Patj (PATJ, crumbs cell polarity complex component) - Rat Genome Database

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Gene: Patj (PATJ, crumbs cell polarity complex component) Mus musculus
Analyze
Symbol: Patj
Name: PATJ, crumbs cell polarity complex component
RGD ID: 1558483
MGI Page MGI
Description: Predicted to be involved in establishment of apical/basal cell polarity and tight junction assembly. Part of subapical complex. Is active in apical part of cell. Is expressed in several structures, including early conceptus and eye. Orthologous to human PATJ (PATJ crumbs cell polarity complex component).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C; channel-interacting PDZ domain protein; channel-interacting PDZ domain-containing protein; Cipp; I; inactivation no after-potential D-like protein; InaD-like; InaD-like (Drosophila); Inadl; MGC176366; novel ankyrin-repeat protein; PALS1-associated tight junction protein; protein associated to tight junctions; RP23-291M22.2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39498,283,803 - 98,607,840 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl498,284,022 - 98,607,840 (+)EnsemblGRCm39 Ensembl
GRCm38498,395,560 - 98,719,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl498,395,785 - 98,719,603 (+)EnsemblGRCm38mm10GRCm38
MGSCv37498,062,517 - 98,386,294 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36497,887,844 - 98,211,621 (+)NCBIMGSCv36mm8
Celera496,759,588 - 97,075,177 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map445.6NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (EXP)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrolein  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitriptyline  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
Ampullosporin  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
atrazine  (ISO)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
Brodifacoum  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
corosolic acid  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP)
dibenzo[a,l]pyrene  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
finasteride  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (ISO)
ketamine  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
morphine  (EXP)
Muraglitazar  (ISO)
N-methyl-N-nitrosourea  (EXP)
nicotine  (EXP)
Nor-9-carboxy-delta9-THC  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (EXP)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium dichromate  (ISO)
Tesaglitazar  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. The hyh mutation uncovers roles for alpha Snap in apical protein localization and control of neural cell fate. Chae TH, etal., Nat Genet 2004 Mar;36(3):264-70. Epub 2004 Feb 1.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:9647694   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:11872753   PMID:12403818   PMID:12477932  
PMID:12520002   PMID:14610273   PMID:14988405   PMID:15489334   PMID:15863617   PMID:16141072   PMID:16141073   PMID:16602821   PMID:16885194   PMID:17397395   PMID:17452640   PMID:18403412  
PMID:18824598   PMID:19138174   PMID:19255144   PMID:20399730   PMID:21145499   PMID:21873635   PMID:22398208   PMID:23001562   PMID:23658188   PMID:24164893   PMID:25371366   PMID:25636444  
PMID:25742799   PMID:27870829   PMID:29155075   PMID:36932261   PMID:37318097   PMID:38355793  


Genomics

Comparative Map Data
Patj
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39498,283,803 - 98,607,840 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl498,284,022 - 98,607,840 (+)EnsemblGRCm39 Ensembl
GRCm38498,395,560 - 98,719,603 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl498,395,785 - 98,719,603 (+)EnsemblGRCm38mm10GRCm38
MGSCv37498,062,517 - 98,386,294 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36497,887,844 - 98,211,621 (+)NCBIMGSCv36mm8
Celera496,759,588 - 97,075,177 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map445.6NCBI
PATJ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,742,480 - 62,163,915 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,742,477 - 62,178,675 (+)EnsemblGRCh38hg38GRCh38
GRCh37162,208,152 - 62,629,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,980,737 - 62,402,180 (+)NCBINCBI36Build 36hg18NCBI36
Celera160,496,772 - 60,918,615 (+)NCBICelera
Cytogenetic Map1p31.3NCBI
HuRef160,320,895 - 60,742,543 (+)NCBIHuRef
CHM1_1162,323,629 - 62,744,942 (+)NCBICHM1_1
T2T-CHM13v2.0161,621,342 - 62,042,561 (+)NCBIT2T-CHM13v2.0
