Artn (artemin) - Rat Genome Database

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Gene: Artn (artemin) Mus musculus
Analyze
Symbol: Artn
Name: artemin
RGD ID: 733582
MGI Page MGI
Description: Enables signaling receptor binding activity. Involved in Peyer's patch morphogenesis and lymphocyte migration into lymphoid organs. Acts upstream of or within axon guidance; induction of positive chemotaxis; and peripheral nervous system development. Located in extracellular space. Is expressed in central nervous system; early conceptus; oviduct; retina; and small intestine. Orthologous to human ARTN (artemin).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: neub; neublastin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,783,105 - 117,787,993 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,783,359 - 117,786,960 (-)EnsemblGRCm39 Ensembl
GRCm384117,925,908 - 117,930,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,926,162 - 117,929,763 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,598,767 - 117,602,368 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,424,094 - 117,427,695 (-)NCBIMGSCv36mm8
Celera4116,641,832 - 116,645,434 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Nerve growth factor and artemin are paracrine mediators of pancreatic neuropathy in pancreatic adenocarcinoma. Ceyhan GO, etal., Ann Surg. 2010 May;251(5):923-31.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. BDNF mRNA expression is significantly upregulated in vestibular schwannomas and correlates with proliferative activity. Kramer F, etal., J Neurooncol. 2010 May;98(1):31-9. doi: 10.1007/s11060-009-0063-6. Epub 2009 Nov 25.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Acetyl-l-carnitine increases artemin level and prevents neurotrophic factor alterations during neuropathy. Vivoli E, etal., Neuroscience. 2010 Jun 2;167(4):1168-74. Epub 2010 Mar 16.
10. Persistent restoration of sensory function by immediate or delayed systemic artemin after dorsal root injury. Wang R, etal., Nat Neurosci. 2008 Apr;11(4):488-96. Epub 2008 Mar 23.
11. Nan fang yi ke da xue xue bao = Journal of Southern Medical University Zhu DL, etal., Nan Fang Yi Ke Da Xue Xue Bao. 2009 Mar;29(3):428-32.
Additional References at PubMed
PMID:9883723   PMID:10349636   PMID:10482239   PMID:10673327   PMID:11003834   PMID:11042159   PMID:11076861   PMID:11585795   PMID:12160745   PMID:12477932   PMID:15204970   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:16781061   PMID:16914684   PMID:16914685   PMID:17322904   PMID:18216204   PMID:18417692   PMID:18652806   PMID:18657279   PMID:19580811  
PMID:20534675   PMID:21123573   PMID:21267068   PMID:21590285   PMID:21873635   PMID:22770266   PMID:22855506   PMID:23462468   PMID:23884957   PMID:24107967   PMID:24487590   PMID:24952961  
PMID:25635057   PMID:27571008   PMID:28270618   PMID:29606356   PMID:31358547   PMID:31748650  


