4930456L15Rik (RIKEN cDNA 4930456L15 gene) - Rat Genome Database

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Gene: 4930456L15Rik (RIKEN cDNA 4930456L15 gene) Mus musculus
Analyze
Symbol: 4930456L15Rik
Name: RIKEN cDNA 4930456L15 gene
RGD ID: 5686244
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394103,148,156 - 103,169,029 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4103,148,156 - 103,169,029 (+)EnsemblGRCm39 Ensembl
GRCm384103,290,959 - 103,311,832 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4103,290,959 - 103,311,832 (+)EnsemblGRCm38mm10GRCm38
MGSCv374102,963,564 - 102,984,437 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364102,788,891 - 102,809,764 (+)NCBIMGSCv36mm8
Celera4101,648,712 - 101,669,636 (+)NCBICelera
Cytogenetic Map4C6NCBI
cM Map447.57NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930456L15RikMousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930456L15RikMousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
4930456L15RikMousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  



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Variants in 4930456L15Rik
1461 total Variants

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:56
Interacting mature miRNAs:57
Transcripts:ENSMUST00000145577
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 82 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse

1 to 10 of 82 rows





RefSeq Transcripts NR_045887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK015480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL772338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000145577
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4103,148,156 - 103,169,029 (+)Ensembl
GRCm38.p6 Ensembl4103,290,959 - 103,311,832 (+)Ensembl
Ensembl Acc Id: ENSMUST00000316804
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4103,148,156 - 103,155,414 (+)Ensembl
RefSeq Acc Id: NR_045887
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394103,148,156 - 103,169,029 (+)NCBI
GRCm384103,290,959 - 103,311,832 (+)ENTREZGENE
Celera4101,648,712 - 101,669,636 (+)ENTREZGENE
cM Map4 ENTREZGENE
Sequence:
RGD ID:6884020
Promoter ID:EPDNEW_M5460
Type:single initiation site
Name:4930456L15Rik_1
Description:Mus musculus RIKEN cDNA 4930456L15 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384103,290,988 - 103,291,048EPDNEW


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000078618 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000145577 ENTREZGENE
MGD MGI:1918900 ENTREZGENE
NCBI Gene 4930456L15Rik ENTREZGENE
PhenoGen 4930456L15Rik PhenoGen
RNAcentral URS000075B44B RNACentral