Patj
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85118,177,557 - 118,480,301 (+)NCBIGRCr8
mRatBN7.25113,061,985 - 113,364,807 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5113,062,118 - 113,364,807 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5115,640,473 - 115,944,504 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05117,365,825 - 117,669,843 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05117,428,349 - 117,732,383 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05117,038,548 - 117,340,308 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5117,052,260 - 117,340,336 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05120,981,525 - 121,281,044 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45118,806,744 - 119,131,114 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5111,633,199 - 111,931,738 (+)NCBICelera
Cytogenetic Map5q33NCBI
Patj
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542327,409,623 - 27,629,731 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542327,408,334 - 27,637,065 (-)NCBIChiLan1.0ChiLan1.0
PATJ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21164,694,360 - 165,117,105 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11163,844,049 - 164,266,301 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0160,993,316 - 61,416,043 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,832,424 - 63,233,073 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,832,424 - 63,247,074 (+)Ensemblpanpan1.1panPan2
PATJ
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1547,913,433 - 48,268,043 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl547,914,284 - 48,256,861 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha547,973,462 - 48,335,754 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0548,097,120 - 48,453,049 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl548,097,122 - 48,452,964 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1548,051,707 - 48,405,688 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0547,998,363 - 48,352,502 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0548,260,886 - 48,617,091 (-)NCBIUU_Cfam_GSD_1.0
Patj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505875,084,131 - 75,401,322 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493652225,143 - 332,126 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493652215,136 - 233,484 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PATJ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6150,245,497 - 150,605,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16150,248,714 - 150,605,565 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26138,472,898 - 138,557,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PATJ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12070,910,594 - 71,300,877 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2070,910,447 - 71,301,424 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603346,104,468 - 46,515,476 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Patj
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474231,550,498 - 31,719,424 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474231,510,784 - 31,725,256 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2385
Count of miRNA genes:776
Interacting mature miRNAs:1037
Transcripts:ENSMUST00000030290, ENSMUST00000041284, ENSMUST00000102792, ENSMUST00000107029, ENSMUST00000107030, ENSMUST00000107033, ENSMUST00000107034, ENSMUST00000134901, ENSMUST00000135606, ENSMUST00000136675, ENSMUST00000141796, ENSMUST00000141965, ENSMUST00000142103
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13824979Epid1_mepididymis and vas deferens weight 1 (mouse)48988823799857197Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
14696687Gdq1_mgrooming duration QTL 1, males (mouse)496888237111857197Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
27226760Feml19_mfemur length 19, 16 week (mouse)490888237108457197Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487518237103257197Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)484918237107157197Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485118237104957197Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487518237107157197Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse

Markers in Region
AW743107  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38498,706,021 - 98,706,284UniSTSGRCm38
MGSCv37498,372,712 - 98,372,975UniSTSGRCm37
Celera497,062,713 - 97,062,976UniSTS
