Srrm1 (serine/arginine repetitive matrix 1) - Rat Genome Database

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Gene: Srrm1 (serine/arginine repetitive matrix 1) Mus musculus
Analyze
Symbol: Srrm1
Name: serine/arginine repetitive matrix 1
RGD ID: 1322620
MGI Page MGI
Description: Predicted to enable DNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA splicing, via spliceosome. Part of spliceosomal complex. Is expressed in central nervous system; genitourinary system; pancreas epithelium; and sensory organ. Orthologous to human SRRM1 (serine and arginine repetitive matrix 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA407769; plenty-of-prolines 101; plenty-of-prolines-101; POP101; Ser/Arg-related nuclear matrix protein; serine/arginine repetitive matrix protein 1; SRm1; Srm160; Srm160-pending
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm12024   Gm18695   Gm18722  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394135,047,795 - 135,080,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4135,047,795 - 135,080,632 (-)EnsemblGRCm39 Ensembl
GRCm384135,320,484 - 135,353,277 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4135,320,484 - 135,353,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,876,399 - 134,909,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364134,594,109 - 134,625,212 (-)NCBIMGSCv36mm8
Celera4133,520,897 - 133,553,516 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. A preliminary investigation on placenta protein profile reveals only modest changes in well controlled gestational diabetes mellitus. Lapolla A, etal., Eur J Mass Spectrom (Chichester, Eng). 2013;19(3):211-23.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Large-scale identification of mammalian proteins localized to nuclear sub-compartments. Sutherland HG, etal., Hum Mol Genet 2001 Sep 1;10(18):1995-2011.
10. The ever-increasing complexities of the exon junction complex. Tange TO, etal., Curr Opin Cell Biol. 2004 Jun;16(3):279-84.
Additional References at PubMed
PMID:8889548   PMID:9531537   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15345747   PMID:15489334   PMID:15741177  
PMID:15782199   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17114649   PMID:18287559   PMID:18554416   PMID:18799693   PMID:19334288   PMID:20657840   PMID:21677750  
PMID:21873635   PMID:22922362   PMID:30457570   PMID:32325033   PMID:32581705   PMID:33230847  


Genomics

Comparative Map Data
Srrm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394135,047,795 - 135,080,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4135,047,795 - 135,080,632 (-)EnsemblGRCm39 Ensembl
GRCm384135,320,484 - 135,353,277 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4135,320,484 - 135,353,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,876,399 - 134,909,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364134,594,109 - 134,625,212 (-)NCBIMGSCv36mm8
Celera4133,520,897 - 133,553,516 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.34NCBI
SRRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,643,302 - 24,673,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,631,716 - 24,673,281 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,969,793 - 24,999,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,842,181 - 24,872,359 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,714,899 - 24,745,067NCBI
Celera123,296,748 - 23,326,926 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef123,226,021 - 23,256,316 (+)NCBIHuRef
CHM1_1125,082,458 - 25,112,630 (+)NCBICHM1_1
T2T-CHM13v2.0124,481,714 - 24,511,711 (+)NCBIT2T-CHM13v2.0
Srrm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85152,843,167 - 152,875,554 (-)NCBIGRCr8
mRatBN7.25147,559,515 - 147,591,895 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5147,559,514 - 147,591,849 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5150,260,954 - 150,293,199 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05152,032,389 - 152,064,605 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05152,017,229 - 152,049,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05153,675,619 - 153,708,187 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5153,675,624 - 153,708,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05157,444,412 - 157,476,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45154,113,002 - 154,145,275 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15154,123,912 - 154,157,892 (-)NCBI
Celera5145,969,357 - 146,001,815 (-)NCBICelera
Cytogenetic Map5q36NCBI
Srrm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554524,401,089 - 4,435,391 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554524,401,089 - 4,433,986 (+)NCBIChiLan1.0ChiLan1.0
SRRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21202,258,410 - 202,289,470 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11201,361,917 - 201,392,150 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0123,844,303 - 23,874,333 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,821,565 - 24,850,997 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,821,565 - 24,850,997 (+)Ensemblpanpan1.1panPan2
