Mir6402 (microRNA 6402) - Rat Genome Database

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Gene: Mir6402 (microRNA 6402) Mus musculus
Analyze
Symbol: Mir6402
Name: microRNA 6402
RGD ID: 9593724
MGI Page MGI
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Gm27764; mmu-mir-6402
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39491,261,521 - 91,261,600 (-)NCBIGRCm39mm39
GRCm39 Ensembl491,261,521 - 91,261,600 (-)Ensembl
GRCm38491,373,284 - 91,373,363 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl491,373,284 - 91,373,363 (-)EnsemblGRCm38mm10GRCm38
Celera489,825,752 - 89,825,831 (-)NCBICelera
Cytogenetic Map4C5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:22319597  


Genomics


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117215009Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000129100000Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108500000Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105299798Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105944663Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123233418Mouse
1301033Abbp2_mA/J and C57BL/6 blood pressure 2 (mouse)Not determined45355083993875068Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124161387Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103400000Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000129100000Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094900000Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
10043964Obq26_mobesity QTL 26 (mouse)Not determined45912901493129014Mouse
1301190Cd4ts2_mCD4 T cell subset 2 (mouse)Not determined46022704094227187Mouse
1357507Synch2_msynechia 2 (mouse)Not determined46022704094227187Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46370128997701448Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46430422398304223Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465400000119000000Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46579984999799849Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46680000098700000Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466838893100839021Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466970208100970351Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468100000107300000Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468100000130500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469200000131000000Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470148990104149227Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined472063832106063979Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined472063832106063979Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)472063832106063979Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474145650108145792Mouse
1301597Anxty_manxiety (mouse)Not determined474219337128115487Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474556462108556746Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474556462108556746Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474556462108556746Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474556462108556746Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474556462108556746Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474556462108556746Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474556462108556746Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474556462108556746Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474556462108556746Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474556462108556746Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474800000108500000Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475700000100300000Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476874870110875068Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined478069342112069538Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479477514113477630Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479477514113477630Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479477514113477630Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479477514113477630Mouse
12904738Idohtq_miris defect with ocular hypertension QTL (mouse)48083423093224754Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481325754115325754Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482356158116356345Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483200000108500000Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483747673117747809Mouse
10412176Habiir3_mhyperoxic acute lung injury imprinted region 3 (mouse)Not determined48383889394405503Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)485000000107300000Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485200000105100000Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485571641119571840Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485571641119571840Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485923970119924082Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485923970119924082Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487600000103400000Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487600000107300000Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487600000108500000Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488200000108500000Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488200000118700000Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488600000108500000Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488600000108600000Mouse
1300601Tlsr1_mthymic lymphoma suppressor region 1 (mouse)Not determined48868292195069538Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)489063832116413923Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13824979Epid1_mepididymis and vas deferens weight 1 (mouse)490000000100000000Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)490000000119000000Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined490112430124112550Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490733471124733584Mouse
27226760Feml19_mfemur length 19, 16 week (mouse)491000000108600000Mouse
27226782Tibl2_mtibia length 2, 5 week (mouse)491000000111400000Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)491025583125025583Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:10723
Count of gene targets:5441
Count of transcripts:8568
Interacting mature miRNAs:mmu-miR-6402
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_105828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL837505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000183406
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl491,373,284 - 91,373,363 (-)Ensembl
RefSeq Acc Id: NR_105828
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39491,261,521 - 91,261,600 (-)NCBI
GRCm38491,373,284 - 91,373,363 (-)NCBI
Celera489,825,752 - 89,825,831 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098563 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000183406 ENTREZGENE
MGD MGI:5531146 ENTREZGENE
miRBase MI0021938 ENTREZGENE
NCBI Gene Mir6402 ENTREZGENE
PhenoGen Mir6402 PhenoGen
RNAcentral URS000075BBCC RNACentral
  URS000075ED4C RNACentral