Cytogenetic Map4C6UniSTS
Whitehead/MRC_RH41383.66UniSTS
38.MMHAP42FLE5.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38498,683,842 - 98,684,022UniSTSGRCm38
MGSCv37498,350,533 - 98,350,713UniSTSGRCm37
Celera497,040,482 - 97,040,662UniSTS
Cytogenetic Map4C6UniSTS
Whitehead_YAC4 UniSTS
D4Mit246  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38498,707,711 - 98,707,806UniSTSGRCm38
MGSCv37498,374,402 - 98,374,497UniSTSGRCm37
Celera497,064,403 - 97,064,494UniSTS
Cytogenetic Map4C6UniSTS
cM Map448.5UniSTS
Whitehead Genetic445.9UniSTS
Whitehead_YAC4 UniSTS
AF060539  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38498,718,886 - 98,719,020UniSTSGRCm38
MGSCv37498,385,577 - 98,385,711UniSTSGRCm37
Celera497,074,460 - 97,074,594UniSTS
Cytogenetic Map4C6UniSTS
Whitehead/MRC_RH41360.58UniSTS
UniSTS:234969  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38498,677,219 - 98,677,488UniSTSGRCm38
MGSCv37498,343,910 - 98,344,179UniSTSGRCm37
Celera497,033,804 - 97,034,073UniSTS
Cytogenetic Map4C6UniSTS
px-50g7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map7B5UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map3B-DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map4C1UniSTS
Cytogenetic Map18CUniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map2F2UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map4D2.2UniSTS
cM Map74.0UniSTS
cM Map1718.88UniSTS
cM Map241.25UniSTS
cM Map727.0UniSTS
cM Map342.1UniSTS
cM Map275.0UniSTS
cM Map153.6UniSTS
cM Map91.0UniSTS
d5rat25  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38498,394,659 - 98,394,825UniSTSGRCm38
MGSCv37498,061,350 - 98,061,516UniSTSGRCm37
Celera496,758,422 - 96,758,588UniSTS
Cytogenetic Map4C6UniSTS
D4Mit28  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38498,657,302 - 98,657,442UniSTSGRCm38
MGSCv37498,323,993 - 98,324,133UniSTSGRCm37
Celera497,013,882 - 97,014,024UniSTS
Cytogenetic Map4C6UniSTS
cM Map448.5UniSTS
Whitehead Genetic445.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001005784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001005787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF060539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL671229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV287690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB617492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC062194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM900173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU851730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY105808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD547724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK340630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030290   ⟹   ENSMUSP00000030290
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,435,210 - 98,577,248 (+)Ensembl
GRCm38.p6 Ensembl498,546,973 - 98,689,011 (+)Ensembl
Ensembl Acc Id: ENSMUST00000041284   ⟹   ENSMUSP00000049176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,284,028 - 98,607,840 (+)Ensembl
GRCm38.p6 Ensembl498,395,791 - 98,719,603 (+)Ensembl
Ensembl Acc Id: ENSMUST00000102792   ⟹   ENSMUSP00000099854
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,434,971 - 98,607,840 (+)Ensembl
GRCm38.p6 Ensembl498,546,734 - 98,719,603 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107029   ⟹   ENSMUSP00000102644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,338,807 - 98,606,595 (+)Ensembl
GRCm38.p6 Ensembl498,450,570 - 98,718,358 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107030   ⟹   ENSMUSP00000102645
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,284,129 - 98,342,944 (+)Ensembl
GRCm38.p6 Ensembl498,395,892 - 98,454,707 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107033   ⟹   ENSMUSP00000102648
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,284,092 - 98,442,889 (+)Ensembl
GRCm38.p6 Ensembl498,395,855 - 98,554,652 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107034   ⟹   ENSMUSP00000102649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,284,092 - 98,562,727 (+)Ensembl
GRCm38.p6 Ensembl498,395,855 - 98,674,490 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134901   ⟹   ENSMUSP00000115936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,407,208 - 98,427,440 (+)Ensembl
GRCm38.p6 Ensembl498,518,971 - 98,539,203 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135606
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,383,293 - 98,396,431 (+)Ensembl