Genomics

Comparative Map Data
Artn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,783,105 - 117,787,993 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,783,359 - 117,786,960 (-)EnsemblGRCm39 Ensembl
GRCm384117,925,908 - 117,930,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,926,162 - 117,929,763 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,598,767 - 117,602,368 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,424,094 - 117,427,695 (-)NCBIMGSCv36mm8
Celera4116,641,832 - 116,645,434 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.83NCBI
ARTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,933,801 - 43,937,240 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,933,320 - 43,937,240 (+)EnsemblGRCh38hg38GRCh38
GRCh37144,399,473 - 44,402,912 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,171,579 - 44,175,471 (+)NCBINCBI36Build 36hg18NCBI36
Build 34144,070,746 - 44,071,977NCBI
Celera142,682,525 - 42,686,445 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef142,517,866 - 42,521,786 (+)NCBIHuRef
CHM1_1144,515,224 - 44,519,144 (+)NCBICHM1_1
T2T-CHM13v2.0143,802,329 - 43,808,317 (+)NCBIT2T-CHM13v2.0
Artn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85136,750,188 - 136,755,645 (-)NCBIGRCr8
mRatBN7.25131,458,596 - 131,470,193 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,464,756 - 131,468,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,169,882 - 134,173,127 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05135,924,501 - 135,927,746 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,946,923 - 135,950,168 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05136,759,717 - 136,765,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,759,717 - 136,762,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,548,766 - 140,554,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,390,981 - 138,394,250 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15138,396,703 - 138,397,079 (-)NCBI
Celera5130,012,959 - 130,016,228 (-)NCBICelera
Cytogenetic Map5q36NCBI
Artn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,460,176 - 3,464,335 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,460,176 - 3,464,335 (+)NCBIChiLan1.0ChiLan1.0
ARTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,872,431 - 182,878,378 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,013,760 - 182,019,707 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,233,097 - 43,239,044 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,604,514 - 44,610,643 (+)NCBIpanpan1.1PanPan1.1panPan2
ARTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1516,435,953 - 16,442,427 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,469,613 - 16,476,086 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11516,268,455 - 16,274,928 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,340,604 - 16,343,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,410,202 - 16,416,677 (-)NCBIUU_Cfam_GSD_1.0
Artn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,423,684 - 59,434,755 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647425,252,684 - 25,253,810 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647425,252,510 - 25,254,221 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,357,662 - 167,360,729 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,356,363 - 167,361,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,725,018 - 154,726,492 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,869,463 - 88,874,036 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,869,941 - 88,871,049 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,051,970 - 28,057,269 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Artn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248923,214,012 - 3,218,699 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248923,213,203 - 3,218,699 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:526
Count of miRNA genes:293
Interacting mature miRNAs:317
Transcripts:ENSMUST00000070816, ENSMUST00000097913, ENSMUST00000133703, ENSMUST00000150612
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904006Cfq1_mconditioned fear QTL 1 (mouse)4117177646120107755Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
14696689Gdq2_mgrooming duration QTL 2, females (mouse)4100857197124893793Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
4141330Iva1_misovaleric acid smelling 1 (mouse)Not determined117071971120723203Mouse
10412072Ssen1_msuseptibility to Sendai virus 1 (mouse)Not determined4109658132133154782Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300655Nidds_mnon-insulin-dependent diabetes mellitus in SJL (mouse)Not determined4115030777129465915Mouse
13208565Bmiq6_mbody mass index QTL 6 (mouse)4110857197125893793Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
1300689Dob1_mDietary obesity 1 (mouse)Body weight4101574601123127211Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
1301847Fecq2_mfecundity QTL 2 (mouse)Not determined4100071971134072206Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
1301106Skts7_mskin tumor susceptibility 7 (mouse)Not determined4100071971134072206Mouse
1301233Sbw2_msplenomegaly-NZB x NZW 2 (mouse)Not determined494957579128009280Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
1301731Cafq2_mcaffeine metabolism QTL 2 (mouse)Not determined494732255128732454Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101157197135157197Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1300580Lbw2_mlupus NZB x NZW 2 (mouse)Not determined498545539128009280Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse
1301996Mmtg2_mmodifier of mammary tumor growth 2 (mouse)Not determined4116270979124055180Mouse

