Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | SRRM1 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | genetic disease | | ISO | SRRM1 (Homo sapiens) | 8554872 | ClinVar Annotator: match by term: Inborn genetic diseases | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. | Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30. |
2. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
3. | A preliminary investigation on placenta protein profile reveals only modest changes in well controlled gestational diabetes mellitus. | Lapolla A, etal., Eur J Mass Spectrom (Chichester, Eng). 2013;19(3):211-23. |
4. | Rat ISS GO annotations from MGI mouse gene data--August 2006 | MGD data from the GO Consortium |
5. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
6. | GOA pipeline | RGD automated data pipeline |
7. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
8. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
9. | Comprehensive gene review and curation | RGD comprehensive gene curation |
10. | The ever-increasing complexities of the exon junction complex. | Tange TO, etal., Curr Opin Cell Biol. 2004 Jun;16(3):279-84. |
Srrm1 (Rattus norvegicus - Norway rat) |
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SRRM1 (Homo sapiens - human) |
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Srrm1 (Mus musculus - house mouse) |
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Srrm1 (Chinchilla lanigera - long-tailed chinchilla) |
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SRRM1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SRRM1 (Canis lupus familiaris - dog) |
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Srrm1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SRRM1 (Sus scrofa - pig) |
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SRRM1 (Chlorocebus sabaeus - green monkey) |
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Srrm1 (Heterocephalus glaber - naked mole-rat) |
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Variants in Srrm1
83 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
High | |||||||||||||
Medium | 3 | 38 | 51 | 35 | 19 | 35 | 2 | 5 | 74 | 35 | 41 | 11 | 2 |
Low | 5 | 6 | 6 | 6 | 6 | 6 | 6 | ||||||
Below cutoff |
RefSeq Transcripts | NM_001107986 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006239182 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006239183 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006239184 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006239185 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008764242 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_008764243 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017593406 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017593407 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039110050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039110051 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039110052 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287766 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287767 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287768 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287769 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287770 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287771 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287772 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063287773 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | BC166715 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
CH473968 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ231188 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ232425 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ234079 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000005 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSRNOT00000056105 ⟹ ENSRNOP00000052955 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000082037 ⟹ ENSRNOP00000073024 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000096755 ⟹ ENSRNOP00000097970 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000116482 ⟹ ENSRNOP00000088781 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSRNOT00000119442 ⟹ ENSRNOP00000082336 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001107986 ⟹ NP_001101456 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006239182 ⟹ XP_006239244 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006239183 ⟹ XP_006239245 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006239184 ⟹ XP_006239246 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006239185 ⟹ XP_006239247 | ||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_008764242 ⟹ XP_008762464 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017593406 ⟹ XP_017448895 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017593407 ⟹ XP_017448896 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_039110050 ⟹ XP_038965978 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039110051 ⟹ XP_038965979 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_039110052 ⟹ XP_038965980 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | XM_063287766 ⟹ XP_063143836 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287767 ⟹ XP_063143837 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287768 ⟹ XP_063143838 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287769 ⟹ XP_063143839 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287770 ⟹ XP_063143840 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287771 ⟹ XP_063143841 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287772 ⟹ XP_063143842 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_063287773 ⟹ XP_063143843 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001101456 | (Get FASTA) | NCBI Sequence Viewer |