GRCm38.p6 Ensembl498,495,056 - 98,508,194 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,304,836 - 98,320,111 (+)Ensembl
GRCm38.p6 Ensembl498,416,599 - 98,431,874 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141796
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,284,022 - 98,293,914 (+)Ensembl
GRCm38.p6 Ensembl498,395,785 - 98,405,677 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,325,180 - 98,329,374 (+)Ensembl
GRCm38.p6 Ensembl498,436,943 - 98,441,137 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142103   ⟹   ENSMUSP00000116021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,329,313 - 98,385,870 (+)Ensembl
GRCm38.p6 Ensembl498,441,076 - 98,497,633 (+)Ensembl
Ensembl Acc Id: ENSMUST00000238306   ⟹   ENSMUSP00000158719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl498,284,028 - 98,607,840 (+)Ensembl
GRCm38.p6 Ensembl498,395,791 - 98,719,603 (+)Ensembl
RefSeq Acc Id: NM_001005784   ⟹   NP_001005784
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,284,063 - 98,385,870 (+)NCBI
GRCm38498,395,826 - 98,497,633 (+)NCBI
MGSCv37498,062,517 - 98,386,294 (+)RGD
Celera496,759,588 - 97,075,177 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001005787   ⟹   NP_001005787
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,434,871 - 98,577,248 (+)NCBI
GRCm38498,546,634 - 98,689,011 (+)NCBI
MGSCv37498,062,517 - 98,386,294 (+)RGD
Celera496,759,588 - 97,075,177 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355177   ⟹   NP_001342106
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,299,264 - 98,607,840 (+)NCBI
GRCm38498,411,027 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007704   ⟹   NP_031730
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,434,871 - 98,607,840 (+)NCBI
GRCm38498,546,634 - 98,719,603 (+)NCBI
MGSCv37498,062,517 - 98,386,294 (+)RGD
Celera496,759,588 - 97,075,177 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172696   ⟹   NP_766284
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,284,063 - 98,607,840 (+)NCBI
GRCm38498,395,826 - 98,719,603 (+)NCBI
MGSCv37498,062,517 - 98,386,294 (+)RGD
Celera496,759,588 - 97,075,177 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502699   ⟹   XP_006502762
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,283,804 - 98,607,840 (+)NCBI
GRCm38498,395,572 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502700   ⟹   XP_006502763
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,283,804 - 98,607,840 (+)NCBI
GRCm38498,395,572 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502701   ⟹   XP_006502764
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,284,712 - 98,607,840 (+)NCBI
GRCm38498,396,475 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502702   ⟹   XP_006502765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,283,817 - 98,607,840 (+)NCBI
GRCm38498,395,584 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502703   ⟹   XP_006502766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,283,817 - 98,607,840 (+)NCBI
GRCm38498,395,584 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502704   ⟹   XP_006502767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,283,803 - 98,607,840 (+)NCBI
GRCm38498,395,571 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502705   ⟹   XP_006502768
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,283,804 - 98,607,840 (+)NCBI
GRCm38498,395,572 - 98,719,603 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006502707   ⟹   XP_006502770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39498,437,831 - 98,607,840 (+)NCBI
GRCm38498,549,593 - 98,719,603 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001005784 (Get FASTA)   NCBI Sequence Viewer  
  NP_001005787 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342106 (Get FASTA)   NCBI Sequence Viewer  
  NP_031730 (Get FASTA)   NCBI Sequence Viewer  
  NP_766284 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502762 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502763 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502764 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502765 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502766 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502767 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502768 (Get FASTA)   NCBI Sequence Viewer  
  XP_006502770 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC40148 (Get FASTA)   NCBI Sequence Viewer  
  AAH37607 (Get FASTA)   NCBI Sequence Viewer  
