Lzic (leucine zipper and CTNNBIP1 domain containing) - Rat Genome Database

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Gene: Lzic (leucine zipper and CTNNBIP1 domain containing) Mus musculus
Analyze
Symbol: Lzic
Name: leucine zipper and CTNNBIP1 domain containing
RGD ID: 1319495
MGI Page MGI
Description: Predicted to enable beta-catenin binding activity. Orthologous to human LZIC (leucine zipper and CTNNBIP1 domain containing).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810030J04Rik; AW047580; leucine zipper and CTNNBIP1 domain-containing protein; leucine zipper and ICAT homologous domain-containing protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,569,642 - 149,581,952 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,569,686 - 149,581,125 (+)EnsemblGRCm39 Ensembl
GRCm384149,485,185 - 149,503,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,485,229 - 149,496,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,859,442 - 148,870,777 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,329,133 - 148,340,468 (+)NCBIMGSCv36mm8
Celera4151,748,745 - 151,760,219 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Gene expression profiling of alpha-radiation-induced rat osteosarcomas: identification of dysregulated genes involved in radiation-induced tumorigenesis of bone. Daino K, etal., Int J Cancer. 2009 Aug 1;125(3):612-20.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:15932753   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21267068   PMID:21677750  


Genomics

Comparative Map Data
Lzic
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394149,569,642 - 149,581,952 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4149,569,686 - 149,581,125 (+)EnsemblGRCm39 Ensembl
GRCm384149,485,185 - 149,503,516 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4149,485,229 - 149,496,668 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,859,442 - 148,870,777 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364148,329,133 - 148,340,468 (+)NCBIMGSCv36mm8
Celera4151,748,745 - 151,760,219 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map479.53NCBI
LZIC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3819,922,118 - 9,943,391 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl19,922,113 - 9,943,407 (-)EnsemblGRCh38hg38GRCh38
GRCh3719,982,176 - 10,003,449 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3619,912,363 - 9,925,413 (-)NCBINCBI36Build 36hg18NCBI36
Build 3419,924,043 - 9,937,092NCBI
Celera19,100,817 - 9,113,859 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef19,145,513 - 9,158,279 (-)NCBIHuRef
CHM1_119,978,518 - 9,991,643 (-)NCBICHM1_1
T2T-CHM13v2.019,465,032 - 9,486,296 (-)NCBIT2T-CHM13v2.0
Lzic
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85165,211,359 - 165,224,569 (+)NCBIGRCr8
mRatBN7.25159,928,260 - 159,941,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,920,439 - 159,939,685 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5162,644,932 - 162,656,942 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05164,465,039 - 164,477,045 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05164,421,401 - 164,433,407 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05166,430,305 - 166,443,485 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5166,430,400 - 166,442,284 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05170,076,617 - 170,089,776 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45166,567,412 - 166,579,423 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15166,577,599 - 166,589,610 (+)NCBI
Celera5158,197,959 - 158,209,967 (+)NCBICelera
Cytogenetic Map5q36NCBI
Lzic
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554863,655,812 - 3,666,828 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554863,655,745 - 3,666,828 (+)NCBIChiLan1.0ChiLan1.0
LZIC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21218,275,464 - 218,292,730 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11216,921,837 - 216,938,351 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v018,698,579 - 8,712,867 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.119,930,074 - 9,942,374 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl19,928,998 - 9,942,490 (-)Ensemblpanpan1.1panPan2
LZIC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,110,854 - 63,122,488 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl563,113,191 - 63,122,750 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,126,153 - 63,137,847 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,337,691 - 63,349,210 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl563,337,345 - 63,349,048 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1563,358,603 - 63,370,114 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,198,129 - 63,209,799 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0563,601,922 - 63,613,447 (-)NCBIUU_Cfam_GSD_1.0
Lzic
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505833,363,906 - 33,376,857 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366233,851,208 - 3,862,281 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366233,851,208 - 3,862,521 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LZIC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl670,259,151 - 70,271,955 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1670,261,447 - 70,271,710 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LZIC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120121,823,745 - 121,832,699 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20121,823,328 - 121,835,152 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605425,751,195 - 25,765,942 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lzic
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248182,591,508 - 2,606,016 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248182,591,415 - 2,605,914 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:524
Count of miRNA genes:352
Interacting mature miRNAs:401
Transcripts:ENSMUST00000030842, ENSMUST00000124413, ENSMUST00000138464, ENSMUST00000141293, ENSMUST00000146427
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse

Markers in Region
AW047580  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384149,496,250 - 149,496,334UniSTSGRCm38
MGSCv374148,870,359 - 148,870,443UniSTSGRCm37
Celera4151,759,801 - 151,759,885UniSTS
Cytogenetic Map4E2UniSTS
Whitehead/MRC_RH41926.46UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030253763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK007657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL606973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW047580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY146654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN455726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU302290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ058008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000030842   ⟹   ENSMUSP00000030842
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,569,751 - 149,581,125 (+)Ensembl
GRCm38.p6 Ensembl4149,485,294 - 149,496,668 (+)Ensembl
Ensembl Acc Id: ENSMUST00000124413   ⟹   ENSMUSP00000116150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,569,686 - 149,572,579 (+)Ensembl
GRCm38.p6 Ensembl4149,485,229 - 149,488,122 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138464
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,569,697 - 149,570,198 (+)Ensembl
GRCm38.p6 Ensembl4149,485,240 - 149,485,741 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141293   ⟹   ENSMUSP00000119294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,569,688 - 149,572,607 (+)Ensembl
GRCm38.p6 Ensembl4149,485,231 - 149,488,150 (+)Ensembl
Ensembl Acc Id: ENSMUST00000146427
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4149,569,790 - 149,570,460 (+)Ensembl
GRCm38.p6 Ensembl4149,485,333 - 149,486,003 (+)Ensembl
RefSeq Acc Id: NM_001356322   ⟹   NP_001343251
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,569,686 - 149,581,125 (+)NCBI
GRCm384149,485,229 - 149,496,668 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026963   ⟹   NP_081239
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,569,723 - 149,581,125 (+)NCBI
GRCm384149,485,266 - 149,496,668 (+)NCBI
MGSCv374148,859,442 - 148,870,777 (+)RGD
Celera4151,748,745 - 151,760,219 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017320382   ⟹   XP_017175871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,569,708 - 149,581,952 (+)NCBI
GRCm384149,485,251 - 149,503,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253760   ⟹   XP_030109620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,569,642 - 149,581,907 (+)NCBI
GRCm384149,485,185 - 149,496,658 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253762   ⟹   XP_030109622
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,569,642 - 149,581,907 (+)NCBI
GRCm384149,485,185 - 149,503,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030253763   ⟹   XP_030109623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,569,706 - 149,581,952 (+)NCBI
GRCm384149,485,254 - 149,503,516 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164403   ⟹   XP_036020296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394149,569,686 - 149,581,952 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081239   ⟸   NM_026963
- UniProtKB: Q9D8V3 (UniProtKB/Swiss-Prot),   Q8K3C3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175871   ⟸   XM_017320382
- Peptide Label: isoform X2
- UniProtKB: Q9D8V3 (UniProtKB/Swiss-Prot),   Q8K3C3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030109622   ⟸   XM_030253762
- Peptide Label: isoform X2
- UniProtKB: Q8K3C3 (UniProtKB/Swiss-Prot),   Q9D8V3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030109620   ⟸   XM_030253760
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001343251   ⟸   NM_001356322
- UniProtKB: Q8K3C3 (UniProtKB/Swiss-Prot),   Q9D8V3 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030109623   ⟸   XM_030253763
- Peptide Label: isoform X2
- UniProtKB: Q8K3C3 (UniProtKB/Swiss-Prot),   Q9D8V3 (UniProtKB/Swiss-Prot)
Ensembl Acc Id: ENSMUSP00000116150   ⟸   ENSMUST00000124413
Ensembl Acc Id: ENSMUSP00000030842   ⟸   ENSMUST00000030842
Ensembl Acc Id: ENSMUSP00000119294   ⟸   ENSMUST00000141293
RefSeq Acc Id: XP_036020296   ⟸   XM_036164403
- Peptide Label: isoform X2
- UniProtKB: Q8K3C3 (UniProtKB/Swiss-Prot),   Q9D8V3 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K3C3-F1-model_v2 AlphaFold Q8K3C3 1-190 view protein structure

Promoters
RGD ID:6835609
Promoter ID:MM_KWN:40881
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000105693,   ENSMUST00000119921,   OTTMUST00000023867,   OTTMUST00000023868,   OTTMUST00000023898,   OTTMUST00000023899,   OTTMUST00000023900,   OTTMUST00000023901,   OTTMUST00000023902,   OTTMUST00000024268
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364148,858,771 - 148,859,472 (+)MPROMDB
RGD ID:6885568
Promoter ID:EPDNEW_M6235
Type:initiation region
Name:Lzic_1
Description:Mus musculus leucine zipper and CTNNBIP1 domain containing ,transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384149,485,295 - 149,485,355EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916401 AgrOrtholog
Ensembl Genes ENSMUSG00000028990 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000030842 ENTREZGENE
  ENSMUST00000030842.8 UniProtKB/Swiss-Prot
  ENSMUST00000124413.8 UniProtKB/TrEMBL
  ENSMUST00000141293.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.490 UniProtKB/Swiss-Prot
InterPro CTNNBIP1/LZIC UniProtKB/TrEMBL
  ICAT_dom UniProtKB/Swiss-Prot
  ICAT_sf UniProtKB/Swiss-Prot
  LZIC UniProtKB/Swiss-Prot
KEGG Report mmu:69151 UniProtKB/Swiss-Prot
MGD MGI:1916401 ENTREZGENE
NCBI Gene 69151 ENTREZGENE
PANTHER BETA-CATENIN-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  BETA-CATENIN-INTERACTING PROTEIN 1 UniProtKB/TrEMBL
  PROTEIN LZIC UniProtKB/Swiss-Prot
  PROTEIN LZIC UniProtKB/Swiss-Prot
Pfam ICAT UniProtKB/Swiss-Prot
PhenoGen Lzic PhenoGen
Superfamily-SCOP SSF81730 UniProtKB/Swiss-Prot
UniProt B1AS03_MOUSE UniProtKB/TrEMBL
  B1AS04_MOUSE UniProtKB/TrEMBL
  LZIC_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q9D8V3 ENTREZGENE
UniProt Secondary Q9D8V3 UniProtKB/Swiss-Prot