Serinc2 (serine incorporator 2) - Rat Genome Database

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Gene: Serinc2 (serine incorporator 2) Mus musculus
Analyze
Symbol: Serinc2
Name: serine incorporator 2
RGD ID: 1553721
MGI Page MGI
Description: Predicted to be involved in phosphatidylserine metabolic process; positive regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity; and positive regulation of serine C-palmitoyltransferase activity. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SERINC2 (serine incorporator 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310004K20Rik; AW121759; FKSG8; FKSG84; TDE2; Tde2l; tumor differentially expressed 2-like; tumor differentially expressed protein 2-like
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,147,289 - 130,172,993 (-)NCBIGRCm39mm39
GRCm39 Ensembl4130,147,288 - 130,172,998 (-)Ensembl
GRCm384130,253,495 - 130,279,218 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,253,495 - 130,279,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,930,741 - 129,952,830 (-)NCBIGRCm37mm9NCBIm37
MGSCv364129,755,801 - 129,777,857 (-)NCBImm8
Celera4128,586,340 - 128,608,383 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butan-1-ol  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chloropicrin  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
dichloroacetic acid  (EXP)
diuron  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
fulvestrant  (ISO)
furan  (ISO)
glycine betaine  (ISO)
indometacin  (ISO)
Muraglitazar  (ISO)
O-methyleugenol  (ISO)
orphenadrine  (ISO)
paracetamol  (ISO)
PCB138  (EXP)
pentachlorophenol  (EXP)
permethrin  (EXP)
Phenelzine  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
silicon dioxide  (ISO)
Soman  (ISO)
succimer  (EXP)
Tesaglitazar  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (ISO)
trichloroethene  (EXP)
triptonide  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Comparative Map Data
Serinc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394130,147,289 - 130,172,993 (-)NCBIGRCm39mm39
GRCm39 Ensembl4130,147,288 - 130,172,998 (-)Ensembl
GRCm384130,253,495 - 130,279,218 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4130,253,495 - 130,279,205 (-)EnsemblGRCm38mm10GRCm38
MGSCv374129,930,741 - 129,952,830 (-)NCBIGRCm37mm9NCBIm37
MGSCv364129,755,801 - 129,777,857 (-)NCBImm8
Celera4128,586,340 - 128,608,383 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
SERINC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38131,409,777 - 31,434,678 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl131,409,565 - 31,434,680 (+)EnsemblGRCh38hg38GRCh38
GRCh37131,882,624 - 31,907,525 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36131,658,550 - 31,680,112 (+)NCBINCBI36hg18NCBI36
Celera130,143,213 - 30,168,046 (+)NCBI
Cytogenetic Map1p35.2NCBI
HuRef129,989,453 - 30,017,892 (+)NCBIHuRef
CHM1_1131,998,320 - 32,023,476 (+)NCBICHM1_1
T2T-CHM13v2.0131,262,102 - 31,291,896 (+)NCBI
Serinc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25142,592,308 - 142,614,628 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl5142,592,309 - 142,618,364 (-)Ensembl
Rnor_6.05148,470,060 - 148,492,232 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5148,470,061 - 148,492,232 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05152,187,837 - 152,210,009 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45149,279,136 - 149,301,805 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15149,289,176 - 149,312,129 (-)NCBI
Celera5141,059,502 - 141,081,693 (-)NCBICelera
Cytogenetic Map5q36NCBI
Serinc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554529,892,657 - 9,915,018 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554529,905,152 - 9,914,943 (+)NCBIChiLan1.0ChiLan1.0
SERINC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1131,714,162 - 31,734,906 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl131,710,291 - 31,734,906 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0130,689,645 - 30,714,325 (+)NCBIMhudiblu_PPA_v0panPan3
SERINC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,600,349 - 69,618,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl269,600,360 - 69,620,946 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,179,079 - 66,196,727 (-)NCBI
ROS_Cfam_1.0270,164,791 - 70,182,451 (-)NCBI
ROS_Cfam_1.0 Ensembl270,164,797 - 70,185,345 (-)Ensembl
UMICH_Zoey_3.1267,000,805 - 67,018,460 (-)NCBI
UNSW_CanFamBas_1.0267,997,271 - 68,014,928 (-)NCBI
UU_Cfam_GSD_1.0268,996,787 - 69,014,444 (-)NCBI
