Zfp46 (zinc finger protein 46) - Rat Genome Database

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Gene: Zfp46 (zinc finger protein 46) Mus musculus
Analyze
Symbol: Zfp46
Name: zinc finger protein 46
RGD ID: 1321578
MGI Page MGI
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including male reproductive system; nervous system; and urinary system. Orthologous to human ZNF436 (zinc finger protein 436).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI426962; Mlz-4; Zfp-4; Zfp-46; zinc finger protein 436; zinc finger protein MLZ-4; Znf436
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm18137   Gm18158  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,011,479 - 136,021,163 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,011,994 - 136,021,253 (+)EnsemblGRCm39 Ensembl
GRCm384136,284,168 - 136,293,942 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,284,683 - 136,293,942 (+)EnsemblGRCm38mm10GRCm38
MGSCv374135,841,984 - 135,849,857 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364135,558,145 - 135,566,018 (+)NCBIMGSCv36mm8
Celera4134,484,155 - 134,492,060 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map468.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:7590745   PMID:8444344   PMID:8535085   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:15368895   PMID:16141072   PMID:16141073   PMID:18069898  
PMID:18218630   PMID:18287559   PMID:20059953   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22988430  


Genomics

Comparative Map Data
Zfp46
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394136,011,479 - 136,021,163 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4136,011,994 - 136,021,253 (+)EnsemblGRCm39 Ensembl
GRCm384136,284,168 - 136,293,942 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4136,284,683 - 136,293,942 (+)EnsemblGRCm38mm10GRCm38
MGSCv374135,841,984 - 135,849,857 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364135,558,145 - 135,566,018 (+)NCBIMGSCv36mm8
Celera4134,484,155 - 134,492,060 (+)NCBICelera
Cytogenetic Map4D3NCBI
cM Map468.34NCBI
ZNF436
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38123,359,448 - 23,369,836 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl123,359,448 - 23,369,836 (-)EnsemblGRCh38hg38GRCh38
GRCh37123,685,941 - 23,696,329 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36123,558,528 - 23,568,944 (-)NCBINCBI36Build 36hg18NCBI36
Build 34123,431,773 - 23,440,185NCBI
Celera122,015,593 - 22,026,011 (-)NCBICelera
Cytogenetic Map1p36.12NCBI
HuRef121,937,991 - 21,948,419 (-)NCBIHuRef
CHM1_1123,798,637 - 23,809,049 (-)NCBICHM1_1
T2T-CHM13v2.0123,192,614 - 23,203,014 (-)NCBIT2T-CHM13v2.0
Zfp46
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85153,802,887 - 153,813,388 (+)NCBIGRCr8
mRatBN7.25148,519,398 - 148,529,903 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5148,520,855 - 148,529,459 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5151,217,298 - 151,227,560 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05152,991,588 - 153,001,850 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05152,973,595 - 152,983,857 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05154,644,099 - 154,655,132 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5154,650,632 - 154,655,132 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05158,411,338 - 158,422,371 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45155,035,876 - 155,040,376 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15155,041,591 - 155,047,564 (+)NCBI
Celera5146,926,032 - 146,930,532 (+)NCBICelera
Cytogenetic Map5q36NCBI
Znf436
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554523,364,768 - 3,374,887 (-)NCBIChiLan1.0ChiLan1.0
ZNF436
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21203,571,844 - 203,581,910 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11202,673,145 - 202,684,333 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0122,551,125 - 22,562,496 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1123,539,693 - 23,550,464 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl123,539,693 - 23,550,464 (-)Ensemblpanpan1.1panPan2
ZNF436
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1276,049,169 - 76,058,428 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl276,049,313 - 76,057,277 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha272,556,014 - 72,563,328 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0276,607,643 - 76,616,913 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl276,608,687 - 76,616,905 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1273,429,678 - 73,438,941 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0274,437,416 - 74,446,678 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0275,442,235 - 75,451,510 (+)NCBIUU_Cfam_GSD_1.0
Znf436
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505842,761,457 - 42,771,049 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364748,588,850 - 8,594,276 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364748,585,776 - 8,596,116 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF436
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl681,250,629 - 81,262,351 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1681,250,203 - 81,262,346 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF436
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120109,303,945 - 109,313,609 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20109,305,453 - 109,311,111 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660337,012,538 - 7,023,058 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf436
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247648,000,086 - 8,009,229 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247648,001,219 - 8,010,735 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp46
310 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1623
Count of miRNA genes:738
Interacting mature miRNAs:947
Transcripts:ENSMUST00000069195, ENSMUST00000130223, ENSMUST00000130658, ENSMUST00000132649, ENSMUST00000144217
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105705794139705794Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105705794139705794Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124055093141572792Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
10755521Hct1_mhematocrit 1 (mouse)4108477692142477692Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131650724140879275Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107264957141265153Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107264957141265153Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108477692142477692Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105835310141433838Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124264957142230960Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105835310141433838Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108477692142477692Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129465811136864536Mouse
15039378Adip30_madiposity 30 (mouse)4105705794139705794Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107055093141055180Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105835310141433838Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105835310141433838Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107264957141265153Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107791564141791756Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4142082Psds2_mpsoriasis-like skin disease severity 2 (mouse)Not determined4133154678137617995Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124055093142438020Mouse