XP_006239244 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006239245 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006239246 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006239247 | (Get FASTA) | NCBI Sequence Viewer | |
XP_008762464 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017448895 | (Get FASTA) | NCBI Sequence Viewer | |
XP_017448896 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038965978 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038965979 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038965980 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143836 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143837 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143838 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143839 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143840 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143841 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143842 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063143843 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI66715 | (Get FASTA) | NCBI Sequence Viewer |
EDL80752 | (Get FASTA) | NCBI Sequence Viewer | |
EDL80753 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000052955 | ||
ENSRNOP00000052955.3 | |||
ENSRNOP00000073024.2 | |||
ENSRNOP00000082336 | |||
ENSRNOP00000082336.1 | |||
ENSRNOP00000088781.1 | |||
ENSRNOP00000097970 | |||
ENSRNOP00000097970.1 |
RefSeq Acc Id: | NP_001101456 ⟸ NM_001107986 |
- UniProtKB: | B2RYB3 (UniProtKB/TrEMBL), A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006239246 ⟸ XM_006239184 |
- Peptide Label: | isoform X3 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006239245 ⟸ XM_006239183 |
- Peptide Label: | isoform X2 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006239244 ⟸ XM_006239182 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I5ZV38 (UniProtKB/TrEMBL), A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006239247 ⟸ XM_006239185 |
- Peptide Label: | isoform X5 |
- UniProtKB: | F7FND9 (UniProtKB/TrEMBL), A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_008762464 ⟸ XM_008764242 |
- Peptide Label: | isoform X10 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017448895 ⟸ XM_017593406 |
- Peptide Label: | isoform X8 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017448896 ⟸ XM_017593407 |
- Peptide Label: | isoform X15 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSRNOP00000073024 ⟸ ENSRNOT00000082037 |
RefSeq Acc Id: | ENSRNOP00000052955 ⟸ ENSRNOT00000056105 |
RefSeq Acc Id: | XP_038965980 ⟸ XM_039110052 |
- Peptide Label: | isoform X11 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038965979 ⟸ XM_039110051 |
- Peptide Label: | isoform X7 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038965978 ⟸ XM_039110050 |
- Peptide Label: | isoform X6 |
- UniProtKB: | A0A8I6ATQ3 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | ENSRNOP00000082336 ⟸ ENSRNOT00000119442 |
RefSeq Acc Id: | ENSRNOP00000088781 ⟸ ENSRNOT00000116482 |
RefSeq Acc Id: | ENSRNOP00000097970 ⟸ ENSRNOT00000096755 |
RefSeq Acc Id: | XP_063143836 ⟸ XM_063287766 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_063143839 ⟸ XM_063287769 |
- Peptide Label: | isoform X13 |
RefSeq Acc Id: | XP_063143838 ⟸ XM_063287768 |
- Peptide Label: | isoform X12 |
RefSeq Acc Id: | XP_063143837 ⟸ XM_063287767 |
- Peptide Label: | isoform X9 |
RefSeq Acc Id: | XP_063143840 ⟸ XM_063287770 |
- Peptide Label: | isoform X14 |
RefSeq Acc Id: | XP_063143841 ⟸ XM_063287771 |
- Peptide Label: | isoform X15 |
RefSeq Acc Id: | XP_063143842 ⟸ XM_063287772 |
- Peptide Label: | isoform X16 |
RefSeq Acc Id: | XP_063143843 ⟸ XM_063287773 |
- Peptide Label: | isoform X17 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-A0A0G2K4F6-F1-model_v2 | AlphaFold | A0A0G2K4F6 | 1-912 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13694153 | ||||||||
Promoter ID: | EPDNEW_R4676 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Srrm1_1 | ||||||||
Description: | serine and arginine repetitive matrix 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1311258 | AgrOrtholog |
BioCyc Gene | G2FUF-39546 | BioCyc |
Ensembl Genes | ENSRNOG00000018194 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000056105.4 | UniProtKB/TrEMBL |
ENSRNOT00000082037.2 | UniProtKB/TrEMBL | |
ENSRNOT00000096755 | ENTREZGENE | |
ENSRNOT00000096755.1 | UniProtKB/TrEMBL | |
ENSRNOT00000116482.1 | UniProtKB/TrEMBL | |
ENSRNOT00000119442.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | PWI domain | UniProtKB/TrEMBL |
IMAGE_CLONE | IMAGE:7930852 | IMAGE-MGC_LOAD |
InterPro | PWI | UniProtKB/TrEMBL |
PWI_dom_sf | UniProtKB/TrEMBL | |
KEGG Report | rno:313620 | UniProtKB/TrEMBL |
MGC_CLONE | MGC:188416 | IMAGE-MGC_LOAD |
NCBI Gene | 313620 | ENTREZGENE |
PANTHER | SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN | UniProtKB/TrEMBL |
SERINE/ARGININE REPETITIVE MATRIX PROTEIN 1 | UniProtKB/TrEMBL | |
Pfam | PWI | UniProtKB/TrEMBL |
PhenoGen | Srrm1 | PhenoGen |
PROSITE | PWI | UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000018194 | RatGTEx |
SMART | PWI | UniProtKB/TrEMBL |
Superfamily-SCOP | PWI | UniProtKB/TrEMBL |
UniProt | A0A0G2K4F6_RAT | UniProtKB/TrEMBL |
A0A8I5ZV38 | ENTREZGENE, UniProtKB/TrEMBL | |
A0A8I6A8I2_RAT | UniProtKB/TrEMBL | |
A0A8I6ATQ3 | ENTREZGENE, UniProtKB/TrEMBL | |
B2RYB3 | ENTREZGENE, UniProtKB/TrEMBL | |
F7FND9 | ENTREZGENE, UniProtKB/TrEMBL |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-03-16 | Srrm1 | serine and arginine repetitive matrix 1 | Srrm1 | serine/arginine repetitive matrix 1 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-04-30 | Srrm1 | serine/arginine repetitive matrix 1 | Srrm1_predicted | serine/arginine repetitive matrix 1 (predicted) | 'predicted' is removed | 2292626 | APPROVED |
2005-01-12 | Srrm1_predicted | serine/arginine repetitive matrix 1 (predicted) | Symbol and Name status set to approved | 70820 | APPROVED |