Srrm1 (serine and arginine repetitive matrix 1) - Rat Genome Database

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Gene: Srrm1 (serine and arginine repetitive matrix 1) Heterocephalus glaber
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Symbol: Srrm1
Name: serine and arginine repetitive matrix 1
RGD ID: 18932941
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN mRNA processing (inferred); regulation of mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH gestational diabetes (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/arginine repetitive matrix protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247649,010,499 - 9,042,579 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Srrm1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247649,010,499 - 9,042,579 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SRRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38124,643,302 - 24,673,281 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl124,631,716 - 24,673,281 (+)EnsemblGRCh38hg38GRCh38
GRCh37124,969,793 - 24,999,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36124,842,181 - 24,872,359 (+)NCBINCBI36Build 36hg18NCBI36
Build 34124,714,899 - 24,745,067NCBI
Celera123,296,748 - 23,326,926 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef123,226,021 - 23,256,316 (+)NCBIHuRef
CHM1_1125,082,458 - 25,112,630 (+)NCBICHM1_1
T2T-CHM13v2.0124,481,714 - 24,511,711 (+)NCBIT2T-CHM13v2.0
Srrm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394135,047,795 - 135,080,787 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4135,047,795 - 135,080,632 (-)EnsemblGRCm39 Ensembl
GRCm384135,320,484 - 135,353,277 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4135,320,484 - 135,353,321 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,876,399 - 134,909,129 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364134,594,109 - 134,625,212 (-)NCBIMGSCv36mm8
Celera4133,520,897 - 133,553,516 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map467.34NCBI
Srrm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85152,843,167 - 152,875,554 (-)NCBIGRCr8
mRatBN7.25147,559,515 - 147,591,895 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5147,559,514 - 147,591,849 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5150,260,954 - 150,293,199 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05152,032,389 - 152,064,605 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05152,017,229 - 152,049,475 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05153,675,619 - 153,708,187 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5153,675,624 - 153,708,170 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05157,444,412 - 157,476,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45154,113,002 - 154,145,275 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15154,123,912 - 154,157,892 (-)NCBI
Celera5145,969,357 - 146,001,815 (-)NCBICelera
Cytogenetic Map5q36NCBI
Srrm1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554524,401,089 - 4,435,391 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554524,401,089 - 4,433,986 (+)NCBIChiLan1.0ChiLan1.0
SRRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21202,258,410 - 202,289,470 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11201,361,917 - 201,392,150 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0123,844,303 - 23,874,333 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1124,821,565 - 24,850,997 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl124,821,565 - 24,850,997 (+)Ensemblpanpan1.1panPan2
SRRM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,018,637 - 75,053,908 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,019,339 - 75,049,398 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,592,376 - 71,627,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,580,276 - 75,615,505 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,580,276 - 75,610,975 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1272,402,996 - 72,438,163 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0273,410,032 - 73,445,248 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0274,414,288 - 74,449,470 (-)NCBIUU_Cfam_GSD_1.0
Srrm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505843,748,316 - 43,777,438 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364749,572,974 - 9,602,229 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364749,573,015 - 9,602,229 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl682,286,211 - 82,343,766 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1682,309,192 - 82,348,076 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2676,007,660 - 76,046,730 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120108,023,860 - 108,053,959 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660338,307,224 - 8,337,352 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000024217   ⟹   ENSHGLP00000023999
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247649,010,499 - 9,042,579 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024218   ⟹   ENSHGLP00000024000
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247649,010,499 - 9,042,579 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024219   ⟹   ENSHGLP00000024001
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247649,013,869 - 9,042,339 (+)Ensembl
RefSeq Acc Id: XM_004850597   ⟹   XP_004850654
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_004850599   ⟹   XP_004850656
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_004850600   ⟹   XP_004850657
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_004850601   ⟹   XP_004850658
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,805 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_021263076   ⟹   XP_021118735
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_021263077   ⟹   XP_021118736
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_021263078   ⟹   XP_021118737
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_021263079   ⟹   XP_021118738
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,440 - 9,043,277 (+)NCBI
RefSeq Acc Id: XM_021263080   ⟹   XP_021118739
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247649,010,601 - 9,043,277 (+)NCBI
RefSeq Acc Id: XP_004850654   ⟸   XM_004850597
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118735   ⟸   XM_021263076
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850657   ⟸   XM_004850600
- Peptide Label: isoform X6
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118738   ⟸   XM_021263079
- Peptide Label: isoform X7
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118736   ⟸   XM_021263077
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850656   ⟸   XM_004850599
- Peptide Label: isoform X4
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118737   ⟸   XM_021263078
- Peptide Label: isoform X5
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021118739   ⟸   XM_021263080
- Peptide Label: isoform X8
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004850658   ⟸   XM_004850601
- Peptide Label: isoform X8
- UniProtKB: A0A0P6JCF6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000024000   ⟸   ENSHGLT00000024218
Ensembl Acc Id: ENSHGLP00000023999   ⟸   ENSHGLT00000024217
Ensembl Acc Id: ENSHGLP00000024001   ⟸   ENSHGLT00000024219


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017105 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024217 ENTREZGENE
  ENSHGLT00000024218 ENTREZGENE
Gene3D-CATH PWI domain UniProtKB/TrEMBL
InterPro PWI_dom UniProtKB/TrEMBL
  PWI_dom_sf UniProtKB/TrEMBL
  Ser/Arg_repetitive_matrix UniProtKB/TrEMBL
NCBI Gene Srrm1 ENTREZGENE
PANTHER SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN UniProtKB/TrEMBL
  SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1 UniProtKB/TrEMBL
Pfam PWI UniProtKB/TrEMBL
PROSITE PWI UniProtKB/TrEMBL
SMART PWI UniProtKB/TrEMBL
Superfamily-SCOP SSF101233 UniProtKB/TrEMBL
UniProt A0A0P6JCF6 ENTREZGENE, UniProtKB/TrEMBL