Markers in Region
Artn  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384117,926,336 - 117,926,438UniSTSGRCm38
MGSCv374117,598,941 - 117,599,043UniSTSGRCm37
Celera4116,642,007 - 116,642,109UniSTS
Cytogenetic Map4D1UniSTS
cM Map4 UniSTS
UniSTS:484828  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384117,926,293 - 117,927,884UniSTSGRCm38
MGSCv374117,598,898 - 117,600,489UniSTSGRCm37
Celera4116,641,963 - 116,643,555UniSTS
Cytogenetic Map4D1UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001284191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001284193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006502694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011240419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF109402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FB748375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000070816   ⟹   ENSMUSP00000064521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,783,359 - 117,786,960 (-)Ensembl
GRCm38.p6 Ensembl4117,926,162 - 117,929,763 (-)Ensembl
Ensembl Acc Id: ENSMUST00000097913   ⟹   ENSMUSP00000095526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,783,360 - 117,786,694 (-)Ensembl
GRCm38.p6 Ensembl4117,926,163 - 117,929,497 (-)Ensembl
Ensembl Acc Id: ENSMUST00000133703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,785,239 - 117,786,674 (-)Ensembl
GRCm38.p6 Ensembl4117,928,042 - 117,929,477 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4117,785,341 - 117,786,610 (-)Ensembl
GRCm38.p6 Ensembl4117,928,144 - 117,929,413 (-)Ensembl
RefSeq Acc Id: NM_001284191   ⟹   NP_001271120
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,357 - 117,786,960 (-)NCBI
GRCm384117,926,160 - 117,929,763 (-)NCBI
Celera4116,641,830 - 116,645,434 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001284192   ⟹   NP_001271121
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,357 - 117,786,960 (-)NCBI
GRCm384117,926,160 - 117,929,763 (-)NCBI
Celera4116,641,830 - 116,645,434 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001284193   ⟹   NP_001271122
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,357 - 117,786,960 (-)NCBI
GRCm384117,926,160 - 117,929,763 (-)NCBI
Celera4116,641,830 - 116,645,434 (-)NCBI
Sequence:
RefSeq Acc Id: NM_009711   ⟹   NP_033841
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,357 - 117,786,960 (-)NCBI
GRCm384117,926,160 - 117,929,763 (-)NCBI
MGSCv374117,598,767 - 117,602,368 (-)RGD
Celera4116,641,830 - 116,645,434 (-)NCBI
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006502690   ⟹   XP_006502753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,105 - 117,787,988 (-)NCBI
GRCm384117,925,908 - 117,930,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502691   ⟹   XP_006502754
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,105 - 117,787,988 (-)NCBI
GRCm384117,925,908 - 117,930,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502692   ⟹   XP_006502755
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,105 - 117,787,988 (-)NCBI
GRCm384117,925,908 - 117,930,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502693   ⟹   XP_006502756
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,105 - 117,787,988 (-)NCBI
GRCm384117,925,908 - 117,930,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006502694   ⟹   XP_006502757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,105 - 117,787,993 (-)NCBI
GRCm384117,925,908 - 117,930,795 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011240419   ⟹   XP_011238721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,105 - 117,787,988 (-)NCBI
GRCm384117,925,908 - 117,930,791 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030253105   ⟹   XP_030108965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394117,783,105 - 117,787,988 (-)NCBI
GRCm384117,925,908 - 117,930,791 (-)NCBI
Sequence:
RefSeq Acc Id: NP_033841   ⟸   NM_009711
- Peptide Label: isoform 1 preproprotein
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001271120   ⟸   NM_001284191
- Peptide Label: isoform 1 preproprotein
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001271122   ⟸   NM_001284193
- Peptide Label: isoform 1 preproprotein
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001271121   ⟸   NM_001284192
- Peptide Label: isoform 2 precursor
- UniProtKB: Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502757   ⟸   XM_006502694
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006502756   ⟸   XM_006502693
- Peptide Label: isoform X1
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502754   ⟸   XM_006502691
- Peptide Label: isoform X1
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502755   ⟸   XM_006502692
- Peptide Label: isoform X1
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006502753   ⟸   XM_006502690
- Peptide Label: isoform X1
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011238721   ⟸   XM_011240419
- Peptide Label: isoform X1
- UniProtKB: Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot),   Q9Z0L2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030108965   ⟸   XM_030253105
- Peptide Label: isoform X1
- UniProtKB: Q9Z0L2 (UniProtKB/Swiss-Prot),   Q3SXF4 (UniProtKB/Swiss-Prot),   Q3SXF5 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000064521   ⟸   ENSMUST00000070816
Ensembl Acc Id: ENSMUSP00000095526   ⟸   ENSMUST00000097913

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0L2-F1-model_v2 AlphaFold Q9Z0L2 1-224 view protein structure

Promoters
RGD ID:6834909
Promoter ID:MM_KWN:39274
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain,   MEF_B4
Transcripts:NM_009711,   OTTMUST00000019625,   OTTMUST00000019626,   UC008UJI.1,   UC008UJJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364117,602,016 - 117,602,702 (-)MPROMDB
RGD ID:6884392
Promoter ID:EPDNEW_M5647
Type:multiple initiation site
Name:Artn_2
Description:Mus musculus artemin , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5648  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384117,929,470 - 117,929,530EPDNEW
RGD ID:6884394
Promoter ID:EPDNEW_M5648
Type:initiation region
Name:Artn_1
Description:Mus musculus artemin , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M5647  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384117,929,734 - 117,929,794EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1333791 AgrOrtholog
Ensembl Genes ENSMUSG00000028539 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000070816 ENTREZGENE
  ENSMUST00000070816.9 UniProtKB/Swiss-Prot
  ENSMUST00000097913 ENTREZGENE
  ENSMUST00000097913.9 UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot
  GDNF_fam UniProtKB/Swiss-Prot
  TGF-b_C UniProtKB/Swiss-Prot
KEGG Report mmu:11876 UniProtKB/Swiss-Prot
MGD MGI:1333791 ENTREZGENE
NCBI Gene 11876 ENTREZGENE
PANTHER ARTEMIN UniProtKB/Swiss-Prot
  PTHR12173 UniProtKB/Swiss-Prot
Pfam TGF_beta UniProtKB/Swiss-Prot
PhenoGen Artn PhenoGen
PROSITE TGF_BETA_2 UniProtKB/Swiss-Prot
SMART TGFB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot
UniProt ARTN_MOUSE UniProtKB/Swiss-Prot
  Q3SXF4 ENTREZGENE
  Q3SXF5 ENTREZGENE
  Q9Z0L2 ENTREZGENE
UniProt Secondary Q3SXF4 UniProtKB/Swiss-Prot
  Q3SXF5 UniProtKB/Swiss-Prot