  AAH50846 (Get FASTA)   NCBI Sequence Viewer  
  AAH57124 (Get FASTA)   NCBI Sequence Viewer  
  AAH62194 (Get FASTA)   NCBI Sequence Viewer  
  AAH82787 (Get FASTA)   NCBI Sequence Viewer  
  AAI41405 (Get FASTA)   NCBI Sequence Viewer  
  BAC36720 (Get FASTA)   NCBI Sequence Viewer  
  BAE22794 (Get FASTA)   NCBI Sequence Viewer  
  BAE28189 (Get FASTA)   NCBI Sequence Viewer  
  BAE32113 (Get FASTA)   NCBI Sequence Viewer  
  BAE33609 (Get FASTA)   NCBI Sequence Viewer  
  EDL30901 (Get FASTA)   NCBI Sequence Viewer  
  EDL30902 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000030290
  ENSMUSP00000030290.8
  ENSMUSP00000049176
  ENSMUSP00000049176.4
  ENSMUSP00000099854
  ENSMUSP00000099854.4
  ENSMUSP00000102644.2
  ENSMUSP00000102645.3
  ENSMUSP00000102648.2
  ENSMUSP00000102649
  ENSMUSP00000102649.2
  ENSMUSP00000115936.2
  ENSMUSP00000116021.2
  ENSMUSP00000158719.2
GenBank Protein Q63ZW7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031730   ⟸   NM_007704
- Peptide Label: isoform 3
- UniProtKB: Q63ZW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001005787   ⟸   NM_001005787
- Peptide Label: isoform 4
- UniProtKB: Q63ZW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_766284   ⟸   NM_172696
- Peptide Label: isoform 1
- UniProtKB: Q80YR8 (UniProtKB/Swiss-Prot),   Q6P6J1 (UniProtKB/Swiss-Prot),   Q5PRG3 (UniProtKB/Swiss-Prot),   O70471 (UniProtKB/Swiss-Prot),   A2ADS7 (UniProtKB/Swiss-Prot),   Q8BPB9 (UniProtKB/Swiss-Prot),   Q63ZW7 (UniProtKB/Swiss-Prot),   A2ADL9 (UniProtKB/TrEMBL),   A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001005784   ⟸   NM_001005784
- Peptide Label: isoform 2
- UniProtKB: Q63ZW7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502768   ⟸   XM_006502705
- Peptide Label: isoform X4
- UniProtKB: A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502767   ⟸   XM_006502704
- Peptide Label: isoform X3
- UniProtKB: A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502765   ⟸   XM_006502702
- Peptide Label: isoform X2
- UniProtKB: A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502762   ⟸   XM_006502699
- Peptide Label: isoform X1
- UniProtKB: Q80YR8 (UniProtKB/Swiss-Prot),   Q6P6J1 (UniProtKB/Swiss-Prot),   Q5PRG3 (UniProtKB/Swiss-Prot),   O70471 (UniProtKB/Swiss-Prot),   A2ADS7 (UniProtKB/Swiss-Prot),   Q8BPB9 (UniProtKB/Swiss-Prot),   Q63ZW7 (UniProtKB/Swiss-Prot),   A2ADL9 (UniProtKB/TrEMBL),   A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502766   ⟸   XM_006502703
- Peptide Label: isoform X2
- UniProtKB: A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502763   ⟸   XM_006502700
- Peptide Label: isoform X1
- UniProtKB: Q80YR8 (UniProtKB/Swiss-Prot),   Q6P6J1 (UniProtKB/Swiss-Prot),   Q5PRG3 (UniProtKB/Swiss-Prot),   O70471 (UniProtKB/Swiss-Prot),   A2ADS7 (UniProtKB/Swiss-Prot),   Q8BPB9 (UniProtKB/Swiss-Prot),   Q63ZW7 (UniProtKB/Swiss-Prot),   A2ADL9 (UniProtKB/TrEMBL),   A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502764   ⟸   XM_006502701
- Peptide Label: isoform X1
- UniProtKB: Q80YR8 (UniProtKB/Swiss-Prot),   Q6P6J1 (UniProtKB/Swiss-Prot),   Q5PRG3 (UniProtKB/Swiss-Prot),   O70471 (UniProtKB/Swiss-Prot),   A2ADS7 (UniProtKB/Swiss-Prot),   Q8BPB9 (UniProtKB/Swiss-Prot),   Q63ZW7 (UniProtKB/Swiss-Prot),   A2ADL9 (UniProtKB/TrEMBL),   A0A571BEG7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006502770   ⟸   XM_006502707
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001342106   ⟸   NM_001355177
- Peptide Label: isoform 5
Ensembl Acc Id: ENSMUSP00000102645   ⟸   ENSMUST00000107030
Ensembl Acc Id: ENSMUSP00000102648   ⟸   ENSMUST00000107033
Ensembl Acc Id: ENSMUSP00000102649   ⟸   ENSMUST00000107034
Ensembl Acc Id: ENSMUSP00000102644   ⟸   ENSMUST00000107029
Ensembl Acc Id: ENSMUSP00000158719   ⟸   ENSMUST00000238306
Ensembl Acc Id: ENSMUSP00000115936   ⟸   ENSMUST00000134901
Ensembl Acc Id: ENSMUSP00000049176   ⟸   ENSMUST00000041284
Ensembl Acc Id: ENSMUSP00000116021   ⟸   ENSMUST00000142103
Ensembl Acc Id: ENSMUSP00000030290   ⟸   ENSMUST00000030290
Ensembl Acc Id: ENSMUSP00000099854   ⟸   ENSMUST00000102792
Protein Domains
L27   PDZ

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63ZW7-F1-model_v2 AlphaFold Q63ZW7 1-1834 view protein structure

Promoters
RGD ID:6835501
Promoter ID:MM_KWN:38568
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000097966,   ENSMUST00000107031,   ENSMUST00000107033,   ENSMUST00000107034,   ENSMUST00000107035,   NM_001005784,   OTTMUST00000019232,   OTTMUST00000019314,   OTTMUST00000019382