Serinc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505848,796,095 - 48,814,379 (+)NCBI
SpeTri2.0NW_00493647414,622,980 - 14,639,159 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SERINC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl687,992,987 - 88,017,130 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1687,992,933 - 88,017,141 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2681,673,720 - 81,680,123 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SERINC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,401,526 - 101,423,852 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl20101,401,222 - 101,423,599 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603315,255,491 - 15,289,647 (+)NCBIVero_WHO_p1.0
Serinc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476414,741,902 - 14,766,936 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476414,744,347 - 14,763,423 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AW121759  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384130,253,541 - 130,253,643UniSTSGRCm38
MGSCv374129,930,785 - 129,930,887UniSTSGRCm37
Cytogenetic Map4D2.2UniSTS
Whitehead/MRC_RH41692.54UniSTS
D4Wehi20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384130,268,535 - 130,268,747UniSTSGRCm38
MGSCv374129,945,779 - 129,945,991UniSTSGRCm37
Celera4128,601,385 - 128,601,595UniSTS
Cytogenetic Map4D2.2UniSTS
MARC_26102-26103:1032794289:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384130,254,007 - 130,255,422UniSTSGRCm38
MGSCv374129,931,251 - 129,932,666UniSTSGRCm37
Celera4128,586,866 - 128,588,281UniSTS
Cytogenetic Map4D2.2UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129465811136864536Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
25394568Skmw56_mskeletal muscle weight 56, EDL (mouse)4129859344133710576Mouse
12904009Cfq9_mconditioned fear QTL 9 (mouse)4130036287133772722Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1174
Count of miRNA genes:501
Interacting mature miRNAs:605
Transcripts:ENSMUST00000105996, ENSMUST00000120126, ENSMUST00000122374, ENSMUST00000146478, ENSMUST00000154846
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001253386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001356465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA986627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE956082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG077215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU511121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB055666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU407307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000105996   ⟹   ENSMUSP00000101618
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4130,147,288 - 130,169,379 (-)Ensembl
GRCm38.p6 Ensembl4130,253,495 - 130,275,586 (-)Ensembl
RefSeq Acc Id: ENSMUST00000120126   ⟹   ENSMUSP00000113044
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4130,147,692 - 130,172,998 (-)Ensembl
GRCm38.p6 Ensembl4130,253,899 - 130,279,205 (-)Ensembl
RefSeq Acc Id: ENSMUST00000122374   ⟹   ENSMUSP00000112535
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4130,147,288 - 130,169,011 (-)Ensembl
GRCm38.p6 Ensembl4130,253,495 - 130,275,218 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146478   ⟹   ENSMUSP00000115198
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4130,156,821 - 130,169,325 (-)Ensembl
GRCm38.p6 Ensembl4130,263,028 - 130,275,532 (-)Ensembl
RefSeq Acc Id: ENSMUST00000154846   ⟹   ENSMUSP00000116586
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4130,157,436 - 130,169,338 (-)Ensembl
GRCm38.p6 Ensembl4130,263,643 - 130,275,545 (-)Ensembl
RefSeq Acc Id: NM_001253386   ⟹   NP_001240315
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,290 - 130,169,013 (-)NCBI
GRCm384130,253,497 - 130,275,220 (-)NCBI
Celera4128,586,340 - 128,608,383 (-)ENTREZGENE
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001356465   ⟹   NP_001343394
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,290 - 130,165,227 (-)NCBI
GRCm384130,253,497 - 130,271,434 (-)NCBI
Sequence:
RefSeq Acc Id: NM_172702   ⟹   NP_766290
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,290 - 130,169,379 (-)NCBI
GRCm384130,253,497 - 130,275,586 (-)NCBI
MGSCv374129,930,741 - 129,952,830 (-)RGD
Celera4128,586,340 - 128,608,383 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503063   ⟹   XP_006503126
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,289 - 130,172,993 (-)NCBI
GRCm384130,253,495 - 130,279,218 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006503064   ⟹   XP_006503127
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,289 - 130,169,385 (-)NCBI
GRCm384130,253,495 - 130,275,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006503065   ⟹   XP_006503128
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,290 - 130,169,338 (-)NCBI
GRCm384130,253,496 - 130,275,545 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253461   ⟹   XP_030109321
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,290 - 130,169,350 (-)NCBI
GRCm384130,253,495 - 130,275,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253462   ⟹   XP_030109322
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,290 - 130,169,349 (-)NCBI
GRCm384130,253,495 - 130,275,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253463   ⟹   XP_030109323
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,289 - 130,160,284 (-)NCBI
GRCm384130,253,495 - 130,266,492 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164063   ⟹   XP_036019956
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394130,147,289 - 130,169,531 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_766290   ⟸   NM_172702
- Peptide Label: isoform 1 precursor
- UniProtKB: Q8K0E7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001240315   ⟸   NM_001253386
- Peptide Label: isoform 2
- UniProtKB: B2KFY0 (UniProtKB/TrEMBL),   Q8C6D8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503126   ⟸   XM_006503063
- Peptide Label: isoform X1
- UniProtKB: E9Q7Q6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503128   ⟸   XM_006503065
- Peptide Label: isoform X2
- UniProtKB: B2KFY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503127   ⟸   XM_006503064
- Peptide Label: isoform X2
- UniProtKB: B2KFY0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109321   ⟸   XM_030253461
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109322   ⟸   XM_030253462
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030109323   ⟸   XM_030253463
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001343394   ⟸   NM_001356465
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000101618   ⟸   ENSMUST00000105996
RefSeq Acc Id: ENSMUSP00000115198   ⟸   ENSMUST00000146478
RefSeq Acc Id: ENSMUSP00000116586   ⟸   ENSMUST00000154846
RefSeq Acc Id: ENSMUSP00000113044   ⟸   ENSMUST00000120126
RefSeq Acc Id: ENSMUSP00000112535   ⟸   ENSMUST00000122374
RefSeq Acc Id: XP_036019956   ⟸   XM_036164063
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K0E7-F1-model_v2 AlphaFold Q8K0E7 1-450 view protein structure

Promoters
RGD ID:6884828
Promoter ID:EPDNEW_M5865
Type:multiple initiation site
Name:Serinc2_2
Description:Mus musculus serine incorporator 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5866  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384130,275,220 - 130,275,280EPDNEW
RGD ID:6884830
Promoter ID:EPDNEW_M5866
Type:initiation region
Name:Serinc2_1
Description:Mus musculus serine incorporator 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5865  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384130,275,554 - 130,275,614EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919132 AgrOrtholog
Ensembl Genes ENSMUSG00000023232 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000101618 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000112535 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000113044 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000115198 UniProtKB/TrEMBL
  ENSMUSP00000116586 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000105996 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000120126 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000122374 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000146478 UniProtKB/TrEMBL
  ENSMUST00000154846 UniProtKB/TrEMBL
InterPro SERINC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TDE1/TMS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:230779 UniProtKB/Swiss-Prot
MGD MGI:1919132 ENTREZGENE
NCBI Gene 230779 ENTREZGENE
PANTHER PTHR10383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10383:SF22 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Serinc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Serinc2 PhenoGen
UniProt B2KFY0 ENTREZGENE, UniProtKB/TrEMBL
  B2KFY1_MOUSE UniProtKB/TrEMBL
  B2KFY2_MOUSE UniProtKB/TrEMBL
  E9Q7Q6 ENTREZGENE, UniProtKB/TrEMBL
  Q8C6D8 ENTREZGENE, UniProtKB/TrEMBL
  Q8K0E7 ENTREZGENE, UniProtKB/Swiss-Prot