Markers in Region
AI426962  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384136,293,601 - 136,293,739UniSTSGRCm38
MGSCv374135,849,516 - 135,849,654UniSTSGRCm37
Celera4134,491,719 - 134,491,857UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.9UniSTS
Whitehead/MRC_RH41802.48UniSTS
UniSTS:224455  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384136,293,266 - 136,293,454UniSTSGRCm38
MGSCv374135,849,181 - 135,849,369UniSTSGRCm37
Celera4134,491,386 - 134,491,572UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.9UniSTS
Zfp46  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384136,293,240 - 136,293,445UniSTSGRCm38
MGSCv374135,849,155 - 135,849,360UniSTSGRCm37
Celera4134,491,360 - 134,491,563UniSTS
Cytogenetic Map4D3UniSTS
cM Map465.9UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001370651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001425037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001425038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK051031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB665308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU611884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB520797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M98502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000069195   ⟹   ENSMUSP00000070216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4136,013,378 - 136,021,253 (+)Ensembl
GRCm38.p6 Ensembl4136,286,067 - 136,293,942 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130223   ⟹   ENSMUSP00000115774
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4136,012,086 - 136,017,395 (+)Ensembl
GRCm38.p6 Ensembl4136,284,775 - 136,290,084 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130658   ⟹   ENSMUSP00000116237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4136,013,415 - 136,017,559 (+)Ensembl
GRCm38.p6 Ensembl4136,286,104 - 136,290,248 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4136,012,380 - 136,013,786 (+)Ensembl
GRCm38.p6 Ensembl4136,285,069 - 136,286,475 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144217   ⟹   ENSMUSP00000118495
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4136,011,994 - 136,017,638 (+)Ensembl
GRCm38.p6 Ensembl4136,284,683 - 136,290,327 (+)Ensembl
RefSeq Acc Id: NM_001356308   ⟹   NP_001343237
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394136,011,980 - 136,021,163 (+)NCBI
GRCm384136,284,676 - 136,293,942 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001370651   ⟹   NP_001357580
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394136,011,980 - 136,021,163 (+)NCBI
GRCm384136,284,676 - 136,293,942 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001425037   ⟹   NP_001411966
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394136,013,400 - 136,021,163 (+)NCBI
RefSeq Acc Id: NM_001425038   ⟹   NP_001411967
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394136,011,980 - 136,021,163 (+)NCBI
RefSeq Acc Id: NM_009557   ⟹   NP_033583
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394136,013,400 - 136,021,163 (+)NCBI
GRCm384136,286,067 - 136,293,942 (+)NCBI
MGSCv374135,841,984 - 135,849,857 (+)RGD
Celera4134,484,155 - 134,492,060 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538728   ⟹   XP_006538791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394136,011,479 - 136,021,163 (+)NCBI
GRCm384136,284,168 - 136,293,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036163984   ⟹   XP_036019877
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394136,011,479 - 136,021,163 (+)NCBI
Sequence:
RefSeq Acc Id: NP_033583   ⟸   NM_009557
- Peptide Label: isoform 1
- UniProtKB: Q69ZC6 (UniProtKB/Swiss-Prot),   Q03309 (UniProtKB/Swiss-Prot),   Q8BQC2 (UniProtKB/Swiss-Prot),   Q8BPP0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006538791   ⟸   XM_006538728
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001343237   ⟸   NM_001356308
- Peptide Label: isoform 1
- UniProtKB: Q8BPP0 (UniProtKB/Swiss-Prot),   Q69ZC6 (UniProtKB/Swiss-Prot),   Q03309 (UniProtKB/Swiss-Prot),   Q8BQC2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001357580   ⟸   NM_001370651
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000115774   ⟸   ENSMUST00000130223
RefSeq Acc Id: ENSMUSP00000116237   ⟸   ENSMUST00000130658
RefSeq Acc Id: ENSMUSP00000118495   ⟸   ENSMUST00000144217
RefSeq Acc Id: ENSMUSP00000070216   ⟸   ENSMUST00000069195
RefSeq Acc Id: XP_036019877   ⟸   XM_036163984
- Peptide Label: isoform X2
- UniProtKB: Q8BPP0 (UniProtKB/Swiss-Prot),   Q69ZC6 (UniProtKB/Swiss-Prot),   Q03309 (UniProtKB/Swiss-Prot),   Q8BQC2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411967   ⟸   NM_001425038
- Peptide Label: isoform 1
- UniProtKB: Q8BQC2 (UniProtKB/Swiss-Prot),   Q8BPP0 (UniProtKB/Swiss-Prot),   Q69ZC6 (UniProtKB/Swiss-Prot),   Q03309 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001411966   ⟸   NM_001425037
- Peptide Label: isoform 2
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BPP0-F1-model_v2 AlphaFold Q8BPP0 1-452 view protein structure

