Plaa (phospholipase A2, activating protein) - Rat Genome Database

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Gene: Plaa (phospholipase A2, activating protein) Mus musculus
Analyze
Symbol: Plaa
Name: phospholipase A2, activating protein
RGD ID: 732623
MGI Page MGI
Description: Enables phospholipase A2 activator activity. Involved in several processes, including negative regulation of protein K63-linked ubiquitination; positive regulation of dendrite extension; and ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Acts upstream of or within inflammatory response. Located in cytoplasm; nucleus; and synapse. Orthologous to human PLAA (phospholipase A2 activating protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410007N06; AI536418; AU018445; AW208417; D4Ertd618; D4Ertd618e; phospholipase A-2-activating protein; PLA2P; PLAP; Ufd3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39494,453,371 - 94,491,410 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl494,455,751 - 94,491,481 (-)EnsemblGRCm39 Ensembl
GRCm38494,565,139 - 94,603,247 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl494,567,514 - 94,603,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv37494,231,830 - 94,269,938 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36494,061,188 - 94,095,196 (-)NCBIMGSCv36mm8
Celera492,974,316 - 93,012,476 (-)NCBICelera
Cytogenetic Map4C5NCBI
cM Map443.34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-schisandrin B  (ISO)
(S)-nicotine  (EXP)
1,2-dichloroethane  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-tribromophenol  (ISO)
2,6-dinitrotoluene  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
aflatoxin B1  (ISO)
amiodarone  (ISO)
ammonium chloride  (ISO)
arachidonic acid  (EXP)
benzo[a]pyrene  (EXP)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
cadmium dichloride  (ISO)
calcium silicate  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
cisplatin  (EXP)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
epoxiconazole  (EXP)
ethanol  (EXP)
flutamide  (ISO)
hydrogen sulfide  (EXP)
iron atom  (ISO)
iron(0)  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (EXP)
methylmercury chloride  (ISO)
N-ethyl-N-nitrosourea  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nicotine  (EXP)
nimesulide  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
pentachlorophenol  (EXP)
phenobarbital  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
resveratrol  (ISO)
Salinomycin  (ISO)
sarin  (ISO)
sodium arsenite  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP)
trichloroethene  (ISO)
troglitazone  (EXP)
valdecoxib  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2052621   PMID:7665086   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11544199   PMID:11689694   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479  
PMID:15741177   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17015433   PMID:18799693   PMID:19805280   PMID:21070969   PMID:21267068   PMID:21873635   PMID:22484374   PMID:22846677  
PMID:25737280   PMID:28007986   PMID:28190767   PMID:28378742   PMID:28413018   PMID:29676259   PMID:30457570   PMID:32325033   PMID:32554809   PMID:35449600   PMID:36278411   PMID:36300783  
PMID:36417873  


Genomics

Comparative Map Data
Plaa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39494,453,371 - 94,491,410 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl494,455,751 - 94,491,481 (-)EnsemblGRCm39 Ensembl
GRCm38494,565,139 - 94,603,247 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl494,567,514 - 94,603,244 (-)EnsemblGRCm38mm10GRCm38
MGSCv37494,231,830 - 94,269,938 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36494,061,188 - 94,095,196 (-)NCBIMGSCv36mm8
Celera492,974,316 - 93,012,476 (-)NCBICelera
Cytogenetic Map4C5NCBI
cM Map443.34NCBI
PLAA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38926,903,372 - 26,947,242 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl926,903,372 - 26,947,242 (-)EnsemblGRCh38hg38GRCh38
GRCh37926,903,370 - 26,947,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36926,894,518 - 26,937,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 34926,894,517 - 26,925,207NCBI
Celera926,831,534 - 26,875,621 (-)NCBICelera
Cytogenetic Map9p21.2NCBI
HuRef926,856,258 - 26,900,343 (-)NCBIHuRef
CHM1_1926,903,156 - 26,947,247 (-)NCBICHM1_1
T2T-CHM13v2.0926,913,987 - 26,957,845 (-)NCBIT2T-CHM13v2.0
Plaa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85114,544,327 - 114,576,023 (-)NCBIGRCr8