SRRM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,018,637 - 75,053,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,019,339 - 75,049,398 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,592,376 - 71,627,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,580,276 - 75,615,505 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,580,276 - 75,610,975 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,402,996 - 72,438,163 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,410,032 - 73,445,248 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,414,288 - 74,449,470 (-)NCBIUU_Cfam_GSD_1.0
Srrm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505843,748,316 - 43,777,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364749,572,974 - 9,602,229 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364749,573,015 - 9,602,229 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl682,286,211 - 82,343,766 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1682,309,192 - 82,348,076 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2676,007,660 - 76,046,730 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120108,023,860 - 108,053,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660338,307,224 - 8,337,352 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srrm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247649,010,499 - 9,042,579 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1628
Count of miRNA genes:643
Interacting mature miRNAs:801
Transcripts:ENSMUST00000030613, ENSMUST00000084846, ENSMUST00000105861, ENSMUST00000131301, ENSMUST00000131373, ENSMUST00000134019, ENSMUST00000134854, ENSMUST00000136342, ENSMUST00000136409, ENSMUST00000136570, ENSMUST00000140050, ENSMUST00000150619, ENSMUST00000151251, ENSMUST00000154788, ENSMUST00000162914
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129465811136864536Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
4142082Psds2_mpsoriasis-like skin disease severity 2 (mouse)Not determined4133154678137617995Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse

Markers in Region
Srrm1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
cM Map4 UniSTS
RH124630  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384135,320,709 - 135,320,809UniSTSGRCm38
MGSCv374134,876,624 - 134,876,724UniSTSGRCm37
Celera4133,521,122 - 133,521,222UniSTS
Cytogenetic Map4D3UniSTS
UniSTS:235066  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384135,354,019 - 135,354,381UniSTSGRCm38
MGSCv374134,909,934 - 134,910,296UniSTSGRCm37
Celera4133,554,339 - 133,554,701UniSTS
Cytogenetic Map4D3UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001130477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006539033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003954981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF062655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE631951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU514596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030613   ⟹   ENSMUSP00000030613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,049,344 - 135,080,447 (-)Ensembl
GRCm38.p6 Ensembl4135,322,033 - 135,353,136 (-)Ensembl
Ensembl Acc Id: ENSMUST00000084846   ⟹   ENSMUSP00000081906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,047,802 - 135,080,555 (-)Ensembl
GRCm38.p6 Ensembl4135,320,491 - 135,353,244 (-)Ensembl
Ensembl Acc Id: ENSMUST00000105861   ⟹   ENSMUSP00000101487
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,047,795 - 135,080,632 (-)Ensembl
GRCm38.p6 Ensembl4135,320,484 - 135,353,321 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131301   ⟹   ENSMUSP00000125477
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,059,469 - 135,069,773 (-)Ensembl
GRCm38.p6 Ensembl4135,332,158 - 135,342,462 (-)Ensembl
Ensembl Acc Id: ENSMUST00000131373   ⟹   ENSMUSP00000122754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,069,722 - 135,080,453 (-)Ensembl
GRCm38.p6 Ensembl4135,342,411 - 135,353,142 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,073,003 - 135,080,513 (-)Ensembl
GRCm38.p6 Ensembl4135,345,692 - 135,353,202 (-)Ensembl
Ensembl Acc Id: ENSMUST00000134854
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,070,948 - 135,080,462 (-)Ensembl
GRCm38.p6 Ensembl4135,343,637 - 135,353,151 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136342   ⟹   ENSMUSP00000125003
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,048,405 - 135,080,555 (-)Ensembl
GRCm38.p6 Ensembl4135,321,094 - 135,353,244 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136409   ⟹   ENSMUSP00000124450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,071,839 - 135,074,515 (-)Ensembl
GRCm38.p6 Ensembl4135,344,528 - 135,347,204 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,051,079 - 135,052,160 (-)Ensembl
GRCm38.p6 Ensembl4135,323,768 - 135,324,849 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140050   ⟹   ENSMUSP00000120952