Promoters
RGD ID:6836709
Promoter ID:MM_KWN:40204
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung,   MEF_B6
Transcripts:OTTMUST00000022879,   OTTMUST00000022880,   OTTMUST00000022881
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364135,840,426 - 135,840,926 (+)MPROMDB
RGD ID:6836711
Promoter ID:MM_KWN:40205
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000097841,   OTTMUST00000022877,   OTTMUST00000022878
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364135,841,041 - 135,842,282 (+)MPROMDB
RGD ID:6847867
Promoter ID:MM_ACW:36095
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:ZFP46.BSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364135,846,036 - 135,846,792 (+)MPROMDB
RGD ID:6885112
Promoter ID:EPDNEW_M6007
Type:initiation region
Name:Zfp46_1
Description:Mus musculus zinc finger protein 46 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384136,286,098 - 136,286,158EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:99192 AgrOrtholog
Ensembl Genes ENSMUSG00000051351 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000069195 ENTREZGENE
  ENSMUST00000069195.5 UniProtKB/Swiss-Prot
  ENSMUST00000130223.8 UniProtKB/TrEMBL
  ENSMUST00000130658.2 UniProtKB/TrEMBL
  ENSMUST00000144217.8 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:22704 UniProtKB/Swiss-Prot
MGD MGI:99192 ENTREZGENE
NCBI Gene 22704 ENTREZGENE
PANTHER IP01201P-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 746-RELATED UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp46 PhenoGen
PRINTS ZINCFINGER UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AW47_MOUSE UniProtKB/TrEMBL
  A2AW48_MOUSE UniProtKB/TrEMBL
  A2AW49_MOUSE UniProtKB/TrEMBL
  Q03309 ENTREZGENE
  Q562F8_MOUSE UniProtKB/TrEMBL
  Q69ZC6 ENTREZGENE
  Q8BPP0 ENTREZGENE
  Q8BQC2 ENTREZGENE
  Q923E2_MOUSE UniProtKB/TrEMBL
  ZN436_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q03309 UniProtKB/Swiss-Prot
  Q69ZC6 UniProtKB/Swiss-Prot
  Q8BQC2 UniProtKB/Swiss-Prot