PATJ (PATJ crumbs cell polarity complex component) - Rat Genome Database

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Gene: PATJ (PATJ crumbs cell polarity complex component) Chlorocebus sabaeus
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Symbol: PATJ
Name: PATJ crumbs cell polarity complex component
RGD ID: 18650061
Description: INVOLVED IN establishment of apical/basal cell polarity (ortholog); microtubule organizing center organization (ortholog); positive regulation of epithelial cell migration (ortholog); ASSOCIATED WITH congenital disorder of glycosylation It (ortholog); intellectual disability (ortholog); Prostatic Neoplasms (ortholog); FOUND IN apical part of cell (ortholog); perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inaD-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12070,910,594 - 71,300,877 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2070,910,447 - 71,301,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
PATJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12070,910,594 - 71,300,877 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2070,910,447 - 71,301,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
PATJ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,742,480 - 62,163,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,742,477 - 62,178,675 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,208,152 - 62,629,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,980,737 - 62,402,180 (+)NCBINCBI36Build 36hg18NCBI36
Celera160,496,772 - 60,918,615 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef160,320,895 - 60,742,543 (+)NCBIHuRef
CHM1_1162,323,629 - 62,744,942 (+)NCBICHM1_1
T2T-CHM13v2.0161,621,342 - 62,042,561 (+)NCBIT2T-CHM13v2.0
Patj
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39498,283,803 - 98,607,840 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl498,284,022 - 98,607,840 (+)EnsemblGRCm39 Ensembl
GRCm38498,395,560 - 98,719,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl498,395,785 - 98,719,603 (+)EnsemblGRCm38mm10GRCm38
MGSCv37498,062,517 - 98,386,294 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36497,887,844 - 98,211,621 (+)NCBIMGSCv36mm8
Celera496,759,588 - 97,075,177 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map445.6NCBI
Patj
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85118,177,557 - 118,480,301 (+)NCBIGRCr8
mRatBN7.25113,061,985 - 113,364,807 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5113,062,118 - 113,364,807 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5115,640,473 - 115,944,504 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05117,365,825 - 117,669,843 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05117,428,349 - 117,732,383 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05117,038,548 - 117,340,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5117,052,260 - 117,340,336 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05120,981,525 - 121,281,044 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45118,806,744 - 119,131,114 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5111,633,199 - 111,931,738 (+)NCBICelera
Cytogenetic Map5q33NCBI
Patj
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542327,409,623 - 27,629,731 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542327,408,334 - 27,637,065 (-)NCBIChiLan1.0ChiLan1.0
PATJ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21164,694,360 - 165,117,105 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,844,049 - 164,266,301 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0160,993,316 - 61,416,043 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,832,424 - 63,233,073 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,832,424 - 63,247,074 (+)Ensemblpanpan1.1panPan2
PATJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1547,913,433 - 48,268,043 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl547,914,284 - 48,256,861 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha547,973,462 - 48,335,754 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0548,097,120 - 48,453,049 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl548,097,122 - 48,452,964 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1548,051,707 - 48,405,688 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0547,998,363 - 48,352,502 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0548,260,886 - 48,617,091 (-)NCBIUU_Cfam_GSD_1.0
Patj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505875,084,131 - 75,401,322 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493652225,143 - 332,126 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493652215,136 - 233,484 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PATJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6150,245,497 - 150,605,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16150,248,714 - 150,605,565 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26138,472,898 - 138,557,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Patj
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474231,550,498 - 31,719,424 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474231,510,784 - 31,725,256 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000017197   ⟹   ENSCSAP00000016681
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2070,910,447 - 71,301,424 (-)Ensembl
RefSeq Acc Id: XM_038000705   ⟹   XP_037856633
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBI
RefSeq Acc Id: XM_038000710   ⟹   XP_037856638
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBI
RefSeq Acc Id: XM_038000713   ⟹   XP_037856641
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBI
RefSeq Acc Id: XM_038000715   ⟹   XP_037856643
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBI
RefSeq Acc Id: XM_038000716   ⟹   XP_037856644
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBI
RefSeq Acc Id: XM_038000719   ⟹   XP_037856647
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBI
Ensembl Acc Id: ENSCSAP00000016681   ⟸   ENSCSAT00000017197
RefSeq Acc Id: XP_037856641   ⟸   XM_038000713
- Peptide Label: isoform X3
- UniProtKB: A0A0D9S742 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856633   ⟸   XM_038000705
- Peptide Label: isoform X1
- UniProtKB: A0A0D9S742 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856644   ⟸   XM_038000716
- Peptide Label: isoform X5
- UniProtKB: A0A0D9S742 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856638   ⟸   XM_038000710
- Peptide Label: isoform X2
- UniProtKB: A0A0D9S742 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856643   ⟸   XM_038000715
- Peptide Label: isoform X4
- UniProtKB: A0A0D9S742 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856647   ⟸   XM_038000719
- Peptide Label: isoform X6
- UniProtKB: A0A0D9S742 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001336 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017197.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.360 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
InterPro L27_2 UniProtKB/TrEMBL
  L27_dom UniProtKB/TrEMBL
  L27_dom_sf UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_scaffold UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene PATJ ENTREZGENE
PANTHER MULTIPLE PDZ DOMAIN PROTEIN UniProtKB/TrEMBL
  PATJ HOMOLOG UniProtKB/TrEMBL
Pfam L27_2 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PROSITE L27 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART L27 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP SSF101288 UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt A0A0D9S742 ENTREZGENE, UniProtKB/TrEMBL