Gm572 (predicted gene 572) - Rat Genome Database

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Gene: Gm572 (predicted gene 572) Mus musculus
Analyze
Symbol: Gm572
Name: predicted gene 572
RGD ID: 1617356
MGI Page MGI
Description: Acts upstream of or within determination of left/right symmetry and heart development. Is expressed in several structures, including alimentary system; genitourinary system; and trachea. Used to study Kartagener syndrome; primary ciliary dyskinesia; and visceral heterotaxy. Orthologous to human C1orf127 (chromosome 1 open reading frame 127).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: b2b1167C; b2b1167Clo; hypothetical protein LOC230909; uncharacterized protein C1orf127 homolog; uncharacterized protein LOC230909
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,727,774 - 148,761,562 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,727,774 - 148,756,029 (+)EnsemblGRCm39 Ensembl
GRCm384148,643,317 - 148,677,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,643,317 - 148,671,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,017,426 - 148,045,681 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364147,487,117 - 147,515,372 (+)NCBIMGSCv36mm8
Celera4150,904,993 - 150,933,325 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.82NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12040188   PMID:12466851   PMID:14610273   PMID:18799693   PMID:21873635   PMID:24194600   PMID:25807483   PMID:29997285   PMID:38355793  


Genomics

Comparative Map Data
Gm572
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,727,774 - 148,761,562 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,727,774 - 148,756,029 (+)EnsemblGRCm39 Ensembl
GRCm384148,643,317 - 148,677,105 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,643,317 - 148,671,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv374148,017,426 - 148,045,681 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364147,487,117 - 147,515,372 (+)NCBIMGSCv36mm8
Celera4150,904,993 - 150,933,325 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.82NCBI
C1orf127
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38110,946,475 - 10,982,076 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl110,946,471 - 10,982,076 (-)EnsemblGRCh38hg38GRCh38
GRCh37111,006,532 - 11,042,133 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36110,929,120 - 10,946,845 (-)NCBINCBI36Build 36hg18NCBI36
Celera110,117,782 - 10,154,399 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef110,159,333 - 10,179,401 (-)NCBIHuRef
CHM1_1110,994,201 - 11,029,762 (-)NCBICHM1_1
T2T-CHM13v2.0110,485,794 - 10,523,301 (-)NCBIT2T-CHM13v2.0
C5h1orf127
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,358,333 - 164,393,758 (+)NCBIGRCr8
mRatBN7.25159,075,217 - 159,110,642 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,075,343 - 159,105,369 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05165,464,832 - 165,491,375 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,465,095 - 165,481,914 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,111,115 - 169,142,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,738,750 - 165,767,637 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5157,360,914 - 157,385,896 (+)NCBICelera
Cytogenetic Map5q36NCBI
CUNH1orf127
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554862,674,528 - 2,717,568 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554862,691,850 - 2,717,340 (+)NCBIChiLan1.0ChiLan1.0
C1H1orf127
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21217,261,898 - 217,279,817 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,893,401 - 215,925,754 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019,707,483 - 9,725,888 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1110,929,614 - 10,966,254 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl110,929,614 - 10,966,254 (-)Ensemblpanpan1.1panPan2
CUNH1orf127
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,224,624 - 34,249,004 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647449,570 - 73,710 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH1orf127
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120120,776,751 - 120,836,716 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20120,804,759 - 120,835,451 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605424,716,429 - 24,749,609 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf127
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248181,809,875 - 1,826,350 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248181,799,997 - 1,826,300 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gm572
146 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:129
Count of miRNA genes:127
Interacting mature miRNAs:129
Transcripts:ENSMUST00000105698
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
12738431Lfibq20_mliver fibrosis QTL 20 (mouse)4144699835148907426Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000105698   ⟹   ENSMUSP00000101323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,727,774 - 148,756,029 (+)Ensembl
GRCm38.p6 Ensembl4148,643,317 - 148,671,572 (+)Ensembl
RefSeq Acc Id: NM_001085505   ⟹   NP_001078974
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394148,727,774 - 148,756,029 (+)NCBI
GRCm384148,643,317 - 148,671,572 (+)NCBI
MGSCv374148,017,426 - 148,045,681 (+)RGD
Celera4150,904,993 - 150,933,325 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001368835   ⟹   NP_001355764
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394148,727,774 - 148,761,562 (+)NCBI
GRCm384148,643,317 - 148,677,105 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006538816   ⟹   XP_006538879
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394148,727,799 - 148,761,426 (+)NCBI
GRCm384148,643,343 - 148,676,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006538818   ⟹   XP_006538881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394148,751,641 - 148,761,426 (+)NCBI
GRCm384148,667,183 - 148,676,969 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164087   ⟹   XP_036019980
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394148,727,779 - 148,759,926 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036164088   ⟹   XP_036019981
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394148,727,779 - 148,759,926 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001078974   ⟸   NM_001085505
- Peptide Label: isoform 2 precursor
- UniProtKB: B1ARY8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538879   ⟸   XM_006538816
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006538881   ⟸   XM_006538818
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001355764   ⟸   NM_001368835
- Peptide Label: isoform 1 precursor
RefSeq Acc Id: ENSMUSP00000101323   ⟸   ENSMUST00000105698
RefSeq Acc Id: XP_036019980   ⟸   XM_036164087
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036019981   ⟸   XM_036164088
- Peptide Label: isoform X4
Protein Domains
DUF4556

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1ARY8-F1-model_v2 AlphaFold B1ARY8 1-399 view protein structure

Promoters
RGD ID:6885534
Promoter ID:EPDNEW_M6218
Type:multiple initiation site
Name:Gm572_1
Description:Mus musculus predicted gene 572 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384148,643,293 - 148,643,353EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685418 AgrOrtholog
Ensembl Genes ENSMUSG00000070577 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000105698 ENTREZGENE
  ENSMUST00000105698.3 UniProtKB/TrEMBL
InterPro DUF4556 UniProtKB/TrEMBL
  DUF4556 UniProtKB/TrEMBL
KEGG Report mmu:230909 UniProtKB/TrEMBL
MGD MGI:2685418 ENTREZGENE
NCBI Gene 230909 ENTREZGENE
PANTHER PTHR38653 UniProtKB/TrEMBL
  SI:CH211-129O18.4 UniProtKB/TrEMBL
Pfam DUF4556 UniProtKB/TrEMBL
PhenoGen Gm572 PhenoGen
UniProt B1ARY8 ENTREZGENE, UniProtKB/TrEMBL