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,049,601 - 135,054,534 (-)Ensembl
GRCm38.p6 Ensembl4135,322,290 - 135,327,223 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150619
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,049,787 - 135,080,445 (-)Ensembl
GRCm38.p6 Ensembl4135,322,476 - 135,353,134 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151251
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,058,789 - 135,065,384 (-)Ensembl
GRCm38.p6 Ensembl4135,331,478 - 135,338,073 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,065,580 - 135,069,829 (-)Ensembl
GRCm38.p6 Ensembl4135,338,269 - 135,342,518 (-)Ensembl
Ensembl Acc Id: ENSMUST00000162914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4135,056,480 - 135,059,544 (-)Ensembl
GRCm38.p6 Ensembl4135,329,169 - 135,332,233 (-)Ensembl
RefSeq Acc Id: NM_001130477   ⟹   NP_001123949
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
MGSCv374134,876,399 - 134,909,129 (-)RGD
Celera4133,520,897 - 133,553,516 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001369067   ⟹   NP_001355996
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369068   ⟹   NP_001355997
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369069   ⟹   NP_001355998
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369070   ⟹   NP_001355999
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369071   ⟹   NP_001356000
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369072   ⟹   NP_001356001
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369073   ⟹   NP_001356002
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369074   ⟹   NP_001356003
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
Sequence:
RefSeq Acc Id: NM_016799   ⟹   NP_058079
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,796 - 135,080,457 (-)NCBI
GRCm384135,320,485 - 135,353,146 (-)NCBI
MGSCv374134,876,399 - 134,909,129 (-)RGD
Celera4133,520,897 - 133,553,516 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539026   ⟹   XP_006539089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,277 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539029   ⟹   XP_006539092
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539032   ⟹   XP_006539095
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006539033   ⟹   XP_006539096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,249 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320313   ⟹   XP_017175802
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253657   ⟹   XP_030109517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253658   ⟹   XP_030109518
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253659   ⟹   XP_030109519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253660   ⟹   XP_030109520
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253661   ⟹   XP_030109521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253662   ⟹   XP_030109522
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253663   ⟹   XP_030109523
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253664   ⟹   XP_030109524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,251 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253665   ⟹   XP_030109525
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,269 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253666   ⟹   XP_030109526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,450 (-)NCBI
GRCm384135,320,484 - 135,353,134 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253667   ⟹   XP_030109527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,253 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253668   ⟹   XP_030109528
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,069,708 (-)NCBI
GRCm384135,320,484 - 135,341,037 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253669   ⟹   XP_030109529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164229   ⟹   XP_036020122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164230   ⟹   XP_036020123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164231   ⟹   XP_036020124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164232   ⟹   XP_036020125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003954981
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
GRCm384135,320,484 - 135,353,274 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941932
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941933
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,047,795 - 135,080,787 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941934
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,052,139 - 135,080,787 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941935
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394135,052,139 - 135,080,787 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001123949 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355996 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355997 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355998 (Get FASTA)   NCBI Sequence Viewer  
