Cda (cytidine deaminase) - Rat Genome Database

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Gene: Cda (cytidine deaminase) Mus musculus
Analyze
Symbol: Cda
Name: cytidine deaminase
RGD ID: 1322378
MGI Page MGI
Description: Enables cytidine deaminase activity and identical protein binding activity. Involved in UMP salvage. Is active in cytosol. Is expressed in several structures, including alimentary system; eye; genitourinary system; heart; and nervous system. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CDA (cytidine deaminase).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 2210401N16Rik; cytidine aminohydrolase; MGC67370
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,065,839 - 138,095,623 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4138,065,735 - 138,095,303 (-)EnsemblGRCm39 Ensembl
GRCm384138,338,528 - 138,368,311 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,338,424 - 138,367,992 (-)EnsemblGRCm38mm10GRCm38
MGSCv374137,894,443 - 137,923,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,610,604 - 137,640,031 (-)NCBIMGSCv36mm8
Celera4140,122,623 - 140,152,350 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-tert-Octylphenol  (EXP)
5'-Deoxy-5-fluorocytidine  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorocytidine  (EXP,ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
calciol  (ISO)
calcitriol  (ISO)
captan  (EXP)
carbon nanotube  (EXP)
celastrol  (ISO)
chlorambucil  (ISO)
chlorpyrifos  (EXP)
choline  (EXP)
chromium(6+)  (EXP)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crizotinib  (ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
dichloroacetic acid  (EXP)
dioxygen  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (EXP)
fipronil  (ISO)
folic acid  (EXP)
folpet  (EXP)
formaldehyde  (ISO)
furan  (ISO)
gemcitabine  (ISO)
genistein  (EXP)
gentamycin  (ISO)
gold atom  (EXP)
gold(0)  (EXP)
hydrogen peroxide  (ISO)
ifosfamide  (ISO)
inulin  (EXP)
isotretinoin  (ISO)
L-methionine  (EXP)
melphalan  (ISO)
methimazole  (ISO)
mitomycin C  (ISO)
oxaliplatin  (ISO)
p-tert-Amylphenol  (EXP)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
protein kinase inhibitor  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
succimer  (EXP)
sulforaphane  (ISO)
tamoxifen  (EXP)
Tegafur  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
trichloroethene  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IDA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Adenosine deaminase, 5'-nucleotidase, guanase and cytidine deaminase activities in gastric tissues from patients with gastric cancer. Durak I, etal., Cancer Lett. 1994 Sep 15;84(2):199-202. doi: 10.1016/0304-3835(94)90376-x.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Identification of new SNPs associated with severe toxicity to capecitabine. Pellicer M, etal., Pharmacol Res. 2017 Jun;120:133-137. doi: 10.1016/j.phrs.2017.03.021. Epub 2017 Mar 27.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Pharmacokinetics of gemcitabine in Japanese cancer patients: the impact of a cytidine deaminase polymorphism. Sugiyama E, etal., J Clin Oncol. 2007 Jan 1;25(1):32-42.
12. Correlation of CDA, ERCC1, and XPD polymorphisms with response and survival in gemcitabine/cisplatin-treated advanced non-small cell lung cancer patients. Tibaldi C, etal., Clin Cancer Res. 2008 Mar 15;14(6):1797-803.
13. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:5651639   PMID:6498945   PMID:7923172   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11591653   PMID:12477932   PMID:12810823   PMID:14610273   PMID:14681479  
PMID:15489334   PMID:16141072   PMID:16141073   PMID:16784234   PMID:16835384   PMID:18554416   PMID:18716662   PMID:21267068   PMID:21677750   PMID:21841819   PMID:21873635   PMID:23095233  
PMID:27461566   PMID:32325033   PMID:33172478   PMID:35449600   PMID:36496104   PMID:37086201  


Genomics

Comparative Map Data
Cda
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394138,065,839 - 138,095,623 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4138,065,735 - 138,095,303 (-)EnsemblGRCm39 Ensembl
GRCm384138,338,528 - 138,368,311 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4138,338,424 - 138,367,992 (-)EnsemblGRCm38mm10GRCm38
MGSCv374137,894,443 - 137,923,870 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364137,610,604 - 137,640,031 (-)NCBIMGSCv36mm8
Celera4140,122,623 - 140,152,350 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map470.17NCBI
CDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38120,589,097 - 20,618,903 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl120,589,086 - 20,618,903 (+)EnsemblGRCh38hg38GRCh38
GRCh37120,915,590 - 20,945,396 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36120,788,031 - 20,817,988 (+)NCBINCBI36Build 36hg18NCBI36
Build 34120,660,836 - 20,690,702NCBI
Celera119,239,772 - 19,269,752 (+)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef119,161,467 - 19,190,528 (+)NCBIHuRef
CHM1_1121,025,824 - 21,055,781 (+)NCBICHM1_1
T2T-CHM13v2.0120,414,048 - 20,443,922 (+)NCBIT2T-CHM13v2.0
Cda
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85155,839,929 - 155,866,541 (-)NCBIGRCr8
mRatBN7.25150,556,615 - 150,583,231 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5150,556,615 - 150,583,231 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5153,252,247 - 153,279,877 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05155,026,533 - 155,054,163 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05155,008,554 - 155,036,184 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05156,703,579 - 156,734,541 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5156,703,579 - 156,734,541 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl5156,757,044 - 156,781,291 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05160,452,101 - 160,482,729 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45157,117,303 - 157,143,989 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15157,127,441 - 157,153,991 (-)NCBI
Celera5148,950,060 - 148,976,672 (-)NCBICelera
Cytogenetic Map5q36NCBI
Cda
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554521,132,049 - 1,156,565 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554521,131,968 - 1,156,777 (+)NCBIChiLan1.0ChiLan1.0
CDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21206,506,028 - 206,535,363 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11205,618,335 - 205,647,685 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,538,696 - 19,568,008 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1120,583,441 - 20,612,711 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl120,583,441 - 20,612,711 (+)Ensemblpanpan1.1panPan2
CDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1278,305,328 - 78,327,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl278,304,726 - 78,327,247 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha274,819,639 - 74,841,500 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0278,872,416 - 78,894,283 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl278,870,359 - 78,894,541 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,690,869 - 75,712,919 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0276,702,707 - 76,724,560 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,706,391 - 77,728,271 (-)NCBIUU_Cfam_GSD_1.0
Cda
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505840,718,495 - 40,739,795 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364746,543,220 - 6,566,308 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364746,543,295 - 6,564,575 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl678,824,270 - 78,849,547 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1678,824,248 - 78,849,154 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2673,017,555 - 73,042,459 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120111,931,365 - 111,960,172 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20111,931,364 - 111,960,036 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660334,270,608 - 4,299,725 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cda
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247645,621,899 - 5,645,850 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247645,621,888 - 5,645,055 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cda
1046 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:361
Count of miRNA genes:266
Interacting mature miRNAs:302
Transcripts:ENSMUST00000030535, ENSMUST00000144986
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1357534Cinda3_mcytokine induced activation 3 (mouse)Not determined4137617848142289472Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
12050091Shm2_msperm head morphology 2 (mouse)4136876000138342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse

Markers in Region
Cda  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4D3UniSTS
cM Map4 UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000030535   ⟹   ENSMUSP00000030535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4138,065,839 - 138,095,303 (-)Ensembl
GRCm38.p6 Ensembl4138,338,528 - 138,367,992 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4138,065,735 - 138,070,960 (-)Ensembl
GRCm38.p6 Ensembl4138,338,424 - 138,343,649 (-)Ensembl
RefSeq Acc Id: NM_028176   ⟹   NP_082452
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,065,839 - 138,095,266 (-)NCBI
GRCm384138,338,528 - 138,367,955 (-)NCBI
MGSCv374137,894,443 - 137,923,870 (-)RGD
Celera4140,122,623 - 140,152,350 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006539196   ⟹   XP_006539259
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394138,079,173 - 138,095,623 (-)NCBI
GRCm384138,351,862 - 138,368,311 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_082452 (Get FASTA)   NCBI Sequence Viewer  
  XP_006539259 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH22649 (Get FASTA)   NCBI Sequence Viewer  
  AAH50114 (Get FASTA)   NCBI Sequence Viewer  
  BAB25898 (Get FASTA)   NCBI Sequence Viewer  
  EDL13263 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000030535
  ENSMUSP00000030535.4
GenBank Protein P56389 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_082452   ⟸   NM_028176
- UniProtKB: Q9D7V3 (UniProtKB/Swiss-Prot),   P56389 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006539259   ⟸   XM_006539196
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000030535   ⟸   ENSMUST00000030535
Protein Domains
CMP/dCMP-type deaminase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P56389-F1-model_v2 AlphaFold P56389 1-146 view protein structure

Promoters
RGD ID:6835039
Promoter ID:MM_KWN:40312
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:OTTMUST00000023202
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364137,923,701 - 137,924,201 (-)MPROMDB
RGD ID:6885186
Promoter ID:EPDNEW_M6044
Type:initiation region
Name:Cda_1
Description:Mus musculus cytidine deaminase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384138,367,992 - 138,368,052EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919519 AgrOrtholog
Ensembl Genes ENSMUSG00000028755 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000030535 ENTREZGENE
  ENSMUST00000030535.4 UniProtKB/Swiss-Prot
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro APOBEC/CMP_deaminase_Zn-bd UniProtKB/Swiss-Prot
  CMP_dCMP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cyt_deam_tetra UniProtKB/Swiss-Prot
  Cytidine_deaminase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72269 UniProtKB/Swiss-Prot
MGD MGI:1919519 ENTREZGENE
NCBI Gene 72269 ENTREZGENE
PANTHER CYTIDINE DEAMINASE UniProtKB/Swiss-Prot
  CYTIDINE DEAMINASE UniProtKB/Swiss-Prot
  CYTIDINE DEAMINASE UniProtKB/TrEMBL
  CYTIDINE DEAMINASE UniProtKB/TrEMBL
Pfam dCMP_cyt_deam_1 UniProtKB/Swiss-Prot
PharmGKB CDA RGD
PhenoGen Cda PhenoGen
PROSITE CYT_DCMP_DEAMINASES_1 UniProtKB/Swiss-Prot
  CYT_DCMP_DEAMINASES_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53927 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CDD_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8R219_MOUSE UniProtKB/TrEMBL
  Q9D7V3 ENTREZGENE
UniProt Secondary Q9D7V3 UniProtKB/Swiss-Prot