111410443111410587Ratregion
5028243D4Mit1651825105829143105829325Ratregion
5033769RH1400532195101169322101169541Ratregion
5056733RH1445481865118915722118915908Ratregion
5056839RH1446102065102284069102284275Ratregion
5056903RH1446471545114927739114927893Ratregion
5052043RH948071405116403395116403535Ratregion
5057098D5Lev121055109721675109721780Ratregion
5057404AA9631301995112781625112781824Ratregion
5055315RH1437301525112570624112570776Ratregion
5057710BF3860541795117719059117719238Ratregion
5057944BF3863831995113615563113615761Ratregion
5058580BI2908941185114468360114468478Ratregion
5058758BF3936151735116262749116262922Ratregion
5058798BE1024651605116281103116281263Ratregion
5058958BE1026141775112428800112428977Ratregion
5052997RH1423941805113598233113598414Ratregion
5059972BF3882681865117877303117877489Ratregion
505217916.MHAa96b4.seq1545105677047105677201Ratregion
505219322.MMHAP70FRH7.seq1485117266911117267059Ratregion
5059062BI2783692145103917355103917568Ratregion
5053447RH1426542545101125772101126026Ratregion
5050786RH1342571955112337803112337996Ratregion
5050832RH1342842115117757931117758142Ratregion
5050888RH1343161845116098765116098949Ratregion
5052825RH1422952005114627194114627782Ratregion
5052915RH1423471885109894384109894576Ratregion
5054437RH1432231305117734304117734434Ratregion
5054731RH1433931505115964001115964151Ratregion
5041158RH1286952125115780301115780513Ratregion
5041904RH1291261825116301426116301929Ratregion
5044270RH1305062105113401660113401870Ratregion
5044706RH1307571905114217691114217882Ratregion
5046348RH1317011845116853426116853610Ratregion
5047482RH1323532135102224612102224827Ratregion
5047530RH1323801855117661068117661253Ratregion
5047538RH1323851895111220079111220268Ratregion
5045572RH1312552035101375192101375395Ratregion
5047704RH1324801975102886291102886488Ratregion
5045648RH1312982185117933814117934032Ratregion
5049146RH1333121805117368708117368888Ratregion
5046908RH1320242205117938565117938785Ratregion
5048222RH1327782175102889671102889888Ratregion
5047142RH1321571875113020904113021091Ratregion
5047350RH1322761985117927238117927436Ratregion
5047350RH1322761985117927238117927436Ratregion
5048344RH1328492085115767778115767986Ratregion
5048372RH1328652125110960568110960780Ratregion
5042318RH1293652165101442257101442473Ratregion
5042444RH1294372085109913907109914116Ratregion
5042462RH1294491885113703534113704516Ratregion
5049608RH1335781825113977345113977527Ratregion
5042358RH1293881855115778575115778760Ratregion
5042388RH1294052045101498022101498226Ratregion
5042876RH1296971835113598647113598830Ratregion
5041180RH1287081995109563602109563801Ratregion
5075008RH1383461825117542119117542301Ratregion
5072184RH1367011305117748767117748897Ratregion
5075302RH1385162185109732963109733181Ratregion
5075366RH1385531205109666343109666463Ratregion
5075616RH1386972195117271304117271535Ratregion
5075698RH1387451925117644101117644293Ratregion
5074250RH1379081325117728810117728942Ratregion
5074418RH1380051645117153278117153442Ratregion
5075916RH1388711485115763615115763763Ratregion
5076520RH1392232415102501070102501311Ratregion
5076598RH13926921459932239099322604Ratregion
5076946RH1394701985118371614118372037Ratregion
5080712RH1417382095114654451114654660Ratregion
5076098RH1389781225117875950117876072Ratregion
5075550RH1386581965101369075101369271Ratregion
5075710RH1387521475118839751118839898Ratregion
5076478RH1391981605102262097102262257Ratregion
5079796RH1412082095109783368109783577Ratregion
5078068RH1401252005103920046103920246Ratregion
5078916RH1406262085116281778116281986Ratregion
5078600RH1404372095117734145117734354Ratregion
5072876RH1371052015101442267101442468Ratregion
5072908RH1371231805109733610109733790Ratregion
5073080RH1372251945116155236116155430Ratregion
5079352RH1409441815101114607101114788Ratregion
5071340RH1350261835110867751110867934Ratregion
5074070RH13780220859925580899256016Ratregion
5071200RH1349452085118136744118136951Ratregion
5074666RH1381481895117080708117080897Ratregion
5065040BF4055471595115575933115576092Ratregion
5067014AU0480162195114295504114295725Ratregion
5067534AU04768722459992333099923552Ratregion
5067706AU04758419659980089399801089Ratregion
5067706AU04758419659980093299801089Ratregion
5068230AU0472711755106940736106940911Ratregion
5068238AU0472662325111864527111864759Ratregion
5068536AU0470872665110570676110570941Ratregion
5060104AI0723721835109346692109346875Ratregion
5062258BE1064082015108230788108230989Ratregion
5062610BE1069441575113596852113597009Ratregion
5060324AW5314341825117726101117726283Ratregion
5063654BE1079192105100937532100937742Ratregion
5063724BF4047741805102581935102582115Ratregion
5065376AI5355202505116993789116994039Ratregion
5062412BF3978971355104422245104422380Ratregion
5063908BE1202161525117158884117159036Ratregion
5060756BF3890911615104410894104411055Ratregion