mRatBN7.25109,428,600 - 109,460,373 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5109,428,265 - 109,460,282 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5112,008,911 - 112,038,934 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05113,734,700 - 113,764,723 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05113,796,931 - 113,826,954 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05113,548,913 - 113,578,928 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5113,548,913 - 113,578,928 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05117,491,921 - 117,523,644 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45114,869,341 - 114,899,356 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15114,874,675 - 114,904,441 (-)NCBI
Celera5108,057,280 - 108,087,304 (-)NCBICelera
Cytogenetic Map5q33NCBI
Plaa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554727,879,196 - 7,919,834 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554727,879,196 - 7,915,040 (+)NCBIChiLan1.0ChiLan1.0
PLAA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21197,594,820 - 97,639,872 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1997,603,602 - 97,645,817 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0926,749,607 - 26,793,580 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1927,357,357 - 27,401,080 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl927,357,437 - 27,401,103 (-)Ensemblpanpan1.1panPan2
PLAA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11145,121,423 - 45,159,093 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1145,121,588 - 45,159,098 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1143,796,828 - 43,834,515 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01146,066,215 - 46,103,907 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1146,066,215 - 46,103,981 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11144,723,113 - 44,761,001 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01144,613,092 - 44,650,799 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01145,359,820 - 45,397,506 (-)NCBIUU_Cfam_GSD_1.0
Plaa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947159,970,040 - 160,003,099 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366112,665,370 - 2,700,538 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366112,665,294 - 2,698,372 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1196,176,456 - 196,219,834 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11196,176,004 - 196,219,614 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21218,624,039 - 218,668,148 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Plaa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473631,127,955 - 31,169,739 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473631,127,955 - 31,169,680 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plaa
1341 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:422
Count of miRNA genes:324
Interacting mature miRNAs:349
Transcripts:ENSMUST00000107107, ENSMUST00000127656, ENSMUST00000129748, ENSMUST00000135696, ENSMUST00000136669, ENSMUST00000146118
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
11532700Sluc43d_msusceptibility to lung cancer 43d (mouse)474444699108444983Mouse
11532702Sluc43f_msusceptibility to lung cancer 43f (mouse)474444699108444983Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined88982069140468203Mouse
13824982Svwq1_mseminal vesicle weight QTL 1 (mouse)489888237118857197Mouse
4141900Skts-fp1_mskin tumor susceptibility in FVB and PWK 1 (mouse)Not determined453550839124055180Mouse
27095938Ulnl6_mulna length 6, 10 week (mouse)46671823798588237Mouse
27226770Tibl11_mtibia length 11, 10 week (mouse)488518237108357197Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined88982069140468203Mouse
27226746Metcl8_mmetatarsal-calcaneal length 8, 10 week (mouse)487518237107157197Mouse
27095927Pglq7_mpelvic girdle length QTL 7, 10 week (mouse)488118237108357197Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
11532714Sluc43_msusceptibility to lung cancer 43 (mouse)446642108123127211Mouse
12904933Edlmmq3_mextensor digitorum longus muscle mass QTL 3 (mouse)481213991115213991Mouse
1300966Pabr2_mplasma apolipoprotein B (human) regulator 2 (mouse)Not determined446332646105801860Mouse
1301597Anxty_manxiety (mouse)Not determined474137574128009280Mouse
27095905Scvln3_msacral vertebrae length 2, 5 week (mouse)455600000128993793Mouse
26884431Zlq8_mzygomatic length QTL 8, 16 week (mouse)474718237108357197Mouse
