ARTN (artemin) - Rat Genome Database

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Gene: ARTN (artemin) Chlorocebus sabaeus
Analyze
Symbol: ARTN
Name: artemin
RGD ID: 18359761
Description: ENCODES a protein that exhibits glial cell-derived neurotrophic factor receptor binding (inferred); growth factor activity (inferred); receptor tyrosine kinase binding (inferred); INVOLVED IN axon guidance (ortholog); induction of positive chemotaxis (ortholog); peripheral nervous system development (ortholog); ASSOCIATED WITH acoustic neuroma (ortholog); Animal Disease Models (ortholog); atopic dermatitis (ortholog); FOUND IN extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,869,463 - 88,874,036 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,869,941 - 88,871,049 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,051,970 - 28,057,269 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,869,463 - 88,874,036 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,869,941 - 88,871,049 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,051,970 - 28,057,269 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,933,801 - 43,937,240 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,933,320 - 43,937,240 (+)EnsemblGRCh38hg38GRCh38
GRCh37144,399,473 - 44,402,912 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,171,579 - 44,175,471 (+)NCBINCBI36Build 36hg18NCBI36
Build 34144,070,746 - 44,071,977NCBI
Celera142,682,525 - 42,686,445 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef142,517,866 - 42,521,786 (+)NCBIHuRef
CHM1_1144,515,224 - 44,519,144 (+)NCBICHM1_1
T2T-CHM13v2.0143,802,329 - 43,808,317 (+)NCBIT2T-CHM13v2.0
Artn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,783,105 - 117,787,993 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,783,359 - 117,786,960 (-)EnsemblGRCm39 Ensembl
GRCm384117,925,908 - 117,930,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,926,162 - 117,929,763 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,598,767 - 117,602,368 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,424,094 - 117,427,695 (-)NCBIMGSCv36mm8
Celera4116,641,832 - 116,645,434 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.83NCBI
Artn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85136,750,188 - 136,755,645 (-)NCBIGRCr8
mRatBN7.25131,458,596 - 131,470,193 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,464,756 - 131,468,025 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,169,882 - 134,173,127 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05135,924,501 - 135,927,746 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,946,923 - 135,950,168 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05136,759,717 - 136,765,036 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,759,717 - 136,762,986 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,548,766 - 140,554,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,390,981 - 138,394,250 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15138,396,703 - 138,397,079 (-)NCBI
Celera5130,012,959 - 130,016,228 (-)NCBICelera
Cytogenetic Map5q36NCBI
Artn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,460,176 - 3,464,335 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,460,176 - 3,464,335 (+)NCBIChiLan1.0ChiLan1.0
ARTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,872,431 - 182,878,378 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11182,013,760 - 182,019,707 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,233,097 - 43,239,044 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,604,514 - 44,610,643 (+)NCBIpanpan1.1PanPan1.1panPan2
ARTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1516,435,953 - 16,442,427 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,469,613 - 16,476,086 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11516,268,455 - 16,274,928 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,340,604 - 16,343,946 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,410,202 - 16,416,677 (-)NCBIUU_Cfam_GSD_1.0
Artn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,423,684 - 59,434,755 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647425,252,684 - 25,253,810 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647425,252,510 - 25,254,221 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,357,662 - 167,360,729 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,356,363 - 167,361,370 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26154,725,018 - 154,726,492 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Artn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248923,214,012 - 3,218,699 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248923,213,203 - 3,218,699 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 19 35 35 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000017344   ⟹   ENSCSAP00000016825
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2088,869,941 - 88,871,049 (-)Ensembl
RefSeq Acc Id: XM_007979070   ⟹   XP_007977261
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12088,869,463 - 88,874,036 (-)NCBI
Vero_WHO_p1.0NW_02366603328,053,547 - 28,057,269 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007979071   ⟹   XP_007977262
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12088,869,463 - 88,874,036 (-)NCBI
Vero_WHO_p1.0NW_02366603328,051,970 - 28,057,269 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007977261 (Get FASTA)   NCBI Sequence Viewer  
  XP_007977262 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016825.1
RefSeq Acc Id: XP_007977262   ⟸   XM_007979071
- UniProtKB: A0A0D9S7I6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007977261   ⟸   XM_007979070
- UniProtKB: A0A0D9S7I6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000016825   ⟸   ENSCSAT00000017344


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001189 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017344.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  GDNF_fam UniProtKB/TrEMBL
  TGF-b_C UniProtKB/TrEMBL
KEGG Report csab:103224958 UniProtKB/TrEMBL
NCBI Gene ARTN ENTREZGENE
PANTHER ARTEMIN UniProtKB/TrEMBL
  PTHR12173 UniProtKB/TrEMBL
Pfam TGF_beta UniProtKB/TrEMBL
PROSITE TGF_BETA_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt A0A0D9S7I6 ENTREZGENE, UniProtKB/TrEMBL