Bmd7_m QTL Report (Mus musculus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Bmd7_m (bone mineral density 7 (mouse)) Mus musculus

Symbol: Bmd7_m
Name: bone mineral density 7 (mouse)
RGD ID: 1301823
Trait: Not determined
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm39488,982,069 - 151,654,550MOUSEQTLGRCm39
GRCm38489,063,832 - 151,570,093MOUSEQTLGRCm38
MGSCv37488,709,736 - 150,944,202 (+)MOUSEQTLGRCm37
MGSCv34104,190,535 - 140,190,535RGD
cM Map442.13MOUSEQTL
Cross Type: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



1 to 10 of 10 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Bmd7_mMouseincreased bone mineral density of femur  IAGP 5509061 MGIPMID:11450694
Bmd7_mMouseincreased bone mineral density of femur  IAGP 5509061 MGIPMID:12568393
Bmd7_mMouseincreased bone mineral density of vertebrae  IAGP 5509061 MGIPMID:11450694
Bmd7_mMouseincreased bone mineral density of vertebrae  IAGP 5509061 MGIPMID:12568393
Bmd7_mMouseincreased bone ossification  IAGP 5509061 MGIPMID:12490544
Bmd7_mMouseincreased bone strength  IAGP 5509061 MGIPMID:12490544
Bmd7_mMouseincreased bone strength  IAGP 5509061 MGIPMID:14667144
Bmd7_mMouseincreased femoral compact bone area  IAGP 5509061 MGIPMID:14667144
Bmd7_mMouselimbs/digits/tail phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:11450694
Bmd7_mMouseskeleton phenotype  IEA 704405Created by mouse qtl pipelineMGIPMID:11450694
1 to 10 of 10 rows

#
Reference Title
Reference Citation
1. Mouse Genome Database (MGD) Mouse Genome Database (MGD)
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
PMID:11450694  



1 to 20 of 2907 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
2294697Wincr1WNT induced non-coding RNA 148896854489002847Mouse
9663552Gm12602predicted gene 1260248901810489046463Mouse
401836935LOC132410112STARR-positive B cell enhancer ABC_E1024048904750889047808Mouse
1320831Mtapmethylthioadenosine phosphorylase48905560789099327Mouse
401834731LOC132410113STARR-positive B cell enhancer ABC_E618948906461789064918Mouse
401841476LOC132410114STARR-positive B cell enhancer ABC_E797448907624489076545Mouse
5147134Gm12607predicted gene 1260748907993989080455Mouse
14999975Gm26490predicted gene, 2649048910123089101357Mouse
2294823Tgif2-ps1TGFB-induced factor homeobox 2, pseudogene 148913494889136725Mouse
329964227LOC131339953STARR-seq mESC enhancer starr_1073648915186289153660Mouse
329962135LOC131339954STARR-seq mESC enhancer starr_1073748916202889163518Mouse
401832142LOC132410115STARR-positive B cell enhancer ABC_E164648919090289191203Mouse
10322Cdkn2acyclin dependent kinase inhibitor 2A48919271089212856Mouse
9662924Gm12610predicted gene 1261048921341789406858Mouse
731792Cdkn2bcyclin dependent kinase inhibitor 2B48922452689229269Mouse
329964295LOC131339955STARR-seq mESC enhancer starr_1073848922472789227334Mouse
401838887LOC132410116STARR-positive B cell enhancer ABC_E1124648922919089229490Mouse
329967309LOC131339956STARR-seq mESC enhancer starr_1073948923664589240152Mouse
329965700LOC131339957STARR-seq mESC enhancer starr_1074048924023089240440Mouse
39130818LOC109279851VISTA enhancer mm1048931464889317341Mouse

1 to 20 of 2907 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match

1 to 10 of 178 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13824979Epid1_mepididymis and vas deferens weight 1 (mouse)48988823799857197Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
25394567Skmw55_mskeletal muscle weight 55, gastroc (mouse)4131437804133710576Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse

1 to 10 of 178 rows


Database
Acc Id
Source(s)
MGD MGI:2389131

Note Type Note Reference