Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Inflammation | | ISO | PLAA (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:11094054 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Inflammation | | ISO | PLAA (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:11094054 | |
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# | Reference Title | Reference Citation |
1. | Functional annotation of a full-length mouse cDNA collection. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
2. | Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. | Ko MS, etal., Development 2000 Apr;127(8):1737-49. |
3. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
4. | MGDs mouse GO annotations | MGD data from the GO Consortium |
5. | Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
6. | KEGG Annotation Import Pipeline | Pipeline to import KEGG annotations from KEGG into RGD |
7. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:2052621 | PMID:7665086 | PMID:8889548 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11544199 | PMID:11689694 | PMID:12477932 | PMID:12520002 | PMID:14610273 | PMID:14681479 |
PMID:15741177 | PMID:15782199 | PMID:16141072 | PMID:16141073 | PMID:17015433 | PMID:18799693 | PMID:19805280 | PMID:21070969 | PMID:21267068 | PMID:21873635 | PMID:22484374 | PMID:22846677 |
PMID:25737280 | PMID:28007986 | PMID:28190767 | PMID:28378742 | PMID:28413018 | PMID:29676259 | PMID:30457570 | PMID:32325033 | PMID:32554809 | PMID:35449600 | PMID:36278411 | PMID:36300783 |
PMID:36417873 |
Plaa (Mus musculus - house mouse) |
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PLAA (Homo sapiens - human) |
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Plaa (Rattus norvegicus - Norway rat) |
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Plaa (Chinchilla lanigera - long-tailed chinchilla) |
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PLAA (Pan paniscus - bonobo/pygmy chimpanzee) |
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PLAA (Canis lupus familiaris - dog) |
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Plaa (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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PLAA (Sus scrofa - pig) |
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Plaa (Heterocephalus glaber - naked mole-rat) |
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Variants in Plaa
1341 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH136469 |
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AW208417 |
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AI536418 |
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D4Ertd618e |
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Plaa |
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RefSeq Transcripts | NM_001424835 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001424836 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001424837 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001424838 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001424839 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_172695 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AK019070 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK075934 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK081641 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK085027 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK153616 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK153651 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK162534 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK166122 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK186154 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK209141 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL732597 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC139355 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC139356 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC139773 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CA490654 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466527 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DV646766 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
M57958 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000107107 ⟹ ENSMUSP00000102724 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000127656 ⟹ ENSMUSP00000116530 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000129748 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000135696 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000136669 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000146118 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_001424835 ⟹ NP_001411764 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001424836 ⟹ NP_001411765 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001424837 ⟹ NP_001411766 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001424838 ⟹ NP_001411767 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001424839 ⟹ NP_001411768 | ||||||||
RefSeq Status: | VALIDATED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_172695 ⟹ NP_766283 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001411764 | (Get FASTA) | NCBI Sequence Viewer |
NP_001411765 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001411766 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001411767 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001411768 | (Get FASTA) | NCBI Sequence Viewer | |
NP_766283 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAA39943 | (Get FASTA) | NCBI Sequence Viewer |
AAI39356 | (Get FASTA) | NCBI Sequence Viewer | |
AAI39357 | (Get FASTA) | NCBI Sequence Viewer | |
AAI39774 | (Get FASTA) | NCBI Sequence Viewer | |
BAC36064 | (Get FASTA) | NCBI Sequence Viewer | |
EDL30936 | (Get FASTA) | NCBI Sequence Viewer | |
EDL30937 | (Get FASTA) | NCBI Sequence Viewer | |
EDL30938 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000102724 | ||
ENSMUSP00000102724.3 | |||
ENSMUSP00000116530.2 | |||
GenBank Protein | P27612 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_766283 ⟸ NM_172695 |
- Peptide Label: | isoform 1 |
- UniProtKB: | A4QPD6 (UniProtKB/Swiss-Prot), Q8C6C4 (UniProtKB/Swiss-Prot), P27612 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000116530 ⟸ ENSMUST00000127656 |
RefSeq Acc Id: | ENSMUSP00000102724 ⟸ ENSMUST00000107107 |
RefSeq Acc Id: | NP_001411768 ⟸ NM_001424839 |
- Peptide Label: | isoform 6 |
RefSeq Acc Id: | NP_001411767 ⟸ NM_001424838 |
- Peptide Label: | isoform 5 |
RefSeq Acc Id: | NP_001411766 ⟸ NM_001424837 |
- Peptide Label: | isoform 4 |
RefSeq Acc Id: | NP_001411765 ⟸ NM_001424836 |
- Peptide Label: | isoform 3 |
RefSeq Acc Id: | NP_001411764 ⟸ NM_001424835 |
- Peptide Label: | isoform 2 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P27612-F1-model_v2 | AlphaFold | P27612 | 1-794 | view protein structure |
RGD ID: | 6835865 | ||||||||
Promoter ID: | MM_KWN:38476 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen | ||||||||
Transcripts: | ENSMUST00000030312, NM_172695, OTTMUST00000017873, UC008TSE.1 | ||||||||
Position: |
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RGD ID: | 6883858 | ||||||||
Promoter ID: | EPDNEW_M5377 | ||||||||
Type: | initiation region | ||||||||
Name: | Plaa_1 | ||||||||
Description: | Mus musculus phospholipase A2, activating protein , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:104810 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000028577 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000107107 | ENTREZGENE |
ENSMUST00000107107.9 | UniProtKB/Swiss-Prot | |
ENSMUST00000127656.3 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.25.10.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
2.130.10.10 | UniProtKB/Swiss-Prot | |
3.10.20.870 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | ARM-like | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PFU | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PFU_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PUL_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
WD40/YVTN_repeat-like_dom_sf | UniProtKB/Swiss-Prot | |
WD40_repeat | UniProtKB/Swiss-Prot | |
WD40_repeat_dom_sf | UniProtKB/Swiss-Prot | |
KEGG Report | mmu:18786 | UniProtKB/Swiss-Prot |
MGD | MGI:104810 | ENTREZGENE |
NCBI Gene | 18786 | ENTREZGENE |
PANTHER | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN | UniProtKB/Swiss-Prot |
PHOSPHOLIPASE A-2-ACTIVATING PROTEIN | UniProtKB/Swiss-Prot | |
PHOSPHOLIPASE A-2-ACTIVATING PROTEIN | UniProtKB/TrEMBL | |
PHOSPHOLIPASE A-2-ACTIVATING PROTEIN | UniProtKB/TrEMBL | |
Pfam | PFU | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PUL | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
WD40 | UniProtKB/Swiss-Prot | |
PhenoGen | Plaa | PhenoGen |
PROSITE | PFU | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PUL | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
WD_REPEATS_2 | UniProtKB/Swiss-Prot | |
WD_REPEATS_REGION | UniProtKB/Swiss-Prot | |
SMART | WD40 | UniProtKB/Swiss-Prot |
Superfamily-SCOP | SSF50978 | UniProtKB/Swiss-Prot |
UniProt | A4QPD6 | ENTREZGENE |
F7D1R5_MOUSE | UniProtKB/TrEMBL | |
P27612 | ENTREZGENE, UniProtKB/Swiss-Prot | |
Q8C6C4 | ENTREZGENE | |
UniProt Secondary | A4QPD6 | UniProtKB/Swiss-Prot |
Q8C6C4 | UniProtKB/Swiss-Prot |