Ctnnbip1 (catenin beta interacting protein 1) - Rat Genome Database

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Gene: Ctnnbip1 (catenin beta interacting protein 1) Mus musculus
Analyze
Symbol: Ctnnbip1
Name: catenin beta interacting protein 1
RGD ID: 1558093
MGI Page MGI
Description: Enables beta-catenin binding activity. Involved in several processes, including negative regulation of canonical Wnt signaling pathway; negative regulation of smooth muscle cell proliferation; and negative regulation of transcription initiation by RNA polymerase II. Acts upstream of or within anterior/posterior pattern specification; branching involved in ureteric bud morphogenesis; and negative regulation of Wnt signaling pathway. Part of beta-catenin-ICAT complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; immune system; and respiratory system. Orthologous to human CTNNBIP1 (catenin beta interacting protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110008O09Rik; 2310001I19Rik; AW457332; beta-catenin-interacting protein 1; Catn; Catnbip1; IC; Icat; inhibitor of beta-catenin and Tcf-4
RGD Orthologs
Human
Rat
Bonobo
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,602,698 - 149,650,894 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,602,693 - 149,650,894 (+)EnsemblGRCm39 Ensembl
GRCm384149,518,241 - 149,566,437 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,518,236 - 149,566,437 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,892,350 - 148,940,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,362,043 - 148,410,525 (+)NCBIMGSCv36mm8
Celera4151,781,834 - 151,831,616 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.66NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
beta-catenin destruction complex  (IBA,ISO)
beta-catenin-ICAT complex  (IPI)
cytoplasm  (ISO,TAS)
cytosol  (IBA,ISO)
nucleus  (IBA,ISO,TAS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10898789   PMID:11042159   PMID:11076861   PMID:11751639   PMID:12036951   PMID:12408824   PMID:12477932   PMID:12874278   PMID:12904583   PMID:14610273  
PMID:15148409   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16678101   PMID:17122440   PMID:17596282   PMID:17803964   PMID:18287559   PMID:18576323   PMID:19515997   PMID:19906978  
PMID:20514292   PMID:21220513   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23339455   PMID:23554908   PMID:24194600   PMID:24952961   PMID:25321480   PMID:27521659   PMID:27626380  
PMID:36181623   PMID:37479047   PMID:38355793  


Genomics

Comparative Map Data
Ctnnbip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,602,698 - 149,650,894 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,602,693 - 149,650,894 (+)EnsemblGRCm39 Ensembl
GRCm384149,518,241 - 149,566,437 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,518,236 - 149,566,437 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,892,350 - 148,940,546 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,362,043 - 148,410,525 (+)NCBIMGSCv36mm8
Celera4151,781,834 - 151,831,616 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.66NCBI
CTNNBIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,848,276 - 9,910,269 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,848,276 - 9,910,336 (-)EnsemblGRCh38hg38GRCh38
GRCh3719,908,334 - 9,970,327 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,830,921 - 9,892,903 (-)NCBINCBI36Build 36hg18NCBI36
Build 3419,842,599 - 9,904,582NCBI
Celera19,019,961 - 9,067,271 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,064,315 - 9,126,095 (-)NCBIHuRef
CHM1_119,896,913 - 9,959,080 (-)NCBICHM1_1
T2T-CHM13v2.019,391,187 - 9,453,193 (-)NCBIT2T-CHM13v2.0
Ctnnbip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,245,019 - 165,293,994 (+)NCBIGRCr8
mRatBN7.25159,961,961 - 160,010,942 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,961,928 - 160,010,939 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,678,674 - 162,727,565 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,498,802 - 164,547,740 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,455,166 - 164,504,103 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,464,170 - 166,513,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,464,252 - 166,513,027 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,110,484 - 170,159,320 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,601,155 - 166,650,163 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5158,231,700 - 158,280,408 (+)NCBICelera
Cytogenetic Map5q36NCBI
CTNNBIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,310,966 - 218,373,080 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,956,584 - 217,018,714 (+)NCBINHGRI_mPanPan1
CTNNBIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,184,936 - 70,241,477 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,184,935 - 70,241,560 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CTNNBIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,861,266 - 121,921,541 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,892,415 - 121,921,621 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605425,787,892 - 25,851,657 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Ctnnbip1
56 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1099
Count of miRNA genes:521
Interacting mature miRNAs:646
Transcripts:ENSMUST00000030839, ENSMUST00000105692
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse

Markers in Region
AW457332  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,566,197 - 149,566,277UniSTSGRCm38
MGSCv374148,940,306 - 148,940,386UniSTSGRCm37
Celera4151,831,376 - 151,831,456UniSTS
Cytogenetic Map4E2UniSTS
Whitehead/MRC_RH41926.26UniSTS
D4Mit225.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,547,972 - 149,548,111UniSTSGRCm38
MGSCv374148,922,081 - 148,922,220UniSTSGRCm37
Celera4151,813,127 - 151,813,266UniSTS
Cytogenetic Map4E2UniSTS
cM Map480.0UniSTS
cM Map4 UniSTS
Whitehead Genetic472.1UniSTS
UniSTS:235100  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,565,347 - 149,565,499UniSTSGRCm38
MGSCv374148,939,456 - 148,939,608UniSTSGRCm37
Celera4151,830,526 - 151,830,678UniSTS
Cytogenetic Map4E2UniSTS
MT2058  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,548,103 - 149,548,252UniSTSGRCm38
MGSCv374148,922,212 - 148,922,361UniSTSGRCm37
Celera4151,813,258 - 151,813,405UniSTS
Cytogenetic Map4E2UniSTS
cM Map480.0UniSTS
Whitehead Genetic472.1UniSTS
Whitehead/MRC_RH41926.36UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001141930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_023465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB021261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL607078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ031304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ043263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU210912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU302290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000030839   ⟹   ENSMUSP00000030839
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,602,693 - 149,650,894 (+)Ensembl
GRCm38.p6 Ensembl4149,518,236 - 149,566,437 (+)Ensembl
RefSeq Acc Id: ENSMUST00000105692   ⟹   ENSMUSP00000101317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,629,574 - 149,648,965 (+)Ensembl
GRCm38.p6 Ensembl4149,545,117 - 149,564,508 (+)Ensembl
RefSeq Acc Id: NM_001141930   ⟹   NP_001135402
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,629,574 - 149,650,894 (+)NCBI
GRCm384149,545,117 - 149,566,437 (+)NCBI
MGSCv374148,892,350 - 148,940,546 (+)RGD
Celera4151,781,834 - 151,831,616 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_023465   ⟹   NP_075954
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,602,698 - 149,650,894 (+)NCBI
GRCm384149,518,241 - 149,566,437 (+)ENTREZGENE
MGSCv374148,892,350 - 148,940,546 (+)RGD
Celera4151,781,834 - 151,831,616 (+)RGD
cM Map4 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_075954   ⟸   NM_023465
- UniProtKB: Q9JJN6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001135402   ⟸   NM_001141930
- UniProtKB: Q9JJN6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000101317   ⟸   ENSMUST00000105692
RefSeq Acc Id: ENSMUSP00000030839   ⟸   ENSMUST00000030839

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JJN6-F1-model_v2 AlphaFold Q9JJN6 1-81 view protein structure

Promoters
RGD ID:6835096
Promoter ID:MM_KWN:40886
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:ENSMUST00000030839
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,892,204 - 148,892,704 (+)MPROMDB
RGD ID:6835098
Promoter ID:MM_KWN:40887
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000116260
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,913,901 - 148,914,401 (+)MPROMDB
RGD ID:6847797
Promoter ID:MM_ACW:36651
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:CTNNBIP1.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,938,451 - 148,938,951 (+)MPROMDB
RGD ID:6885570
Promoter ID:EPDNEW_M6236
Type:initiation region
Name:Ctnnbip1_1
Description:Mus musculus catenin beta interacting protein 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6237  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384149,518,236 - 149,518,296EPDNEW
RGD ID:6885572
Promoter ID:EPDNEW_M6237
Type:multiple initiation site
Name:Ctnnbip1_2
Description:Mus musculus catenin beta interacting protein 1 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6236  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384149,539,871 - 149,539,931EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915756 AgrOrtholog
Ensembl Genes ENSMUSG00000028988 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000030839 ENTREZGENE
  ENSMUST00000030839.13 UniProtKB/Swiss-Prot
  ENSMUST00000105692 ENTREZGENE
  ENSMUST00000105692.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.490 UniProtKB/Swiss-Prot
InterPro CTNNBIP1 UniProtKB/Swiss-Prot
  ICAT_dom UniProtKB/Swiss-Prot
  ICAT_sf UniProtKB/Swiss-Prot
KEGG Report mmu:67087 UniProtKB/Swiss-Prot
MGD MGI:1915756 ENTREZGENE
NCBI Gene 67087 ENTREZGENE
PANTHER BETA-CATENIN-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR47142 UniProtKB/Swiss-Prot
Pfam ICAT UniProtKB/Swiss-Prot
PhenoGen Ctnnbip1 PhenoGen
Superfamily-SCOP SSF81730 UniProtKB/Swiss-Prot
UniProt CNBP1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE