Cdc42 (cell division cycle 42) - Rat Genome Database

Name: Cdc42
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Cdc42 (cell division cycle 42) Mus musculus

Analyze

Symbol:

Cdc42

Name:

cell division cycle 42

RGD ID:

730977

MGI Page

MGI

Description:

Exhibits several functions, including GTP-dependent protein binding activity; GTPase activity; and Rho GDP-dissociation inhibitor binding activity. Involved in several processes, including neuron differentiation; positive regulation of cellular component organization; and positive regulation of phosphorylation. Localizes to several cellular components, including leading edge membrane; phagocytic vesicle; and storage vacuole. Is expressed in several structures, including alimentary system; brain; early conceptus; genitourinary system; and hemolymphoid system gland. Used to study microvillus inclusion disease. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42); PARTICIPATES IN adenosine signaling pathway; c-Jun N-terminal kinases MAPK signaling pathway; E-cadherin signaling pathway; INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 1,4-dichlorobenzene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

AI747189; AU018915; cell division control protein 42 homolog; cell division cycle 42 homolog; G25K GTP-binding protein

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDC42 (cell division cycle 42)	HGNC	EggNOG, Ensembl, HGNC, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cdc42 (cell division cycle 42)	HGNC	Treefam, EggNOG, NCBI, OMA, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Cdc42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDC42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC403934 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdc42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDC42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CDC42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdc42 (cell division cycle 42)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Cdc42 (cell division cycle 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	CDC42 (cell division cycle 42)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	cdc42l2 (cell division cycle 42 like 2)	Alliance	DIOPT (PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	cdc42 (cell division cycle 42)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|Roundup\|TreeFam)
Danio rerio (zebrafish):	cdc42l (cell division cycle 42, like)	Alliance	DIOPT (OrthoFinder\|PANTHER\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	CDC42	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	Cdc42	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	cdc-42	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)

Related Pseudogenes:

Gm12492 Gm18964 Gm7407

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	137,047,007 - 137,085,070 (-)	NCBI	GRCm39		mm39
GRCm38	4	137,319,696 - 137,357,759 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	137,319,696 - 137,357,720 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	136,875,611 - 136,913,652 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	136,591,779 - 136,608,205 (-)	NCBI			mm8
Celera	4	135,540,002 - 135,577,854 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	69.83	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Adrenal Gland Neoplasms (ISO)

Alzheimer's disease (ISO)

Animal Mammary Neoplasms (ISO)

bipolar disorder (ISO)

carcinoma (ISO)

Experimental Arthritis (IEP)

fibrosarcoma (ISO)

genetic disease (ISO)

human immunodeficiency virus infectious disease (ISO)

Mammary Neoplasms, Experimental (ISO)

microvillus inclusion disease (IEA)

Necrosis (ISO)

Noonan Like Syndrome (ISO)

pancreatic cancer (ISO)

Reperfusion Injury (ISO)

rhinitis (ISO)

Spinal Cord Injuries (ISO)

Takenouchi-Kosaki Syndrome (ISO)

temporal lobe epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(-)-epigallocatechin 3-gallate (ISO)

(S)-nicotine (EXP)

1,2-dimethylhydrazine (EXP)

1,4-dichlorobenzene (EXP)

1,8-cineole (EXP)

1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (EXP)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (ISO)

3-isobutyl-1-methyl-7H-xanthine (EXP)

4-hydroxyphenyl retinamide (EXP)

acetylsalicylic acid (ISO)

acrylamide (ISO)

aflatoxin B1 (EXP,ISO)

aldehydo-D-glucose (EXP)

all-trans-retinoic acid (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (EXP)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

bazedoxifene (ISO)

benzene (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

bortezomib (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

calcium atom (EXP)

calcium(0) (EXP)

carbon nanotube (ISO)

carboplatin (ISO)

casticin (EXP)

cefaloridine (ISO)

chrysene (EXP)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (EXP)

CU-O LINKAGE (ISO)

D-glucose (EXP)

dexamethasone (EXP,ISO)

diarsenic trioxide (ISO)

disodium selenite (ISO)

ethanol (EXP,ISO)

flusilazole (EXP)

folic acid (EXP)

formaldehyde (ISO)

fumonisin B1 (EXP)

gallic acid (ISO)

gamma-hexachlorocyclohexane (ISO)

gentamycin (ISO)

glucose (EXP)

glyphosate (ISO)

GTP (EXP,ISO)

haloperidol (ISO)

hexaconazole (EXP)

hydralazine (ISO)

hypochlorous acid (EXP)

indometacin (ISO)

kainic acid (ISO)

lead(0) (ISO)

lead(2+) (ISO)

lovastatin (EXP,ISO)

mercury dichloride (ISO)

metformin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

microcystin-LR (EXP)

N-methyl-4-phenylpyridinium (ISO)

niclosamide (ISO)

nicotine (EXP)

NSC 23766 (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (EXP)

phenobarbital (EXP)

pioglitazone (ISO)

piroxicam (ISO)

Propiverine (ISO)

quercetin (ISO)

resveratrol (EXP,ISO)

Risedronate sodium (EXP,ISO)

rotenone (ISO)

SB 431542 (ISO)

simvastatin (EXP)

sodium arsenite (ISO)

sodium dichromate (ISO)

tamoxifen (EXP)

tert-butyl hydroperoxide (ISO)

testosterone (EXP)

titanium dioxide (EXP)

tremolite asbestos (ISO)

triadimefon (EXP)

Triptolide (ISO)

valproic acid (ISO)

warfarin (EXP)

zinc oxide (ISO)

zoledronic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (ISO)

actin filament branching (ISO)

actin filament organization (ISO)

adherens junction organization (IMP)

cardiac conduction system development (IGI)

Cdc42 protein signal transduction (IBA,ISO)

cell differentiation (IEA)

cell junction assembly (ISO)

cell migration (IBA)

cell projection assembly (IBA)

cell-cell adhesion (TAS)

cellular protein localization (IMP)

cellular response to interferon-gamma (IDA)

dendritic cell migration (IGI)

dendritic spine morphogenesis (IMP)

endocytosis (IBA,IMP)

endosomal transport (TAS)

establishment of epithelial cell apical/basal polarity (ISO)

establishment of Golgi localization (ISO)

establishment or maintenance of apical/basal cell polarity (IMP)

establishment or maintenance of cell polarity (TAS)

filopodium assembly (IDA)

Golgi organization (ISO)

heart contraction (IGI)

integrin-mediated signaling pathway (ISO)

modification of synaptic structure (IBA,ISO)

negative regulation of protein-containing complex assembly (ISO)

nervous system development (IEA)

neuron fate determination (IMP)

neuropilin signaling pathway (ISO)

nuclear migration (IMP)

nucleus localization (IMP)

organelle transport along microtubule (ISO)

phagocytosis, engulfment (ISO)

positive regulation of actin cytoskeleton reorganization (ISO)

positive regulation of catalytic activity (ISO)

positive regulation of cell growth (ISO)

positive regulation of cytokinesis (ISO)

positive regulation of DNA replication (ISO)

positive regulation of epithelial cell proliferation involved in lung morphogenesis (IMP)

positive regulation of filopodium assembly (IMP,ISO)

positive regulation of intracellular protein transport (ISO)

positive regulation of JNK cascade (ISO)

positive regulation of lamellipodium assembly (ISO)

positive regulation of MAPK cascade (IDA)

positive regulation of neuron apoptotic process (ISO)

positive regulation of phosphatidylinositol 3-kinase activity (IMP)

positive regulation of pinocytosis (IMP)

positive regulation of pseudopodium assembly (ISO)

positive regulation of stress fiber assembly (ISO)

positive regulation of substrate adhesion-dependent cell spreading (ISO)

positive regulation of synapse structural plasticity (ISO)

regulation of attachment of spindle microtubules to kinetochore (ISO)

regulation of filopodium assembly (ISO)

regulation of lamellipodium assembly (ISO)

regulation of mitotic nuclear division (IMP)

regulation of modification of postsynaptic structure (ISO)

regulation of protein binding (IDA)

regulation of stress fiber assembly (ISO)

Rho protein signal transduction (TAS)

small GTPase mediated signal transduction (IEA)

sprouting angiogenesis (ISO)

submandibular salivary gland formation (ISO)

substantia nigra development (ISO)

viral RNA genome replication (ISO)

Cellular Component

apical part of cell (IDA)

cell periphery (IDA)

cell projection (IDA)

cell-cell junction (IDA)

centrosome (ISO)

cytoplasm (IDA,ISO)

cytoplasmic ribonucleoprotein granule (ISO)

cytoskeleton (IEA)

cytosol (IDA)

dendritic spine (IBA,ISO)

filopodium (ISO)

Golgi membrane (ISO)

Golgi transport complex (ISO)

leading edge membrane (IDA)

membrane (IEA,ISO)

midbody (ISO)

mitotic spindle (ISO)

myelin sheath (HDA)

neuron projection (ISO)

neuronal cell body (ISO)

phagocytic vesicle (IDA)

plasma membrane (IDA,ISO,TAS)

protein-containing complex (ISO)

Schaffer collateral - CA1 synapse (ISO)

secretory granule (ISO)

spindle midzone (ISO)

storage vacuole (IDA)

Molecular Function

apolipoprotein A-I receptor binding (ISO)

GBD domain binding (ISO)

GTP binding (IBA,ISO)

GTP-dependent protein binding (IPI)

GTPase activity (IBA,IDA,IGI,ISA,ISO,TAS)

hydrolase activity (IEA)

identical protein binding (ISO)

mitogen-activated protein kinase kinase kinase binding (ISO)

nucleotide binding (IEA)

protein binding (IPI,ISO)

protein kinase binding (IPI,ISO)

Rho GDP-dissociation inhibitor binding (IDA)

thioesterase binding (ISO)

ubiquitin protein ligase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

adenosine signaling pathway (ISO)

c-Jun N-terminal kinases MAPK signaling pathway (ISO)

ceramide signaling pathway (IEA)

E-cadherin signaling pathway (ISO)

endocytosis pathway (IEA)

endothelin signaling pathway (ISO)

ephrin - ephrin receptor bidirectional signaling axis (ISO)

gonadotropin-releasing hormone signaling pathway (IEA)

insulin secretion pathway (TAS)

mitogen activated protein kinase signaling pathway (IEA)

N-cadherin signaling pathway (ISO)

neurotrophic factor signaling pathway (IEA)

p38 MAPK signaling pathway (ISO)

pancreatic cancer pathway (IEA)

renal cell carcinoma pathway (IEA)

Rho/Rac/Cdc42 mediated signaling pathway (ISO)

sphingosine 1-phosphate signaling pathway (ISO)

T cell receptor signaling pathway (IEA)

vascular endothelial growth factor signaling pathway (IEA,ISO)

Wnt signaling, non-canonical pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal anus morphology (IAGP)

abnormal autopod joint morphology (IAGP)

abnormal autopod morphology (IAGP)

abnormal brain ependyma morphology (IAGP)

abnormal brain ventricle morphology (IAGP)

abnormal cartilage development (IAGP)

abnormal cell morphology (IAGP)

abnormal cell nucleus morphology (IAGP)

abnormal cellular glucose uptake (IAGP)

abnormal cerebral aqueduct morphology (IAGP)

abnormal cerebral cortex morphology (IAGP)

abnormal cortical plate morphology (IAGP)

abnormal cortical ventricular zone morphology (IAGP)

abnormal cranium morphology (IEA)

abnormal crypts of Lieberkuhn morphology (IAGP)

abnormal defecation (IAGP)

abnormal embryonic neuroepithelium morphology (IAGP)

abnormal enterocyte morphology (IAGP)

abnormal epidermal layer morphology (IAGP)

abnormal epidermis stratum corneum morphology (IAGP)

abnormal eye development (IAGP)

abnormal folding of telencephalic vesicles (IAGP)

abnormal glial cell morphology (IAGP)

abnormal hair follicle matrix region morphology (IAGP)

abnormal hair follicle morphology (IAGP)

abnormal hair shaft morphology (IAGP)

abnormal interdigital cell death (IAGP)

abnormal intestinal enteroendocrine cell morphology (IAGP)

abnormal intestinal epithelium morphology (IAGP)

abnormal intestinal goblet cell morphology (IAGP)

abnormal intestine morphology (IAGP)

abnormal intestine physiology (IAGP)

abnormal intramembranous bone ossification (IAGP)

abnormal joint morphology (IAGP)

abnormal keratinocyte morphology (IAGP)

abnormal kidney cortex morphology (IAGP)

abnormal kidney development (IAGP)

abnormal kidney papilla morphology (IAGP)

abnormal lateral ventricle morphology (IAGP)

abnormal limb bone morphology (IAGP)

abnormal limb morphology (IAGP)

abnormal long bone epiphyseal plate morphology (IAGP)

abnormal myelin sheath morphology (IAGP)

abnormal neocortex morphology (IAGP)

abnormal nephrogenic zone morphology (IAGP)

abnormal neuronal precursor proliferation (IAGP)

abnormal Paneth cell morphology (IAGP)

abnormal parietal lobe morphology (IAGP)

abnormal platelet activation (IAGP)

abnormal platelet dense granule physiology (IAGP)

abnormal platelet morphology (IAGP)

abnormal platelet physiology (IAGP)

abnormal proximal convoluted tubule morphology (IAGP)

abnormal renal tubule epithelium morphology (IAGP)

abnormal retina morphology (IEA)

abnormal secondary palate development (IAGP)

abnormal small intestinal crypt cell physiology (IAGP)

abnormal small intestinal villus morphology (IAGP)

abnormal spinal cord central canal morphology (IAGP)

abnormal suckling behavior (IAGP)

abnormal telencephalon development (IAGP)

abnormal third ventricle morphology (IAGP)

abnormal xiphoid process morphology (IAGP)

absent brain ependyma motile cilia (IAGP)

absent embryonic epiblast (IAGP)

absent gastric milk in neonates (IAGP)

absent hair follicle inner root sheath (IAGP)

absent Paneth cells (IAGP)

anuria (IAGP)

brachydactyly (IAGP)

cerebral aqueductal stenosis (IAGP)

cleft palate (IAGP)

decreased birth body size (IAGP)

decreased body length (IAGP)

decreased body size (IAGP)

decreased cardiac output (IAGP)

decreased cardiac stroke volume (IAGP)

decreased circulating serum albumin level (IEA)

decreased embryo size (IAGP)

decreased neuronal precursor cell number (IAGP)

decreased Paneth cell number (IAGP)

decreased renal glomerulus number (IAGP)

decreased renal tubule number (IAGP)

decreased ventricle muscle contractility (IAGP)

delayed fontanelle closure (IAGP)

dermal cysts (IAGP)

disorganized embryonic tissue (IAGP)

disorganized long bone epiphyseal plate (IAGP)

domed cranium (IAGP)

embryonic lethality between implantation and somite formation, complete penetrance (IAGP)

embryonic lethality prior to organogenesis (IEA)

embryonic lethality prior to tooth bud stage (IEA)

enlarged brain ventricles (IAGP)

enlarged kidney (IEA)

enlarged lateral ventricles (IAGP)

enlarged third ventricle (IAGP)

epidermal hyperplasia (IAGP)

fused metacarpal bones (IAGP)

fused phalanges (IAGP)

holoprosencephaly (IAGP)

hydrocephaly (IAGP)

hyperkeratosis (IAGP)

hypoactivity (IAGP)

increased bleeding time (IAGP)

increased circulating alkaline phosphatase level (IEA)

increased circulating aspartate transaminase level (IEA)

increased lean body mass (IEA)

increased platelet aggregation (IAGP)

increased small intestinal crypt cell apoptosis (IAGP)

increased susceptibility to induced thrombosis (IAGP)

increased susceptibility to kidney reperfusion injury (IAGP)

increased width of hypertrophic chondrocyte zone (IAGP)

interdigital webbing (IAGP)

intestinal edema (IAGP)

intraventricular hemorrhage (IAGP)

lethality throughout fetal growth and development, complete penetrance (IAGP)

neonatal lethality, incomplete penetrance (IAGP)

no abnormal phenotype detected (IAGP)

postnatal growth retardation (IAGP)

postnatal lethality, complete penetrance (IAGP)

postnatal lethality, incomplete penetrance (IAGP)

premature death (IAGP)

preweaning lethality, complete penetrance (IEA)

prolonged P wave (IAGP)

prolonged QRS complex duration (IAGP)

prolonged QT interval (IAGP)

renal hypoplasia (IAGP)

respiratory distress (IAGP)

short limbs (IAGP)

short tibia (IEA)

small embryonic telencephalon (IAGP)

small olfactory bulb (IAGP)

split sternum (IAGP)

syndactyly (IAGP)

thin cerebral cortex (IAGP)

thrombocytopenia (IAGP)

weakness (IAGP)

References

References - curated


1.	Cardell LO, etal., Allergy. 2009 Sep;64(9):1301-8. Epub 2009 Apr 27.
2.	Cuadrado A and Nebreda AR, Biochem J. 2010 Aug 1;429(3):403-17. doi: 10.1042/BJ20100323.
3.	Erschbamer MK, etal., J Comp Neurol. 2005 Apr 4;484(2):224-33.
4.	Fanger GR, etal., EMBO J. 1997 Aug 15;16(16):4961-72.
5.	Gong TW, etal., Biochim Biophys Acta 1997 Jun 26;1352(3):282-92.
6.	Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
7.	Khan OM, etal., J Clin Invest. 2011 Feb;121(2):628-39. doi: 10.1172/JCI43758. Epub 2011 Jan 25.
8.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
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11.	Marques CA, etal., Blood. 2008 Feb 1;111(3):1413-9. Epub 2007 Oct 30.
12.	MGD and Homologene mouse data transfer
13.	MGD data from the GO Consortium
14.	MGD IEA
15.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
16.	OMIM Disease Annotation Pipeline
17.	Padmos RC, etal., Arch Gen Psychiatry. 2008 Apr;65(4):395-407.
18.	Pipeline to import KEGG annotations from KEGG into RGD
19.	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
20.	Pipeline to import SMPDB annotations from SMPDB into RGD
21.	RGD automated import pipeline
22.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23.	RGD automated import pipeline for gene-chemical interactions
24.	Sharma AK, etal., Toxicol Pathol. 2009 Oct;37(6):776-89. Epub 2009 Aug 21.
25.	Teramoto H, etal., J Biol Chem. 1996 Nov 1;271(44):27225-8.
26.	Wang Z and Thurmond DC, J Cell Sci. 2009 Apr 1;122(Pt 7):893-903.
27.	Wei L, etal., Development 2002 Apr;129(7):1705-14.
28.	Yang D, etal., Dig Dis Sci. 2017 Apr;62(4):958-967. doi: 10.1007/s10620-017-4451-z. Epub 2017 Feb 8.
29.	Zhao J, etal., Cell Signal. 2007 Apr;19(4):831-43. Epub 2006 Dec 8.
30.	Zhu X, etal., Int J Dev Neurosci. 2000 Jul-Aug;18(4-5):433-7.

Additional References at PubMed

PMID:886261	PMID:1555775	PMID:2124704	PMID:7888179	PMID:8288233	PMID:8464478	PMID:8817303	PMID:8889548	PMID:9438836	PMID:9535835	PMID:9606207	PMID:9828140
PMID:9917367	PMID:10349636	PMID:10490598	PMID:10493740	PMID:10495887	PMID:10699171	PMID:10898977	PMID:10922068	PMID:10934474	PMID:10954424	PMID:11035016	PMID:11042159
PMID:11048641	PMID:11076861	PMID:11130076	PMID:11238453	PMID:11307167	PMID:11431694	PMID:11544199	PMID:11562357	PMID:11672528	PMID:11673526	PMID:12006490	PMID:12034499
PMID:12107726	PMID:12112462	PMID:12123608	PMID:12165471	PMID:12213441	PMID:12213839	PMID:12376551	PMID:12384416	PMID:12477932	PMID:12482591	PMID:12520002	PMID:12531901
PMID:12538863	PMID:12547822	PMID:12566226	PMID:12566459	PMID:12598535	PMID:12609829	PMID:12637522	PMID:12676083	PMID:12760905	PMID:12773384	PMID:12842876	PMID:12904583
PMID:13678593	PMID:14516655	PMID:14517298	PMID:14610273	PMID:14697354	PMID:14966113	PMID:15085137	PMID:15102471	PMID:15151987	PMID:15249579	PMID:15361624	PMID:15485841
PMID:15492012	PMID:15537656	PMID:15548602	PMID:15557338	PMID:15652341	PMID:15684033	PMID:15710388	PMID:15728722	PMID:15775979	PMID:15782199	PMID:15824104	PMID:15882626
PMID:15883643	PMID:15996550	PMID:15998744	PMID:16046391	PMID:16052498	PMID:16141072	PMID:16141073	PMID:16174757	PMID:16195887	PMID:16207251	PMID:16322481	PMID:16362953
PMID:16365040	PMID:16369480	PMID:16440308	PMID:16510873	PMID:16602821	PMID:16616186	PMID:16621792	PMID:16714282	PMID:16754961	PMID:16782018	PMID:16784226	PMID:16814769
PMID:16849480	PMID:16892058	PMID:16914516	PMID:16930532	PMID:16968698	PMID:17000758	PMID:17021167	PMID:17024187	PMID:17049825	PMID:17050694	PMID:17154294	PMID:17177285
PMID:17265067	PMID:17267693	PMID:17289663	PMID:17360364	PMID:17409253	PMID:17468766	PMID:17500055	PMID:17524389	PMID:17573353	PMID:17576798	PMID:17579061	PMID:17634366
PMID:17653061	PMID:17679093	PMID:17682062	PMID:17702745	PMID:17702896	PMID:17726059	PMID:17849438	PMID:17873277	PMID:17898204	PMID:18045877	PMID:18045906	PMID:18216334
PMID:18283662	PMID:18287559	PMID:18325335	PMID:18325391	PMID:18331715	PMID:18450752	PMID:18451111	PMID:18515405	PMID:18541383	PMID:18541910	PMID:18604197	PMID:18662680
PMID:18799693	PMID:18824165	PMID:18829452	PMID:18838382	PMID:18854161	PMID:19001503	PMID:19015276	PMID:19085966	PMID:19097998	PMID:19100259	PMID:19126596	PMID:19144319
PMID:19190242	PMID:19208628	PMID:19244314	PMID:19265663	PMID:19273601	PMID:19286565	PMID:19289122	PMID:19349584	PMID:19363157	PMID:19404406	PMID:19443691	PMID:19463088
PMID:19463158	PMID:19640983	PMID:19671682	PMID:19671922	PMID:19693013	PMID:19696411	PMID:19741094	PMID:19741299	PMID:19752396	PMID:19796622	PMID:19808890	PMID:19820184
PMID:19893577	PMID:19914171	PMID:19955216	PMID:20028975	PMID:20067919	PMID:20139097	PMID:20345913	PMID:20501942	PMID:20547841	PMID:20551175	PMID:20595387	PMID:20637038
PMID:20719958	PMID:20871610	PMID:20937872	PMID:21048135	PMID:21048939	PMID:21059854	PMID:21062867	PMID:21115489	PMID:21122105	PMID:21177343	PMID:21267068	PMID:21339294
PMID:21344485	PMID:21382550	PMID:21397010	PMID:21421844	PMID:21455314	PMID:21502507	PMID:21533980	PMID:21618100	PMID:21645877	PMID:21659643	PMID:21685891	PMID:21690310
PMID:21789221	PMID:21828338	PMID:21844200	PMID:21873635	PMID:21880728	PMID:21880909	PMID:21880919	PMID:21966369	PMID:22023353	PMID:22128240	PMID:22228100	PMID:22340378
PMID:22354172	PMID:22387309	PMID:22454526	PMID:22456512	PMID:22461490	PMID:22461561	PMID:22494997	PMID:22518006	PMID:22560076	PMID:22596063	PMID:22683270	PMID:22732842
PMID:22810622	PMID:22932798	PMID:22958929	PMID:22966049	PMID:22989773	PMID:23022564	PMID:23139861	PMID:23150167	PMID:23171661	PMID:23209325	PMID:23219958	PMID:23248743
PMID:23264738	PMID:23284167	PMID:23295348	PMID:23325254	PMID:23358418	PMID:23372671	PMID:23384564	PMID:23392682	PMID:23446420	PMID:23524265	PMID:23542688	PMID:23555292
PMID:23608596	PMID:23620790	PMID:23665500	PMID:23677246	PMID:23690402	PMID:23706742	PMID:23766535	PMID:23793062	PMID:23861058	PMID:23861250	PMID:23872330	PMID:23979594
PMID:24003235	PMID:24014231	PMID:24056078	PMID:24059268	PMID:24076653	PMID:24100016	PMID:24131996	PMID:24178298	PMID:24244167	PMID:24276241	PMID:24428713	PMID:24449844
PMID:24610943	PMID:24788519	PMID:24792215	PMID:24952961	PMID:25006034	PMID:25057989	PMID:25073924	PMID:25113996	PMID:25190059	PMID:25211221	PMID:25217619	PMID:25288640
PMID:25343271	PMID:25451153	PMID:25477463	PMID:25490006	PMID:25497016	PMID:25547673	PMID:25662318	PMID:25737280	PMID:25770185	PMID:25851601	PMID:25870239	PMID:25892012
PMID:26002917	PMID:26051942	PMID:26092936	PMID:26204446	PMID:26253403	PMID:26416959	PMID:26490995	PMID:26553928	PMID:26558612	PMID:26566162	PMID:26728565	PMID:26733533
PMID:26739452	PMID:26747246	PMID:26772200	PMID:26783302	PMID:26820532	PMID:26845352	PMID:26902112	PMID:26905694	PMID:26912661	PMID:26932803	PMID:26969129	PMID:27114066
PMID:27134173	PMID:27143109	PMID:27225763	PMID:27486147	PMID:27566402	PMID:27600824	PMID:27635527	PMID:27680697	PMID:27917469	PMID:27986432	PMID:28028151	PMID:28028174
PMID:28031329	PMID:28171747	PMID:28181299	PMID:28238662	PMID:28289096	PMID:28296078	PMID:28378742	PMID:28389565	PMID:28457749	PMID:28465335	PMID:28643773	PMID:28706196
PMID:28747344	PMID:28754687	PMID:28778865	PMID:28871124	PMID:28973878	PMID:29145128	PMID:29253508	PMID:29296000	PMID:29314205	PMID:29330353	PMID:29377497	PMID:29422044
PMID:29440353	PMID:29518331	PMID:29556338	PMID:29626467	PMID:29632244	PMID:29663842	PMID:29673588	PMID:29684584	PMID:29700112	PMID:29853619	PMID:29867343	PMID:29874522
PMID:29976179	PMID:30042182	PMID:30189608	PMID:30227235	PMID:30254339	PMID:30307073	PMID:30333726	PMID:30387892	PMID:30540520	PMID:30562941	PMID:30590745	PMID:30732528
PMID:30846568	PMID:30853186	PMID:30985297	PMID:31060803	PMID:31062617	PMID:31084928	PMID:31219639	PMID:31246175	PMID:31410202	PMID:31462248	PMID:31487690	PMID:31877301
PMID:32290105	PMID:32325033	PMID:32581705	PMID:32819561	PMID:32866472

Genomics

Comparative Map Data

Cdc42
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	137,047,007 - 137,085,070 (-)	NCBI	GRCm39		mm39
GRCm38	4	137,319,696 - 137,357,759 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	137,319,696 - 137,357,720 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	136,875,611 - 136,913,652 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	4	136,591,779 - 136,608,205 (-)	NCBI			mm8
Celera	4	135,540,002 - 135,577,854 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	69.83	NCBI

CDC42
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	1	22,025,511 - 22,101,360 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	1	22,052,709 - 22,101,360 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	1	22,379,202 - 22,427,853 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	1	22,379,120 - 22,419,439 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	22,251,707 - 22,292,023 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	1	22,124,487 - 22,164,741	NCBI
Celera	1	20,702,109 - 20,742,389 (+)	NCBI
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	20,622,960 - 20,663,212 (+)	NCBI		HuRef
CHM1_1	1	22,491,651 - 22,531,931 (+)	NCBI		CHM1_1

Cdc42
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	5	149,555,069 - 149,593,239 (-)	NCBI
Rnor_6.0 Ensembl	5	155,691,390 - 155,728,300 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	5	155,690,267 - 155,728,385 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	5	159,446,154 - 159,485,163 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	156,106,123 - 156,143,040 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	5	156,116,164 - 156,153,079 (-)	NCBI
Celera	5	147,953,334 - 147,989,998 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Cdc42
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	2,255,117 - 2,299,042 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	2,255,940 - 2,299,042 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDC42
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	1	22,188,722 - 22,228,351 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	1	21,245,970 - 21,286,210 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

LOC403934
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	2	77,153,095 - 77,199,211 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	2	77,153,276 - 77,169,947 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Cdc42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936474	7,556,765 - 7,598,687 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDC42
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	80,035,122 - 80,089,233 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	80,035,034 - 80,089,243 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	74,057,184 - 74,116,824 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDC42
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	110,568,004 - 110,608,318 (-)	NCBI
ChlSab1.1 Ensembl	20	110,569,352 - 110,582,562 (-)	Ensembl

Cdc42
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624764	6,874,453 - 6,891,952 (+)	NCBI

Position Markers

BB377396

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	137,331,537 - 137,331,669	UniSTS	GRCm38
MGSCv37	4	136,887,452 - 136,887,584	UniSTS	GRCm37
Celera	4	135,551,770 - 135,551,902	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.75	UniSTS
Whitehead/MRC_RH	4	1802.48	UniSTS

RH136515

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	137,319,801 - 137,320,006	UniSTS	GRCm38
GRCm38	X	146,710,947 - 146,711,151	UniSTS	GRCm38
MGSCv37	X	143,145,490 - 143,145,694	UniSTS	GRCm37
MGSCv37	4	136,875,716 - 136,875,921	UniSTS	GRCm37
Celera	4	135,540,107 - 135,540,312	UniSTS
Celera	X	130,655,854 - 130,656,058	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.75	UniSTS

AI747189

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	137,319,945 - 137,320,024	UniSTS	GRCm38
GRCm38	4	43,797,051 - 43,797,131	UniSTS	GRCm38
MGSCv37	4	136,875,860 - 136,875,939	UniSTS	GRCm37
MGSCv37	4	43,809,923 - 43,810,003	UniSTS	GRCm37
Celera	4	135,540,251 - 135,540,330	UniSTS
Celera	4	43,826,575 - 43,826,655	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.75	UniSTS
Whitehead/MRC_RH	4	1797.84	UniSTS

RH126279

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	137,353,926 - 137,354,175	UniSTS	GRCm38
MGSCv37	4	136,909,841 - 136,910,090	UniSTS	GRCm37
Celera	4	135,573,826 - 135,574,075	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.8	UniSTS
Whitehead/MRC_RH	4	1802.48	UniSTS

Cdc42

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
MGSCv37	4	136,875,676 - 136,875,862	UniSTS	GRCm37
MGSCv37	4	136,884,502 - 136,884,693	UniSTS	GRCm37
Celera	4	135,540,067 - 135,540,253	UniSTS
Celera	4	135,548,828 - 135,549,019	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.75	UniSTS
cM Map	4	66.75	UniSTS
cM Map	4	66.75	UniSTS

UniSTS:224478

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	137,322,296 - 137,322,450	UniSTS	GRCm38
MGSCv37	4	136,878,211 - 136,878,365	UniSTS	GRCm37
Celera	4	135,542,602 - 135,542,756	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.75	UniSTS

Cdc42

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	137,328,587 - 137,328,778	UniSTS	GRCm38
MGSCv37	4	136,884,502 - 136,884,693	UniSTS	GRCm37
Celera	4	135,548,828 - 135,549,019	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.75	UniSTS

Cdc42

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	137,319,761 - 137,319,947	UniSTS	GRCm38
MGSCv37	4	136,875,676 - 136,875,862	UniSTS	GRCm37
Celera	4	135,540,067 - 135,540,253	UniSTS
Cytogenetic Map	4	D3	UniSTS
cM Map	4	66.75	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156183778	Mouse
1357895	Ctrcts_m	cataract severity (mouse)			Not determined		4	45709925	138615442	Mouse
26884437	Sklq13_m	skull length QTL 13, 16 week (mouse)					4	57700000	155600000	Mouse
25314312	Syncl2_m	synaptonemal complex length 2 (mouse)					4	65800000	146500000	Mouse
26884445	Sklq7_m	skull length QTL 7, 10 week (mouse)					4	68100000	150800000	Mouse
4141549	W10q10_m	weight 10 weeks QTL 10 (mouse)			Not determined			89063832	140740892	Mouse
4141093	W3q17_m	weight 3 weeks QTL 17 (mouse)			Not determined			89063832	140740892	Mouse
4141623	W6q13_m	weight 6 weeks QTL 13 (mouse)			Not determined			89063832	140740892	Mouse
1357529	Lvrq8_m	liver weight QTL 8 (mouse)			Not determined		4	89063832	140740892	Mouse
39128212	Lwq21_m	liver weight QTL 21 (mouse)					4	89063832	140740892	Mouse
1301823	Bmd7_m	bone mineral density 7 (mouse)			Not determined		4	89063832	151570093	Mouse
13208562	Wght7_m	weight 7 (mouse)					4	91000000	148000000	Mouse
1301815	Sles2_m	systemic lupus erythmatosus suppressor 2 (mouse)			Not determined		4	95069342	150592401	Mouse
15039377	Bw45_m	body weight QTL 45 (mouse)					4	105812001	139812001	Mouse
15039378	Adip30_m	adiposity 30 (mouse)					4	105812001	139812001	Mouse
15039382	Ltgq7_m	liver triglyceride QTL 7 (mouse)					4	105812001	139812001	Mouse
12910794	Pwbwq8_m	post-weaning body weight QTL 8 (mouse)					4	105978113	141706527	Mouse
12910797	Pwgrq4_m	pre-weaning growth rate QTL 4 (mouse)					4	105978113	141706527	Mouse
12910808	Pwbwq9_m	post-weaning body weight QTL 9 (mouse)					4	105978113	141706527	Mouse
12910813	Pwbwq4_m	pre-weaning body weight QTL 4 (mouse)					4	105978113	141706527	Mouse
1357800	Tgq3_m	triglyceride QTL 3 (mouse)			Not determined		4	107161300	141161387	Mouse
1300663	Start2_m	startle response 2 (mouse)			Not determined		4	107371164	141371360	Mouse
1300809	Ccrs2_m	corpus callosum hemisphere surface size 2 (mouse)			Not determined		4	107371164	141371360	Mouse
1300781	Lith8_m	lithogenic gene 8 (mouse)			Not determined		4	107371164	141371360	Mouse
1301382	Arvm2_m	autoimmune renal vasculitis 2 (mouse)			Not determined		4	107897771	141897963	Mouse
10755520	Rbc1_m	red blood cell count 1 (mouse)					4	108583899	142583899	Mouse
10755522	Hgb1_m	hemoglobin 1 (mouse)					4	108583899	142583899	Mouse
10755521	Hct1_m	hematocrit 1 (mouse)					4	108583899	142583899	Mouse
1300839	Dyscalc2_m	dystrophic cardiac calcinosis 2 (mouse)			Not determined		4	111115258	145115487	Mouse
1300743	Skull6_m	skull morphology 6 (mouse)			Not determined		4	111115258	145115487	Mouse
15039385	Mvlq3_m	macrovesicular liver lesion QTL 3 (mouse)					4	112288593	146288593	Mouse
4141001	Tgq17_m	triglyceride QTL 17 (mouse)			Not determined			112629696	146629696	Mouse
10047132	Albq19_m	albuminuria QTL 19 (mouse)			Not determined		4	112930596	146930596	Mouse
4142493	Femwf13_m	femur work to failure 13 (mouse)			Not determined			116427367	150427471	Mouse
1302078	Sluc21_m	susceptibility to lung cancer 21 (mouse)			Not determined		4	117673830	151673964	Mouse
14746982	Manh56_m	mandible shape 56 (mouse)					4	118088606	152088606	Mouse
1301964	Bw8q2_m	body weight at 8 weeks QTL 2 (mouse)			Not determined		4	120137122	154137225	Mouse
1302102	Bis1_m	beta-carboline-induced seizures 1 (mouse)			Not determined		4	120137122	154137225	Mouse
13503348	Bntq18_m	bone traits QTL 18 (mouse)					4	120890537	154890684	Mouse
10412210	Cypr6_m	cytokine production 6 (mouse)			Not determined		4	120890537	154890684	Mouse
1300803	Sluc6_m	susceptibility to lung cancer 6 (mouse)			Not determined		4	120946694	154946840	Mouse
4141180	Ssic1_m	susceptibility to small intestinal cancer 1 (mouse)			Not determined			120946694	154946840	Mouse
4142061	Chlq16_m	circulating hormone level QTL 16 (mouse)			Not determined		4	121615338	155615442	Mouse
1301452	Elsgp1_m	elevated serum gp70 1 (mouse)			Not determined		4	121615338	155615442	Mouse
10043985	Stheal12_m	soft tissue heal 12 (mouse)			Not determined		4	121615338	155615442	Mouse
27226757	Femd1_m	femur midshaft diameter 1, 5 week (mouse)					4	124100000	144600000	Mouse
4141065	Shali2_m	survival time to hyperoxic acute lung injury 2 (mouse)			Not determined			124161300	141845481	Mouse
1300917	Gasa1_m	gastritis type A susceptibility locus 1 (mouse)			Not determined		4	124161300	142711450	Mouse
1302149	Tlsr2_m	thymic lymphoma suppressor region 2 (mouse)			Not determined		4	124371164	142504390	Mouse
1301525	Lmb1_m	lupus in MRL and B6 F2 cross (mouse)			Not determined		4	124371164	150592401	Mouse
10755531	Lymph3_m	lymphocyte differential 3 (mouse)					4	124826172	156508116	Mouse
1301982	Pltiq1_m	phospholipid transfer protein inducibility QTL 1 (mouse)			Not determined		4	124893970	156508116	Mouse
1300858	Tafat_m	tally ho associated mesenteric fat pad weight (mouse)			Not determined		4	124893970	156508116	Mouse
4142139	Adip12_m	adiposity 12 (mouse)			Not determined		4	124893970	156508116	Mouse
1300933	Cdcs9_m	cytokine deficiency colitis susceptibility 9 (mouse)			Not determined		4	125504302	156508116	Mouse
10045620	Heal22_m	wound healing/regeneration 22 (mouse)			Not determined		4	125504302	156508116	Mouse
1300621	Tpnr1_m	thermal pain response 1 (mouse)			Not determined		4	125504302	156508116	Mouse
11533916	Mts1_m	mammary tumor susceptibility 1 (mouse)					4	125562755	156508116	Mouse
4142481	Gct1_m	granulosa cell tumorigenesis 1 (mouse)			Not determined		4	128057656	156508116	Mouse
10043996	Gct5_m	granulosa cell tumorigenesis 5 (mouse)			Not determined		4	128057656	156508116	Mouse
1301584	Lrdg2_m	light induced retinal degeneration 2 (mouse)			Not determined		4	129572018	151570093	Mouse
4141154	Nba1_m	New Zealand Black autoimmunity 1 (mouse)			Not determined			131923413	141151964	Mouse
1300874	Gasa2_m	gastritis type A susceptibility locus 2 (mouse)			Not determined		4	132926037	156508116	Mouse
4142082	Psds2_m	psoriasis-like skin disease severity 2 (mouse)			Not determined		4	133427367	137890684	Mouse
1301267	Bcmd2_m	B cell maturation defect 2 (mouse)			Not determined		4	133427367	150704994	Mouse
4142077	Ignpq2_m	IgA nephropathy QTL 2 (mouse)			Not determined		4	133592276	156508116	Mouse
1301108	Scon2_m	sucrose consumption 2 (mouse)			Not determined		4	134569994	156508116	Mouse
1300537	Ap3q_m	alcohol preference 3 QTL (mouse)			Not determined		4	134569994	156508116	Mouse
4141779	Ssrq8_m	stress response QTL 8 (mouse)			Not determined			137148689	137890684	Mouse
12050091	Shm2_m	sperm head morphology 2 (mouse)					4	137148689	138615442	Mouse

miRNA Target Status

Confirmed Target Of

miRNA Gene	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
Mir133a-2	mmu-miR-133a-3p	Mirtarbase	external_info	Luciferase reporter assay//Microarray//Northern bl	Functional MTI	17468766
Mir330	mmu-miR-330-5p	OncomiRDB	external_info	NA	NA	23337504
Mir1a-1	mmu-miR-1a-3p	Mirtarbase	external_info	Luciferase reporter assay//qRT-PCR//Western blot	Functional MTI	21690310
Mir1a-2	mmu-miR-1a-3p	Mirtarbase	external_info	Luciferase reporter assay//qRT-PCR//Western blot	Functional MTI	21690310
Mir124a-2	mmu-miR-124-3p	Mirtarbase	external_info	Western blot	Functional MTI	18619591
Mir137	mmu-miR-137-5p	OncomiRDB	external_info	NA	NA	23178712
Mir137	mmu-miR-137-5p	OncomiRDB	external_info	NA	NA	20473940

Predicted Target Of

	Summary Value
Count of predictions:	717
Count of miRNA genes:	425
Interacting mature miRNAs:	491
Transcripts:	ENSMUST00000030417, ENSMUST00000051477
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001243769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_009861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253139	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030253142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036163618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036163619	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK003098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK051543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK081384	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK144216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK145659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK150563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK151726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK153564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK154870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK159470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK166281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168503	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK168820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK169805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK181967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK183308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK208829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK211726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK213611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK214706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK218916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL645468	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC064792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE685696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF467211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD353254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD551112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L11318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L78075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M79301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U37720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U76960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000030417 ⟹ ENSMUSP00000030417

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	4	137,321,762 - 137,357,699 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000051477 ⟹ ENSMUSP00000054634

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	4	137,319,696 - 137,357,720 (-)	Ensembl

RefSeq Acc Id:

NM_001243769 ⟹ NP_001230698

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,049,073 - 137,085,070 (-)	NCBI
GRCm38	4	137,321,762 - 137,357,759 (-)	NCBI
Celera	4	135,540,002 - 135,577,876 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

TTCCGCGGGCACCCAACCATGCGTCCCCTGCGTGCTGACGTCAGGCGCGTGCCCCTGTCCGGCA
GCCGAGGAGGCCCCGCGCAGTGCTGCCAACGCCCCGGCGGAGAAGCTGAGGACAAGATCTAATT
TGAAATATTAAAAGTGGATACAAAACTGTTTCCGAAATGCAGACAATTAAGTGTGTTGTTGTTG
GTGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTCCCATCGGA
ATATGTACCAACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATACACT
CTTGGACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGACTACGACCGCTAAGTTATCCAC
AGACAGATGTTTTTCTAGTATGTTTCTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGA
AAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAA
ATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAGCCTATTA
CTCCAGAGACTGCTGAAAAGCTGGCGCGGGATCTGAAGGCTGTCAAGTATGTGGAGTGCTCTGC
CCTCACACAGAGAGGTCTGAAGAATGTGTTTGATGAGGCTATCCTAGCTGCCCTCGAGCCTCCG
GAAACTCAACCCAAAAGGAAGTGCTGTATATTCTAAACCGTTTTCTCCTTCCCCTCTTTGCTGC
TGCTTCCTGTCCCACTACTGTAGAAAGATCATTTAAAACAAAGGAATAAAACCATCCTGTTTGA
AAGCCTCTGCGTCTTCTTACTCAACACTTTAGAGCAAACTCTGTATTCATTTTTGATCATGAAT
GCAATTAGAATATTTTTTGTGATCAGTAGTCACGTTAGACTTGTTTAACTTTCTGCTGCTTGAG
TTGCCTGATGCTCAGAGCTTTTGGTTTGAATTATTGCAAAAGGGAATGTGGTCTGGCATTAAGA
ATGATGTCTTCTTGGAGAAAATAAGAGTTTTAACGCTTCTAGATGTTAGTTCTAGATGGAGAAA
GCATCACTAAACATCATTTTACTCTTACTGATTGTTAATTGTAATTGCATGACACACTATGAAA
AGGGTTGGCTTGCTAGTAGAGTGTAATGGGGAAGGGAGGATTCTCATGGTTTTCCTGTGTGCAG
TGAAACTTTTGTGTTGCTCTTGCTTTGGCTGTTTGTGCCGTAGGTGGAGTGTTTGTCATTCTGG
GATGGGGAAGGTATCCATGTATCTGCTTACTGCTTTATGAGTTCATTGTTACACATTATCTCCT
AATCCTAGCATCCATTTAACAATTGACTTAAGATTTGCTGATATTGAAATGTAAAGCTACTGCC
TTTATATTTTCCTGCTTTTGATTCTATTGTTGTGAGGGAAACATACAGTTGTGGTTATCTTTAC
ATTTTGAAATTAAAAATATACAATTGTTTGTATAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_009861 ⟹ NP_033991

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,047,007 - 137,085,070 (-)	NCBI
GRCm38	4	137,319,696 - 137,357,759 (-)	ENTREZGENE
MGSCv37	4	136,875,611 - 136,913,652 (-)	RGD
Celera	4	135,540,002 - 135,577,876 (-)	ENTREZGENE
cM Map	4		ENTREZGENE

Sequence:

show sequence

TTCCGCGGGCACCCAACCATGCGTCCCCTGCGTGCTGACGTCAGGCGCGTGCCCCTGTCCGGCA
GCCGAGGAGGCCCCGCGCAGTGCTGCCAACGCCCCGGCGGAGAAGCTGAGGACAAGATCTAATT
TGAAATATTAAAAGTGGATACAAAACTGTTTCCGAAATGCAGACAATTAAGTGTGTTGTTGTTG
GTGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCCTACACAACAAACAAATTCCCATCGGA
ATATGTACCAACTGTTTTTGACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATACACT
CTTGGACTTTTTGATACTGCAGGGCAAGAGGATTATGACAGACTACGACCGCTAAGTTATCCAC
AGACAGATGTTTTTCTAGTATGTTTCTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGA
AAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAA
ATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAGCCTATTA
CTCCAGAGACTGCTGAAAAGCTGGCGCGGGATCTGAAGGCTGTCAAGTATGTGGAGTGCTCTGC
CCTCACACAGAAAGGCCTAAAGAATGTGTTTGATGAAGCAATATTGGCTGCCCTGGAGCCTCCA
GAACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGAACGCATCTCCAGAGCCCTTTCTGCACAG
CTGGTGTTGTCGTCATACTAAAAGCAATGTTTAAATCAAACTAAAGATTAAAAATTAAAATTTG
TTTCTGCAATAATGACAAACGCCCTGCACCTACCCACATGCACTCATGTGAGACAAGGCCCATT
AGTATGGCCCCTCCTTGCCCTTCCAGTAATAGTTAATTTTGAATAATTATGTATTGTCTGAAAA
GCAATGAGTGCTAGTTTTTGTTTTCTTTGTTTAAAAAAAAAAACAAAAATCCCCACAAACGTTT
GTTGTTTTTTTGTTTAAAAGCAAGCATGCTTGTATTGACTGTAACAGACTAATTCAGATTGTCA
AAGCTGCTCCCTGGTTCCATTTTGGAGAGTAATCTGGGGCATCTTCGTGTCTTCTGTTTTGTTT
TGTTTTGTTTTTCCTCAACCCTTCTCTCCTTTTGGGGTGTGTATGGGGTTGTTTCTTAGACTTG
TATTTTAAAATTTGTTAACCATAGGACAGCCTGTGGGGAGGAGGACAGAGTATTTCCACATTCC
ACTCCCTAGGTCTAGTTTAGCAAACGTGTCCCCACCTGGTGCTCTTAGGAAGGAGTATAGAAAC
GCCTCGATTAACAACGTATTCCTTCTTGAAAGTTGCCTTTTCTCTCCACCTCTGAGTGGGTCCA
GTCTGTGATGGAACTCATGAAGGTGGGTGGACGCTGTCTCGCCCCTCTTTCTAGGATGCACTCT
ATATGTGACTGTGACTTTCAAGGGTATTTGTTTGCCATTTCCTGATTTAGGGAGGGGAATAATT
TCTAACTTCTTTCATTGATAAATGAAAAGTATTGCACCTTTGAAATACACCAAATGGATTGAGT
TCCTAATTAAAAAAAGTTCTTTTGCCCCTGTCAGTCATTTTCTTACATGCTTAGCACAGATTCA
CAACTCACTGTGTAGTGTTCCTAGATTCAGCTGAAGACCTGGTACCTAGGGTTCCTAACGGGAT
GGTGTTAGGAAACACATCATGGCTGATGATTGCCATCTCCTTTCAGGTGATGAGGTCACAGGCC
TGCTTCCTTAAGAAGCTATGAGCATGGGGTGGGGAGCATACTTTTAACCAACATGGGGACCAGT
CAGGGCTATCCCCTTTTTTCTTCCATGCCTATGAGGAACCTTTGAACAACTGGCTGAAGCTTTC
GCAAGAAAAATGGCGAGAGCCTCATGATTCTTTATAAGTGTTAATAGAGACTTTATCAGATTAT
TTTGTTTGCAGGTTCCAGTTTTTAAAAAATGTTTAGATAATCTCCTTCCCCAGTCCTGATCTTG
TGGATTCGTTAGTGCCGAACCAATGCTTTCTTGTGTCTCAACTCTTTGTATATGAATTCTTTTC
AGATGTATTAAACAAACAAAACCCTTCACAAGTGAAAAA

hide sequence

RefSeq Acc Id:

XM_030253139 ⟹ XP_030108999

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,047,011 - 137,083,998 (-)	NCBI
GRCm38	4	137,319,700 - 137,346,610 (-)	NCBI

Sequence:

show sequence

CTGTGAGAGGGAGATAAAGAGGAGCCTGCTTTCAAAGAGCATAACCTAGAATGGATGAAAGTGG
GGATATGGCTCCCTTCTGATGCCATTGCCATAGAGGACTTAGAGTTTTGTCATGAGATTTGTAA
CCTTGCTGCTTTCTGTCCACCTCAACTGAGGACAAGATCTAATTTGAAATATTAAAAGTGGATA
CAAAACTGTTTCCGAAATGCAGACAATTAAGTGTGTTGTTGTTGGTGATGGTGCTGTTGGTAAA
ACATGTCTCCTGATATCCTACACAACAAACAAATTCCCATCGGAATATGTACCAACTGTTTTTG
ACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATACACTCTTGGACTTTTTGATACTGC
AGGGCAAGAGGATTATGACAGACTACGACCGCTAAGTTATCCACAGACAGATGTTTTTCTAGTA
TGTTTCTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAA
CTCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCC
CTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAGCCTATTACTCCAGAGACTGCTGAAAAG
CTGGCGCGGGATCTGAAGGCTGTCAAGTATGTGGAGTGCTCTGCCCTCACACAGAAAGGCCTAA
AGAATGTGTTTGATGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAG
GTGTGTGCTGCTATGAACGCATCTCCAGAGCCCTTTCTGCACAGCTGGTGTTGTCGTCATACTA
AAAGCAATGTTTAAATCAAACTAAAGATTAAAAATTAAAATTTGTTTCTGCAATAATGACAAAC
GCCCTGCACCTACCCACATGCACTCATGTGAGACAAGGCCCATTAGTATGGCCCCTCCTTGCCC
TTCCAGTAATAGTTAATTTTGAATAATTATGTATTGTCTGAAAAGCAATGAGTGCTAGTTTTTG
TTTTCTTTGTTTAAAAAAAAAAACAAAAATCCCCACAAACGTTTGTTGTTTTTTTGTTTAAAAG
CAAGCATGCTTGTATTGACTGTAACAGACTAATTCAGATTGTCAAAGCTGCTCCCTGGTTCCAT
TTTGGAGAGTAATCTGGGGCATCTTCGTGTCTTCTGTTTTGTTTTGTTTTGTTTTTCCTCAACC
CTTCTCTCCTTTTGGGGTGTGTATGGGGTTGTTTCTTAGACTTGTATTTTAAAATTTGTTAACC
ATAGGACAGCCTGTGGGGAGGAGGACAGAGTATTTCCACATTCCACTCCCTAGGTCTAGTTTAG
CAAACGTGTCCCCACCTGGTGCTCTTAGGAAGGAGTATAGAAACGCCTCGATTAACAACGTATT
CCTTCTTGAAAGTTGCCTTTTCTCTCCACCTCTGAGTGGGTCCAGTCTGTGATGGAACTCATGA
AGGTGGGTGGACGCTGTCTCGCCCCTCTTTCTAGGATGCACTCTATATGTGACTGTGACTTTCA
AGGGTATTTGTTTGCCATTTCCTGATTTAGGGAGGGGAATAATTTCTAACTTCTTTCATTGATA
AATGAAAAGTATTGCACCTTTGAAATACACCAAATGGATTGAGTTCCTAATTAAAAAAAGTTCT
TTTGCCCCTGTCAGTCATTTTCTTACATGCTTAGCACAGATTCACAACTCACTGTGTAGTGTTC
CTAGATTCAGCTGAAGACCTGGTACCTAGGGTTCCTAACGGGATGGTGTTAGGAAACACATCAT
GGCTGATGATTGCCATCTCCTTTCAGGTGATGAGGTCACAGGCCTGCTTCCTTAAGAAGCTATG
AGCATGGGGTGGGGAGCATACTTTTAACCAACATGGGGACCAGTCAGGGCTATCCCCTTTTTTC
TTCCATGCCTATGAGGAACCTTTGAACAACTGGCTGAAGCTTTCGCAAGAAAAATGGCGAGAGC
CTCATGATTCTTTATAAGTGTTAATAGAGACTTTATCAGATTATTTTGTTTGCAGGTTCCAGTT
TTTAAAAAATGTTTAGATAATCTCCTTCCCCAGTCCTGATCTTGTGGATTCGTTAGTGCCGAAC
CAATGCTTTCTTGTGTCTCAACTCTTTGTATATGAATTCTTTTCAGATGTATTAAACAAACAAA
ACCCTTCACAA

hide sequence

RefSeq Acc Id:

XM_030253140 ⟹ XP_030109000

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,047,011 - 137,084,949 (-)	NCBI
GRCm38	4	137,319,700 - 137,356,818 (-)	NCBI

Sequence:

show sequence

GATTACGTCATCGCAGCATAAGGGGACAAGATCTAATTTGAAATATTAAAAGTGGATACAAAAC
TGTTTCCGAAATGCAGACAATTAAGTGTGTTGTTGTTGGTGATGGTGCTGTTGGTAAAACATGT
CTCCTGATATCCTACACAACAAACAAATTCCCATCGGAATATGTACCAACTGTTTTTGACAACT
ATGCAGTCACAGTTATGATTGGTGGAGAGCCATACACTCTTGGACTTTTTGATACTGCAGGGCA
AGAGGATTATGACAGACTACGACCGCTAAGTTATCCACAGACAGATGTTTTTCTAGTATGTTTC
TCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACC
ACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTAC
TATTGAGAAACTTGCCAAGAACAAACAGAAGCCTATTACTCCAGAGACTGCTGAAAAGCTGGCG
CGGGATCTGAAGGCTGTCAAGTATGTGGAGTGCTCTGCCCTCACACAGAAAGGCCTAAAGAATG
TGTTTGATGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCAGGTGTGT
GCTGCTATGAACGCATCTCCAGAGCCCTTTCTGCACAGCTGGTGTTGTCGTCATACTAAAAGCA
ATGTTTAAATCAAACTAAAGATTAAAAATTAAAATTTGTTTCTGCAATAATGACAAACGCCCTG
CACCTACCCACATGCACTCATGTGAGACAAGGCCCATTAGTATGGCCCCTCCTTGCCCTTCCAG
TAATAGTTAATTTTGAATAATTATGTATTGTCTGAAAAGCAATGAGTGCTAGTTTTTGTTTTCT
TTGTTTAAAAAAAAAAACAAAAATCCCCACAAACGTTTGTTGTTTTTTTGTTTAAAAGCAAGCA
TGCTTGTATTGACTGTAACAGACTAATTCAGATTGTCAAAGCTGCTCCCTGGTTCCATTTTGGA
GAGTAATCTGGGGCATCTTCGTGTCTTCTGTTTTGTTTTGTTTTGTTTTTCCTCAACCCTTCTC
TCCTTTTGGGGTGTGTATGGGGTTGTTTCTTAGACTTGTATTTTAAAATTTGTTAACCATAGGA
CAGCCTGTGGGGAGGAGGACAGAGTATTTCCACATTCCACTCCCTAGGTCTAGTTTAGCAAACG
TGTCCCCACCTGGTGCTCTTAGGAAGGAGTATAGAAACGCCTCGATTAACAACGTATTCCTTCT
TGAAAGTTGCCTTTTCTCTCCACCTCTGAGTGGGTCCAGTCTGTGATGGAACTCATGAAGGTGG
GTGGACGCTGTCTCGCCCCTCTTTCTAGGATGCACTCTATATGTGACTGTGACTTTCAAGGGTA
TTTGTTTGCCATTTCCTGATTTAGGGAGGGGAATAATTTCTAACTTCTTTCATTGATAAATGAA
AAGTATTGCACCTTTGAAATACACCAAATGGATTGAGTTCCTAATTAAAAAAAGTTCTTTTGCC
CCTGTCAGTCATTTTCTTACATGCTTAGCACAGATTCACAACTCACTGTGTAGTGTTCCTAGAT
TCAGCTGAAGACCTGGTACCTAGGGTTCCTAACGGGATGGTGTTAGGAAACACATCATGGCTGA
TGATTGCCATCTCCTTTCAGGTGATGAGGTCACAGGCCTGCTTCCTTAAGAAGCTATGAGCATG
GGGTGGGGAGCATACTTTTAACCAACATGGGGACCAGTCAGGGCTATCCCCTTTTTTCTTCCAT
GCCTATGAGGAACCTTTGAACAACTGGCTGAAGCTTTCGCAAGAAAAATGGCGAGAGCCTCATG
ATTCTTTATAAGTGTTAATAGAGACTTTATCAGATTATTTTGTTTGCAGGTTCCAGTTTTTAAA
AAATGTTTAGATAATCTCCTTCCCCAGTCCTGATCTTGTGGATTCGTTAGTGCCGAACCAATGC
TTTCTTGTGTCTCAACTCTTTGTATATGAATTCTTTTCAGATGTATTAAACAAACAAAACCCTT
CACAA

hide sequence

RefSeq Acc Id:

XM_030253141 ⟹ XP_030109001

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,047,011 - 137,083,998 (-)	NCBI
GRCm38	4	137,319,700 - 137,346,610 (-)	NCBI

Sequence:

show sequence

CTGTGAGAGGGAGATAAAGAGGAGCCTGCTTTCAAAGAGCATAACCTAGAATGGATGAAAGTGG
GGATATGGCTCCCTTCTGATGCCATTGCCATAGAGGACTTAGAGTTTTGTCATGAGATTTGTAA
CCTTGCTGCTTTCTGTCCACCTCAACTGAGGACAAGATCTAATTTGAAATATTAAAAGTGGATA
CAAAACTGTTTCCGAAATGCAGACAATTAAGTGTGTTGTTGTTGGTGATGGTGCTGTTGGTAAA
ACATGTCTCCTGATATCCTACACAACAAACAAATTCCCATCGGAATATGTACCAACTGTTTTTG
ACAACTATGCAGTCACAGTTATGATTGGTGGAGAGCCATACACTCTTGGACTTTTTGATACTGC
AGGGCAAGAGGATTATGACAGACTACGACCGCTAAGTTATCCACAGACAGATGTTTTTCTAGTA
TGTTTCTCAGTGGTCTCTCCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAA
CTCACCACTGTCCAAAGACTCCTTTCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCC
CTCTACTATTGAGAAACTTGCCAAGAACAAACAGAAGCCTATTACTCCAGAGACTGCTGAAAAG
CTGGCGCGGGATCTGAAGGCTGTCAAGTATGTGGAGTGCTCTGCCCTCACACAGAGAGGTCTGA
AGAATGTGTTTGATGAGGCTATCCTAGCTGCCCTCGAGCCTCCGGAAACTCAACCCAAAAGGAA
GTGCTGTATATTCTAAACCGTTTTCTCCTTCCCCTCTTTGCTGCTGCTTCCTGTCCCACTACTG
TAGAAAGATCATTTAAAACAAAGGAATAAAACCATCCTGTTTGAAAGCCTCTGCGTCTTCTTAC
TCAACACTTTAGAGCAAACTCTGTATTCATTTTTGATCATGAATGCAATTAGAATATTTTTTGT
GATCAGTAGTCACGTTAGACTTGTTTAACTTTCTGCTGCTTGAGTTGCCTGATGCTCAGAGCTT
TTGGTTTGAATTATTGCAAAAGGGAATGTGGTCTGGCATTAAGAATGATGTCTTCTTGGAGAAA
ATAAGAGTTTTAACGCTTCTAGATGTTAGTTCTAGATGGAGAAAGCATCACTAAACATCATTTT
ACTCTTACTGATTGTTAATTGTAATTGCATGACACACTATGAAAAGGGTTGGCTTGCTAGTAGA
GTGTAATGGGGAAGGGAGGATTCTCATGGTTTTCCTGTGTGCAGTGAAACTTTTGTGTTGCTCT
TGCTTTGGCTGTTTGTGCCGTAGGTGGAGTGTTTGTCATTCTGGGATGGGGAAGGTATCCATGT
ATCTGCTTACTGCTTTATGAGTTCATTGTTACACATTATCTCCTAATCCTAGCATCCATTTAAC
AATTGACTTAAGATTTGCTGATATTGAAATGTAAAGCTACTGCCTTTATATTTTCCTGCTTTTG
ATTCTATTGTTGTGAGGGAAACATACAGTTGTGGTTATCTTTACATTTTGAAATTAAAAATATA
CAATTGTTTGTATAAACGCCTGGTGAAGCTTTATTCCTATTGCAAGAACTGGCTCTAACCTCAC
TCTTGTATCAGGTACCCACCTCTGCTTCTTTGACTCCCCTTGGCTTTGTCTAATTAGTGGGATA
AAGGGAGTTCAAGGTGATTATATTTACAGCTGCCATACCCTCGCTGTCCACTCCCTGCCTTCCA
TACAACATGGATGCTGCCCGGATGTATTCTCTATTTCACATGCTGCCGCTCCATTTGAATGCAG
AACTGCTTCCCATGTTCCCTATGGTAAATGTTTTAGCTACACATTACACAACTCATCGAATGAG
CAAATGACATGTGCTTTTTGCTTCTTGTGATATATATTGGTTTGCAAAAAGTATCTCAGAGGAC
CACTTATGAAATCTGCTCATCTGTGCCAGCATTGCTGAATCTCTCCTGTGCCCTGACAAGACAA
CCGAGTGAAGCAAAATTATTAGGTTGGGTTTCAGGGTTATTAATGTCTTTGGGGTTTGACTGTT
TTAAACATGAACTCCAGTTCTGTTGTGATACTGAAAATCAGATTGCCCATTTCTTCTTTCTACC
CCTTTTCAGAAAGGCCTAAAGAATGTGTTTGATGAAGCAATATTGGCTGCCCTGGAGCCTCCAG
AACCGAAGAAGAGCCGCAGGTGTGTGCTGCTATGAACGCATCTCCAGAGCCCTTTCTGCACAGC
TGGTGTTGTCGTCATACTAAAAGCAATGTTTAAATCAAACTAAAGATTAAAAATTAAAATTTGT
TTCTGCAATAATGACAAACGCCCTGCACCTACCCACATGCACTCATGTGAGACAAGGCCCATTA
GTATGGCCCCTCCTTGCCCTTCCAGTAATAGTTAATTTTGAATAATTATGTATTGTCTGAAAAG
CAATGAGTGCTAGTTTTTGTTTTCTTTGTTTAAAAAAAAAAACAAAAATCCCCACAAACGTTTG
TTGTTTTTTTGTTTAAAAGCAAGCATGCTTGTATTGACTGTAACAGACTAATTCAGATTGTCAA
AGCTGCTCCCTGGTTCCATTTTGGAGAGTAATCTGGGGCATCTTCGTGTCTTCTGTTTTGTTTT
GTTTTGTTTTTCCTCAACCCTTCTCTCCTTTTGGGGTGTGTATGGGGTTGTTTCTTAGACTTGT
ATTTTAAAATTTGTTAACCATAGGACAGCCTGTGGGGAGGAGGACAGAGTATTTCCACATTCCA
CTCCCTAGGTCTAGTTTAGCAAACGTGTCCCCACCTGGTGCTCTTAGGAAGGAGTATAGAAACG
CCTCGATTAACAACGTATTCCTTCTTGAAAGTTGCCTTTTCTCTCCACCTCTGAGTGGGTCCAG
TCTGTGATGGAACTCATGAAGGTGGGTGGACGCTGTCTCGCCCCTCTTTCTAGGATGCACTCTA
TATGTGACTGTGACTTTCAAGGGTATTTGTTTGCCATTTCCTGATTTAGGGAGGGGAATAATTT
CTAACTTCTTTCATTGATAAATGAAAAGTATTGCACCTTTGAAATACACCAAATGGATTGAGTT
CCTAATTAAAAAAAGTTCTTTTGCCCCTGTCAGTCATTTTCTTACATGCTTAGCACAGATTCAC
AACTCACTGTGTAGTGTTCCTAGATTCAGCTGAAGACCTGGTACCTAGGGTTCCTAACGGGATG
GTGTTAGGAAACACATCATGGCTGATGATTGCCATCTCCTTTCAGGTGATGAGGTCACAGGCCT
GCTTCCTTAAGAAGCTATGAGCATGGGGTGGGGAGCATACTTTTAACCAACATGGGGACCAGTC
AGGGCTATCCCCTTTTTTCTTCCATGCCTATGAGGAACCTTTGAACAACTGGCTGAAGCTTTCG
CAAGAAAAATGGCGAGAGCCTCATGATTCTTTATAAGTGTTAATAGAGACTTTATCAGATTATT
TTGTTTGCAGGTTCCAGTTTTTAAAAAATGTTTAGATAATCTCCTTCCCCAGTCCTGATCTTGT
GGATTCGTTAGTGCCGAACCAATGCTTTCTTGTGTCTCAACTCTTTGTATATGAATTCTTTTCA
GATGTATTAAACAAACAAAACCCTTCACAA

hide sequence

RefSeq Acc Id:

XM_030253142 ⟹ XP_030109002

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,047,011 - 137,084,949 (-)	NCBI
GRCm38	4	137,319,700 - 137,357,638 (-)	NCBI

Sequence:

show sequence

CGGGGCCCGAGAAGCCTCCCTGCGGGAGCGTCTTCTGCGCCGCCCGGTCCCCTTCGCGTGTCCC
CCCCCCCCCCGTCCTCTCTCGGTTCTCGAGGATGCTCGCGGGCAGGGGCATCCCGGTGCTTGCG
GGCGGTGGGCCGCGAGGGAGGGCTTGCCGGGGTCGCGTGCGCCCGCCGGCCCGGGTTCTGAGGG
AAGCGAGGCGGGGTCGCGGCGAGGCTTAGGGCTGGAATGGCGGCGCGGCGCGGCCGGGGATGGC
GGCGGCCGAGGGCACAGCCCGGCCGAGCTGTCAGCGGCGGCGGCGGCGGCGGCGGCGGCGAGAG
GACCGGGCACACCCATCCCACCCGCTCCCCTCCCCCTCCGGCCGCCCGCGGGCTCCGAGGCCCC
GGGGCGCGGGGTGGGAGACGCCCGGTCCGGACCGGGGTCGGAGGCCGGGGGCTGTCTCTCCGTT
GTGGGCCTCGACTTCCTGCTTCCCCGGCCCCGCCACGGACGCGTTGCGGCTGGCGGGGGAGGGG
AGCGGAACTGCGGCCGCAGGGCCGGGCCGGGCCGGGGCCGAGGTGACGGACCGGGCGGCTCTGC
GCCTGCGCCCCTCGGCGGTCTCCAGCCCCGCGCCGTGTCCTCTCCTGCCCCGCGGCTCCCGGGG
CTCTCCTGCCGGGGCCGGCCTCTTTGCCATCCGGGACCTGCCTAAGCACCTCCCGAAACCCCGC
CTGGCCACTTACTCAGTTCCTCGTTCCTAGCAGGAAATTTTCTTTGTCGGTTATTATTACTATT
TTGTAAATTCCTCTTTCCACCCCTTTAACTCTGGGAGAAATTCAGTGTGGAAGATTACGTCATC
GCAGCATAAGGGGACAAGATCTAATTTGAAATATTAAAAGTGGATACAAAACTGTTTCCGAAAT
GCAGACAATTAAGTGTGTTGTTGTTGGTGATGGTGCTGTTGGTAAAACATGTCTCCTGATATCC
TACACAACAAACAAATTCCCATCGGAATATGTACCAACTGTTTTTGACAACTATGCAGTCACAG
TTATGATTGGTGGAGAGCCATACACTCTTGGACTTTTTGATACTGCAGGGCAAGAGGATTATGA
CAGACTACGACCGCTAAGTTATCCACAGACAGATGTTTTTCTAGTATGTTTCTCAGTGGTCTCT
CCATCCTCATTTGAAAATGTGAAAGAAAAGTGGGTGCCTGAGATAACTCACCACTGTCCAAAGA
CTCCTTTCTTGCTTGTTGGGACCCAAATTGATCTCAGAGATGACCCCTCTACTATTGAGAAACT
TGCCAAGAACAAACAGAAGCCTATTACTCCAGAGACTGCTGAAAAGCTGGCGCGGGATCTGAAG
GCTGTCAAGTATGTGGAGTGCTCTGCCCTCACACAGAGAGGTCTGAAGAATGTGTTTGATGAGG
CTATCCTAGCTGCCCTCGAGCCTCCGGAAACTCAACCCAAAAGGAAGTGCTGTATATTCTAAAC
CGTTTTCTCCTTCCCCTCTTTGCTGCTGCTTCCTGTCCCACTACTGTAGAAAGATCATTTAAAA
CAAAGGAATAAAACCATCCTGTTTGAAAGCCTCTGCGTCTTCTTACTCAACACTTTAGAGCAAA
CTCTGTATTCATTTTTGATCATGAATGCAATTAGAATATTTTTTGTGATCAGTAGTCACGTTAG
ACTTGTTTAACTTTCTGCTGCTTGAGTTGCCTGATGCTCAGAGCTTTTGGTTTGAATTATTGCA
AAAGGGAATGTGGTCTGGCATTAAGAATGATGTCTTCTTGGAGAAAATAAGAGTTTTAACGCTT
CTAGATGTTAGTTCTAGATGGAGAAAGCATCACTAAACATCATTTTACTCTTACTGATTGTTAA
TTGTAATTGCATGACACACTATGAAAAGGGTTGGCTTGCTAGTAGAGTGTAATGGGGAAGGGAG
GATTCTCATGGTTTTCCTGTGTGCAGTGAAACTTTTGTGTTGCTCTTGCTTTGGCTGTTTGTGC
CGTAGGTGGAGTGTTTGTCATTCTGGGATGGGGAAGGTATCCATGTATCTGCTTACTGCTTTAT
GAGTTCATTGTTACACATTATCTCCTAATCCTAGCATCCATTTAACAATTGACTTAAGATTTGC
TGATATTGAAATGTAAAGCTACTGCCTTTATATTTTCCTGCTTTTGATTCTATTGTTGTGAGGG
AAACATACAGTTGTGGTTATCTTTACATTTTGAAATTAAAAATATACAATTGTTTGTATAAACG
CCTGGTGAAGCTTTATTCCTATTGCAAGAACTGGCTCTAACCTCACTCTTGTATCAGGTACCCA
CCTCTGCTTCTTTGACTCCCCTTGGCTTTGTCTAATTAGTGGGATAAAGGGAGTTCAAGGTGAT
TATATTTACAGCTGCCATACCCTCGCTGTCCACTCCCTGCCTTCCATACAACATGGATGCTGCC
CGGATGTATTCTCTATTTCACATGCTGCCGCTCCATTTGAATGCAGAACTGCTTCCCATGTTCC
CTATGGTAAATGTTTTAGCTACACATTACACAACTCATCGAATGAGCAAATGACATGTGCTTTT
TGCTTCTTGTGATATATATTGGTTTGCAAAAAGTATCTCAGAGGACCACTTATGAAATCTGCTC
ATCTGTGCCAGCATTGCTGAATCTCTCCTGTGCCCTGACAAGACAACCGAGTGAAGCAAAATTA
TTAGGTTGGGTTTCAGGGTTATTAATGTCTTTGGGGTTTGACTGTTTTAAACATGAACTCCAGT
TCTGTTGTGATACTGAAAATCAGATTGCCCATTTCTTCTTTCTACCCCTTTTCAGAAAGGCCTA
AAGAATGTGTTTGATGAAGCAATATTGGCTGCCCTGGAGCCTCCAGAACCGAAGAAGAGCCGCA
GGTGTGTGCTGCTATGAACGCATCTCCAGAGCCCTTTCTGCACAGCTGGTGTTGTCGTCATACT
AAAAGCAATGTTTAAATCAAACTAAAGATTAAAAATTAAAATTTGTTTCTGCAATAATGACAAA
CGCCCTGCACCTACCCACATGCACTCATGTGAGACAAGGCCCATTAGTATGGCCCCTCCTTGCC
CTTCCAGTAATAGTTAATTTTGAATAATTATGTATTGTCTGAAAAGCAATGAGTGCTAGTTTTT
GTTTTCTTTGTTTAAAAAAAAAAACAAAAATCCCCACAAACGTTTGTTGTTTTTTTGTTTAAAA
GCAAGCATGCTTGTATTGACTGTAACAGACTAATTCAGATTGTCAAAGCTGCTCCCTGGTTCCA
TTTTGGAGAGTAATCTGGGGCATCTTCGTGTCTTCTGTTTTGTTTTGTTTTGTTTTTCCTCAAC
CCTTCTCTCCTTTTGGGGTGTGTATGGGGTTGTTTCTTAGACTTGTATTTTAAAATTTGTTAAC
CATAGGACAGCCTGTGGGGAGGAGGACAGAGTATTTCCACATTCCACTCCCTAGGTCTAGTTTA
GCAAACGTGTCCCCACCTGGTGCTCTTAGGAAGGAGTATAGAAACGCCTCGATTAACAACGTAT
TCCTTCTTGAAAGTTGCCTTTTCTCTCCACCTCTGAGTGGGTCCAGTCTGTGATGGAACTCATG
AAGGTGGGTGGACGCTGTCTCGCCCCTCTTTCTAGGATGCACTCTATATGTGACTGTGACTTTC
AAGGGTATTTGTTTGCCATTTCCTGATTTAGGGAGGGGAATAATTTCTAACTTCTTTCATTGAT
AAATGAAAAGTATTGCACCTTTGAAATACACCAAATGGATTGAGTTCCTAATTAAAAAAAGTTC
TTTTGCCCCTGTCAGTCATTTTCTTACATGCTTAGCACAGATTCACAACTCACTGTGTAGTGTT
CCTAGATTCAGCTGAAGACCTGGTACCTAGGGTTCCTAACGGGATGGTGTTAGGAAACACATCA
TGGCTGATGATTGCCATCTCCTTTCAGGTGATGAGGTCACAGGCCTGCTTCCTTAAGAAGCTAT
GAGCATGGGGTGGGGAGCATACTTTTAACCAACATGGGGACCAGTCAGGGCTATCCCCTTTTTT
CTTCCATGCCTATGAGGAACCTTTGAACAACTGGCTGAAGCTTTCGCAAGAAAAATGGCGAGAG
CCTCATGATTCTTTATAAGTGTTAATAGAGACTTTATCAGATTATTTTGTTTGCAGGTTCCAGT
TTTTAAAAAATGTTTAGATAATCTCCTTCCCCAGTCCTGATCTTGTGGATTCGTTAGTGCCGAA
CCAATGCTTTCTTGTGTCTCAACTCTTTGTATATGAATTCTTTTCAGATGTATTAAACAAACAA
AACCCTTCACAA

hide sequence

RefSeq Acc Id:

XM_036163618 ⟹ XP_036019511

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,047,011 - 137,083,998 (-)	NCBI

RefSeq Acc Id:

XM_036163619 ⟹ XP_036019512

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	137,047,011 - 137,083,998 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001230698	(Get FASTA)	NCBI Sequence Viewer
	NP_033991	(Get FASTA)	NCBI Sequence Viewer
	XP_030108999	(Get FASTA)	NCBI Sequence Viewer
	XP_030109000	(Get FASTA)	NCBI Sequence Viewer
	XP_030109001	(Get FASTA)	NCBI Sequence Viewer
	XP_030109002	(Get FASTA)	NCBI Sequence Viewer
	XP_036019511	(Get FASTA)	NCBI Sequence Viewer
	XP_036019512	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA37410	(Get FASTA)	NCBI Sequence Viewer
	AAB40051	(Get FASTA)	NCBI Sequence Viewer
	AAC00028	(Get FASTA)	NCBI Sequence Viewer
	AAH64792	(Get FASTA)	NCBI Sequence Viewer
	AAK14822	(Get FASTA)	NCBI Sequence Viewer
	BAB22563	(Get FASTA)	NCBI Sequence Viewer
	BAC34669	(Get FASTA)	NCBI Sequence Viewer
	BAC35825	(Get FASTA)	NCBI Sequence Viewer
	BAE25778	(Get FASTA)	NCBI Sequence Viewer
	BAE26572	(Get FASTA)	NCBI Sequence Viewer
	BAE30100	(Get FASTA)	NCBI Sequence Viewer
	BAE30644	(Get FASTA)	NCBI Sequence Viewer
	BAE32098	(Get FASTA)	NCBI Sequence Viewer
	BAE32891	(Get FASTA)	NCBI Sequence Viewer
	BAE35111	(Get FASTA)	NCBI Sequence Viewer
	BAE38678	(Get FASTA)	NCBI Sequence Viewer
	BAE39325	(Get FASTA)	NCBI Sequence Viewer
	BAE39489	(Get FASTA)	NCBI Sequence Viewer
	BAE39663	(Get FASTA)	NCBI Sequence Viewer
	BAE40000	(Get FASTA)	NCBI Sequence Viewer
	BAE40049	(Get FASTA)	NCBI Sequence Viewer
	BAE40062	(Get FASTA)	NCBI Sequence Viewer
	BAE40222	(Get FASTA)	NCBI Sequence Viewer
	BAE40595	(Get FASTA)	NCBI Sequence Viewer
	BAE40647	(Get FASTA)	NCBI Sequence Viewer
	BAE40902	(Get FASTA)	NCBI Sequence Viewer
	BAE41001	(Get FASTA)	NCBI Sequence Viewer
	BAE41379	(Get FASTA)	NCBI Sequence Viewer
	EDL29921	(Get FASTA)	NCBI Sequence Viewer
	P60766	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_033991 ⟸ NM_009861
- Peptide Label:	isoform 1
- UniProtKB:	P60766 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK LAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL hide sequence

RefSeq Acc Id:	NP_001230698 ⟸ NM_001243769
- Peptide Label:	isoform 2
- UniProtKB:	P60766 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK LAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPPETQPKRKCCIF hide sequence

RefSeq Acc Id:	XP_030109002 ⟸ XM_030253142
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_030109000 ⟸ XM_030253140
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_030108999 ⟸ XM_030253139
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_030109001 ⟸ XM_030253141
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSMUSP00000054634 ⟸ ENSMUST00000051477

RefSeq Acc Id:

ENSMUSP00000030417 ⟸ ENSMUST00000030417

RefSeq Acc Id:	XP_036019511 ⟸ XM_036163618
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_036019512 ⟸ XM_036163619
- Peptide Label:	isoform X2

Promoters

RGD ID:

6835062

Promoter ID:

MM_KWN:40245

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Kidney, MEF_B6

Transcripts:

AK040105_A430061O12RIK, UC008VIY.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	4	136,892,526 - 136,893,026 (-)	MPROMDB

RGD ID:

6885144

Promoter ID:

EPDNEW_M6023

Type:

initiation region

Name:

Cdc42_1

Description:

Mus musculus cell division cycle 42 , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	137,357,677 - 137,357,737	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:106211	AgrOrtholog
Ensembl Genes	ENSMUSG00000006699	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000030417	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000054634	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000030417	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000051477	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	Cdc42	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTP-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Small_GTPase_Rho	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:12540	UniProtKB/Swiss-Prot
MGD	MGI:106211	ENTREZGENE
NCBI Gene	12540	ENTREZGENE
Pfam	Ras	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cdc42	PhenoGen
PROSITE	RHO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs	small_GTP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	CDC42_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3UL78_MOUSE	UniProtKB/TrEMBL
	Q99JI7_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	A2A9U6	UniProtKB/Swiss-Prot
	P21181	UniProtKB/Swiss-Prot
	P25763	UniProtKB/Swiss-Prot
	Q3THZ7	UniProtKB/Swiss-Prot
	Q3TJK6	UniProtKB/Swiss-Prot
	Q545V0	UniProtKB/Swiss-Prot
	Q6P201	UniProtKB/Swiss-Prot
	Q8BQ51	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-10	Cdc42	cell division cycle 42	Cdc42	cell division cycle 42 homolog (S. cerevisiae)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)

Imported Annotations - PID (archival)