  NP_001355999 (Get FASTA)   NCBI Sequence Viewer  
  NP_001356000 (Get FASTA)   NCBI Sequence Viewer  
  NP_001356001 (Get FASTA)   NCBI Sequence Viewer  
  NP_001356002 (Get FASTA)   NCBI Sequence Viewer  
  NP_001356003 (Get FASTA)   NCBI Sequence Viewer  
  NP_058079 (Get FASTA)   NCBI Sequence Viewer  
  XP_006539089 (Get FASTA)   NCBI Sequence Viewer  
  XP_006539092 (Get FASTA)   NCBI Sequence Viewer  
  XP_006539095 (Get FASTA)   NCBI Sequence Viewer  
  XP_006539096 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175802 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109517 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109518 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109519 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109520 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109521 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109522 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109523 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109524 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109525 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109526 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109527 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109528 (Get FASTA)   NCBI Sequence Viewer  
  XP_030109529 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020122 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020123 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020124 (Get FASTA)   NCBI Sequence Viewer  
  XP_036020125 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC17422 (Get FASTA)   NCBI Sequence Viewer  
  AAH94322 (Get FASTA)   NCBI Sequence Viewer  
  BAB25575 (Get FASTA)   NCBI Sequence Viewer  
  EDL29985 (Get FASTA)   NCBI Sequence Viewer  
  EDL29986 (Get FASTA)   NCBI Sequence Viewer  
  EDL29987 (Get FASTA)   NCBI Sequence Viewer  
  EDL29988 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000030613.4
  ENSMUSP00000081906
  ENSMUSP00000081906.6
  ENSMUSP00000101487
  ENSMUSP00000101487.2
  ENSMUSP00000120952.2
  ENSMUSP00000122754.2
  ENSMUSP00000124450.2
  ENSMUSP00000125003
  ENSMUSP00000125003.2
  ENSMUSP00000125477.2
GenBank Protein Q52KI8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058079   ⟸   NM_016799
- Peptide Label: isoform 1
- UniProtKB: E9PUK6 (UniProtKB/TrEMBL),   E9QKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001123949   ⟸   NM_001130477
- Peptide Label: isoform 2
- UniProtKB: A2A8V9 (UniProtKB/TrEMBL),   E9QKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539092   ⟸   XM_006539029
- Peptide Label: isoform X4
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539089   ⟸   XM_006539026
- Peptide Label: isoform X1
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539096   ⟸   XM_006539033
- Peptide Label: isoform X10
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006539095   ⟸   XM_006539032
- Peptide Label: isoform X10
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017175802   ⟸   XM_017320313
- Peptide Label: isoform X14
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030109520   ⟸   XM_030253660
- Peptide Label: isoform X7
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109521   ⟸   XM_030253661
- Peptide Label: isoform X9
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109517   ⟸   XM_030253657
- Peptide Label: isoform X2
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109529   ⟸   XM_030253669
- Peptide Label: isoform X18
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109519   ⟸   XM_030253659
- Peptide Label: isoform X5
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109518   ⟸   XM_030253658
- Peptide Label: isoform X3
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109525   ⟸   XM_030253665
- Peptide Label: isoform X15
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109523   ⟸   XM_030253663
- Peptide Label: isoform X13
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109522   ⟸   XM_030253662
- Peptide Label: isoform X12
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109527   ⟸   XM_030253667
- Peptide Label: isoform X17
RefSeq Acc Id: XP_030109524   ⟸   XM_030253664
- Peptide Label: isoform X13
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030109526   ⟸   XM_030253666
- Peptide Label: isoform X17
RefSeq Acc Id: XP_030109528   ⟸   XM_030253668
- Peptide Label: isoform X17
RefSeq Acc Id: NP_001356001   ⟸   NM_001369072
- Peptide Label: isoform 8
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355998   ⟸   NM_001369069
- Peptide Label: isoform 5
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355997   ⟸   NM_001369068
- Peptide Label: isoform 4
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355996   ⟸   NM_001369067
- Peptide Label: isoform 3
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001356000   ⟸   NM_001369071
- Peptide Label: isoform 7
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001355999   ⟸   NM_001369070
- Peptide Label: isoform 6
- UniProtKB: A2A8V8 (UniProtKB/TrEMBL),   E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001356002   ⟸   NM_001369073
- Peptide Label: isoform 9
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001356003   ⟸   NM_001369074
- Peptide Label: isoform 10
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000101487   ⟸   ENSMUST00000105861
Ensembl Acc Id: ENSMUSP00000081906   ⟸   ENSMUST00000084846
Ensembl Acc Id: ENSMUSP00000122754   ⟸   ENSMUST00000131373
Ensembl Acc Id: ENSMUSP00000125477   ⟸   ENSMUST00000131301
Ensembl Acc Id: ENSMUSP00000120952   ⟸   ENSMUST00000140050
Ensembl Acc Id: ENSMUSP00000030613   ⟸   ENSMUST00000030613
Ensembl Acc Id: ENSMUSP00000125003   ⟸   ENSMUST00000136342
Ensembl Acc Id: ENSMUSP00000124450   ⟸   ENSMUST00000136409
RefSeq Acc Id: XP_036020123   ⟸   XM_036164230
- Peptide Label: isoform X8
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020122   ⟸   XM_036164229
- Peptide Label: isoform X6
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020125   ⟸   XM_036164232
- Peptide Label: isoform X16
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036020124   ⟸   XM_036164231
- Peptide Label: isoform X11
- UniProtKB: E9QKA4 (UniProtKB/TrEMBL)
Protein Domains
PWI

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q52KI8-F1-model_v2 AlphaFold Q52KI8 1-946 view protein structure

Promoters
RGD ID:6836452
Promoter ID:MM_KWN:40131
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000022372
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,882,511 - 134,883,011 (-)MPROMDB
RGD ID:6836453
Promoter ID:MM_KWN:40132
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000022370
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,893,721 - 134,894,822 (-)MPROMDB
RGD ID:6836451
Promoter ID:MM_KWN:40133
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000022368,   OTTMUST00000022369
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,899,071 - 134,899,571 (-)MPROMDB
RGD ID:6836446
Promoter ID:MM_KWN:40134
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000022366
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,900,636 - 134,901,136 (-)MPROMDB
RGD ID:6836447
Promoter ID:MM_KWN:40135
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:OTTMUST00000022365
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,903,216 - 134,903,716 (-)MPROMDB
RGD ID:6836448
Promoter ID:MM_KWN:40136
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000030613,   ENSMUST00000084846,   ENSMUST00000097847,   ENSMUST00000105861,   ENSMUST00000105862,   NM_016799,   OTTMUST00000022363,   OTTMUST00000022364,   OTTMUST00000022367,   UC008VGG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,908,971 - 134,909,792 (-)MPROMDB
RGD ID:6885058
Promoter ID:EPDNEW_M5980
Type:initiation region
Name:Srrm1_1
Description:Mus musculus serine/arginine repetitive matrix 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384135,353,146 - 135,353,206EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858303 AgrOrtholog
Ensembl Genes ENSMUSG00000028809 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030613.11 UniProtKB/TrEMBL
  ENSMUST00000084846 ENTREZGENE
  ENSMUST00000084846.12 UniProtKB/TrEMBL
  ENSMUST00000105861 ENTREZGENE
  ENSMUST00000105861.8 UniProtKB/TrEMBL
  ENSMUST00000131301.2 UniProtKB/TrEMBL
  ENSMUST00000131373.8 UniProtKB/TrEMBL
  ENSMUST00000136342 ENTREZGENE
  ENSMUST00000136342.9 UniProtKB/TrEMBL
  ENSMUST00000136409.2 UniProtKB/TrEMBL
  ENSMUST00000140050.3 UniProtKB/TrEMBL
Gene3D-CATH PWI domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PWI_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PWI_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Arg_repetitive_matrix UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:51796 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1858303 ENTREZGENE
NCBI Gene Srrm1 ENTREZGENE
PANTHER SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PWI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Srrm1 PhenoGen
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE PWI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PWI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF101233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2A8V8 ENTREZGENE, UniProtKB/TrEMBL
  A2A8V9 ENTREZGENE, UniProtKB/TrEMBL
  A2A983_MOUSE UniProtKB/TrEMBL
  E9PUK6 ENTREZGENE, UniProtKB/TrEMBL
  E9QKA4 ENTREZGENE, UniProtKB/TrEMBL
  F6T4M4_MOUSE UniProtKB/TrEMBL
  F6UK16_MOUSE UniProtKB/TrEMBL
  F7BWM1_MOUSE UniProtKB/TrEMBL
  Q52KI8 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QNW8 UniProtKB/Swiss-Prot
  O70495 UniProtKB/Swiss-Prot
  Q9CVG5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 Srrm1  serine/arginine repetitive matrix 1  Srm160-pending  Ser/Arg-related nuclear matrix protein  Symbol and/or name change 5135510 APPROVED
2024-08-21 Srm160-pending  Ser/Arg-related nuclear matrix protein  Srrm1  serine/arginine repetitive matrix 1  Symbol and/or name change 5135510 APPROVED