5062546BI2889681895112466595112466784Ratregion
5062790AW5344381645101118667101118831Ratregion
5061050AI1459521855111222023111222208Ratregion
5063096BE1071211545112781235112781389Ratregion
5066330PMC152658P33485109894800109895148Ratregion
5061504BE1119052085102326902102327110Ratregion
5063176BE1138492115101543131101543342Ratregion
5063226BE1073781665113599438113599604Ratregion
5061656BF3969991475114332400114332547Ratregion
5086907BE1074621625113385860113386022Ratregion
5086979AI2364572015115963802115964002Ratregion
5086991BE1068091635103627756103627919Ratregion
5082077BF4159481925101704072101704264Ratregion
5087516PMC26775P15865103021015103021601Ratregion
5082611BE1198481785118959100118959278Ratregion
5086445BE1063121555115636886115637041Ratregion
5087953Elavl41595105962376105962535Ratregion
5089327AU0490902825117790595117790875Ratregion
5088727AU0487432855119085674119085952Ratregion
5089617AU0492611405106205635106205775Ratregion
5090119AU0495612185104876010104876230Ratregion
5085012AI0095531155112230744112230859Ratregion
5082357BE1192431825103893165103893330Ratregion
5088469AU0485881695115621390115621559Ratregion
5088597AU0486641995107732054107732259Ratregion
5085096BQ7803041935117787718117787911Ratregion
5090323AU0496832035101194455101194502Ratregion
5090499AU0497861355113246624113246759Ratregion
5081246RH1420501875109787740109788718Ratregion
5081284RH1420722095101439761101439970Ratregion
5085916BM3851611545109948870109949024Ratregion
5085922BM3851741565112414467112414623Ratregion
5084616AA8507361905109428866109429056Ratregion
5082837BF3902131515117729730117729881Ratregion
5082925BF3904201505117327502117327652Ratregion
5084018AI2324231105109497180109497290Ratregion
5084024AI4075721155109894371109894486Ratregion
5503958UniSTS:2569462675109895884109896151Ratregion
5503680ELAVL2__75779485105962550105963498Ratregion
5503845Nmt12795103658564103658845Ratregion
5504010px-21e121355106315971106316106Ratregion
5504626PMC316663P32395104015134104015373Ratregion
5504336D11S27838205107370493107371313Ratregion
5504859ha253105114606869114607662Ratregion
5506246UniSTS:50244205117970947117971573Ratregion
5506234Ndufs21215118333343118333464Ratregion
5506873G4707122259981947399819695Ratregion
5499843UniSTS:2349692875113335953113336240Ratregion
5499845UniSTS:2349673385113385613113385951Ratregion
5500515RH135495975113703231113703328Ratregion
5501179PMC152255P11485103991982103992130Ratregion
5501205PMC153970P11565109895405109895561Ratregion
5504698PMC55707P110055109895405109896410Ratregion
5505275Elavl24705105962786105963428Ratregion
5505275Elavl24705105962958105963428Ratregion
5506509AL0093641495113751250113751399Ratregion
5502311RH1243872305101369255101369485Ratregion
5502355RH1245661025117703291117703393Ratregion
Position Markers

Flank 1: (D5Rat80)
Rat AssemblyChrPosition (strand)Source
RH 3.4 Map5725.61UniSTS
RH 3.4 Map5725.61RGD
RH 2.0 Map5598.8RGD
SHRSP x BN Map553.6699RGD
Peak: (D5Wox25)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25109,050,865 - 109,051,012 (+)MAPPER
Rnor_6.05113,175,505 - 113,175,651NCBI
Rnor_5.05117,118,034 - 117,118,180UniSTS
RGSC_v3.45114,478,132 - 114,478,279RGD
RGSC_v3.45114,478,133 - 114,478,279UniSTS
RGSC_v3.15114,483,359 - 114,483,505RGD
Celera5107,687,340 - 107,687,496UniSTS
RH 3.4 Map5777.5RGD
RH 3.4 Map5777.5UniSTS
Flank 2: (D5Rat158)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25119,085,612 - 119,085,810 (+)MAPPER
Rnor_6.05123,852,489 - 123,852,688NCBI
Rnor_5.05127,710,120 - 127,710,319UniSTS
RGSC_v3.45125,254,995 - 125,255,195RGD
RGSC_v3.45125,254,996 - 125,255,195UniSTS
RGSC_v3.15125,260,177 - 125,260,686RGD
Celera5117,647,838 - 117,648,037UniSTS
SHRSP x BN Map563.8099RGD
SHRSP x BN Map563.8099UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)599016066119085810Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
7794743Bp373Blood pressure QTL 3730.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5112175546116047089Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
7794739Bp372Blood pressure QTL 3720.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5117913688125222967Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)599753548113061097Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
1600362Mcs19Mammary carcinoma susceptibility QTL 192.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)599485997103690167Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general rats were on a high sucrose diet (HSD; 70% calories as sucrose) for 1 week; while still on sucrose diet, dexamethasone (DEX) was given in drinking water (0.026mg/ml) for 3 days then these animals were killed and the liver weighed 1580752
qtl_statistics_details specific pairs of variables were compared by one or two way ANOVA with post hoc Tukey's honest significance difference test 1580752