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36498,062,551 - 98,063,051 (+)MPROMDB
RGD ID:6835502
Promoter ID:MM_KWN:38570
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000019383,   UC008TUE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36498,103,336 - 98,103,836 (+)MPROMDB
RGD ID:6835500
Promoter ID:MM_KWN:38575
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_007704,   OTTMUST00000019313
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36498,213,456 - 98,213,956 (+)MPROMDB
RGD ID:6847817
Promoter ID:MM_ACW:35063
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:INADL.NSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36498,369,464 - 98,369,964 (+)MPROMDB
RGD ID:6883912
Promoter ID:EPDNEW_M5407
Type:initiation region
Name:Patj_1
Description:Mus musculus PATJ, crumbs cell polarity complex component , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5408  EPDNEW_M5409  EPDNEW_M5410  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38498,395,855 - 98,395,915EPDNEW
RGD ID:6883914
Promoter ID:EPDNEW_M5408
Type:initiation region
Name:Patj_3
Description:Mus musculus PATJ, crumbs cell polarity complex component , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5407  EPDNEW_M5409  EPDNEW_M5410  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38498,436,943 - 98,437,003EPDNEW
RGD ID:6883916
Promoter ID:EPDNEW_M5409
Type:multiple initiation site
Name:Patj_4
Description:Mus musculus PATJ, crumbs cell polarity complex component , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5407  EPDNEW_M5408  EPDNEW_M5410  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38498,437,335 - 98,437,395EPDNEW
RGD ID:6883918
Promoter ID:EPDNEW_M5410
Type:initiation region
Name:Patj_2
Description:Mus musculus PATJ, crumbs cell polarity complex component , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5407  EPDNEW_M5408  EPDNEW_M5409  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38498,546,730 - 98,546,790EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277960 AgrOrtholog
Ensembl Genes ENSMUSG00000061859 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030290 ENTREZGENE
  ENSMUST00000030290.8 UniProtKB/Swiss-Prot
  ENSMUST00000041284 ENTREZGENE
  ENSMUST00000041284.10 UniProtKB/Swiss-Prot
  ENSMUST00000102792 ENTREZGENE
  ENSMUST00000102792.10 UniProtKB/Swiss-Prot
  ENSMUST00000107029.8 UniProtKB/Swiss-Prot
  ENSMUST00000107030.9 UniProtKB/Swiss-Prot
  ENSMUST00000107033.8 UniProtKB/TrEMBL
  ENSMUST00000107034 ENTREZGENE
  ENSMUST00000107034.8 UniProtKB/TrEMBL
  ENSMUST00000134901.2 UniProtKB/TrEMBL
  ENSMUST00000142103.8 UniProtKB/TrEMBL
  ENSMUST00000238306.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.20.370.60 UniProtKB/TrEMBL
InterPro L27_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  L27_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_scaffold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Synaptic_Scaffolding_LAP-MAGUK UniProtKB/TrEMBL
KEGG Report mmu:12695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1277960 ENTREZGENE
NCBI Gene 12695 ENTREZGENE
PANTHER DISCS LARGE UniProtKB/TrEMBL
  DISKS LARGE 1 TUMOR SUPPRESSOR PROTEIN UniProtKB/TrEMBL
  INAD-LIKE PROTEIN UniProtKB/TrEMBL
  MULTIPLE PDZ DOMAIN PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PATJ HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam L27_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Patj PhenoGen
PROSITE L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART L27 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101288 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A571BEG7 ENTREZGENE, UniProtKB/TrEMBL
  A2ADL9 ENTREZGENE, UniProtKB/TrEMBL
  A2ADS6_MOUSE UniProtKB/TrEMBL
  A2ADS7 ENTREZGENE
  A2ADS8_MOUSE UniProtKB/TrEMBL
  A2ADT1_MOUSE UniProtKB/TrEMBL
  F6RSZ8_MOUSE UniProtKB/TrEMBL
  INADL_MOUSE UniProtKB/Swiss-Prot
  O70471 ENTREZGENE
  Q3U191_MOUSE UniProtKB/TrEMBL
  Q3U5G6_MOUSE UniProtKB/TrEMBL
  Q3UGL9_MOUSE UniProtKB/TrEMBL
  Q3UWX0_MOUSE UniProtKB/TrEMBL
  Q5PRG3 ENTREZGENE
  Q63ZW7 ENTREZGENE
  Q6P6J1 ENTREZGENE
  Q80YR8 ENTREZGENE
  Q8BPB9 ENTREZGENE
UniProt Secondary A2ADS7 UniProtKB/Swiss-Prot
  O70471 UniProtKB/Swiss-Prot
  Q5PRG3 UniProtKB/Swiss-Prot
  Q6P6J1 UniProtKB/Swiss-Prot
  Q80YR8 UniProtKB/Swiss-Prot
  Q8BPB9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-09-13 Patj  PATJ, crumbs cell polarity complex component  Inadl  InaD-like (Drosophila)  Symbol and/or name change 5135510 APPROVED