1301739Pitm2_mprion incubation time 2 (mouse)Not determined471982069105982216Mouse
1300918Stheal4_msoft tissue heal 4 (mouse)Not determined489969627123969747Mouse
11532704Sluc43a_msusceptibility to lung cancer 43a (mouse)474444699108444983Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
12904002Opfaq9_mopen field activity QTL 9 (mouse)492975790126975790Mouse
27095900Scvln9_msacral vertebrae length 2, 10 week (mouse)468018237107157197Mouse
10412193Plep_mplasma lepin levels (mouse)Not determined474444699108444983Mouse
11532703Sluc43g_msusceptibility to lung cancer 43g (mouse)474444699108444983Mouse
11039506Ltpr4b_mLeishmania tropica response 4b (mouse)479365751113365867Mouse
1302204Spm1_msplenomegaly modifier (mouse)Not determined482244395116244582Mouse
1357726Lnopy1_mlens opacity 1 (mouse)Not determined485428838119429037Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138342753Mouse
11532705Sluc43b_msusceptibility to lung cancer 43b (mouse)474444699108444983Mouse
1357561Mbsyd_mmetabolic syndrome (mouse)Not determined466888445100888588Mouse
11532706Sluc43c_msusceptibility to lung cancer 43c (mouse)474444699108444983Mouse
1558948Ath8_matherosclerosis 8 (mouse)Not determined445658442105156995Mouse
1300601Tlsr1_mthymic lymphoma suppressor region 1 (mouse)Not determined48860115894957775Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)488982069140468203Mouse
27095934Ulnl2_mulna length 2, 5 week (mouse)45770000094788237Mouse
11039504Ltpr4a_mLeishmania tropica response 4a (mouse)479365751113365867Mouse
11039505Ltpr4c_mLeishmania tropica response 4c (mouse)479365751113365867Mouse
11039517Ltpr4_mLeishmania tropica response 4 (mouse)479365751113365867Mouse
1301556Cd4vts1_mCD4 virgin T cell subset 1 (mouse)Not determined485428838119429037Mouse
11532708Sluc43i_msusceptibility to lung cancer 43i (mouse)474444699108444983Mouse
27226801Feml6_mfemur length 6, 5 week (mouse)487518237103257197Mouse
1357870Pfat1_mpredicted fat percentage 1 (mouse)Not determined46361952697619685Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined88982069140468203Mouse
27226760Feml19_mfemur length 19, 16 week (mouse)490888237108457197Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
26884434Zlq1_mzygomatic length QTL 1, 5 week (mouse)453700000103257197Mouse
1302031Bulb1_mbulb size 1 (mouse)Not determined474033887108034029Mouse
1301118Bbaa23_mB.burgdorferi-associated arthritis 23 (mouse)Not determined485781167119781279Mouse
27226739Metcl14_mmetatarsal-calcaneal length 14, 16 week (mouse)487518237108357197Mouse
15039368Nmrs19_mNAFLD-associated magnetic resonance shift 19 (mouse)490882780124882780Mouse
27226782Tibl2_mtibia length 2, 5 week (mouse)490888237111257197Mouse
1301757Tlsr4_mthymic lymphoma suppressor region 4 (mouse)Not determined466757130100757258Mouse
27095924Pglq2_mpelvic girdle length QTL 2, 5 week (mouse)469118237130727311Mouse
27095921Pglq12_mpelvic girdle length QTL 12, 16 week (mouse)483118237108357197Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
12879903Berr8_mberghei resistance locus 8 (mouse)46422246098222460Mouse
11532707Sluc43h_msusceptibility to lung cancer 43h (mouse)474444699108444983Mouse
27226787Feml14_mfemur length 14, 10 week (mouse)484918237107157197Mouse
27226716Metcl2_mmetatarsal-calcaneal length 2, 5 week (mouse)488118237118557197Mouse
27095939Ulnl9_mulna length 9, 16 week (mouse)465318237118857197Mouse
11532701Sluc43e_msusceptibility to lung cancer 43e (mouse)474444699108444983Mouse
1301545Gauc_mglucose area under curve (mouse)Not determined476763107110763305Mouse
1300697Sle2_msystemic lupus erythmatosus susceptibility 2 (mouse)Not determined477957579111957775Mouse
27226766Tibl17_mtibia length 17, 16 week (mouse)488518237108457197Mouse
1302057Pgia27_mproteoglycan induced arthritis 27 (mouse)Not determined470067227104067464Mouse
1302044Nss1_mNOD Sjogren's syndrome 1 (mouse)Not determined471982069105982216Mouse
26884435Zlq4_mzygomatic length QTL 4, 10 week (mouse)485118237104957197Mouse
12880404Embq1_memotional behavior QTL 1 (mouse)46575720395921546Mouse
27095917Scvln14_msacral vertebrae length 2, 16 week (mouse)468018237130277062Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301867Idd11_minsulin dependent diabetes susceptibility 11 (mouse)Not determined483604870117605006Mouse
11532738Abd1_mautoimmune biliary disease 1 (mouse)488982069116271120Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
12879897Berr4_mberghei resistance locus 4 (mouse)471982069105982216Mouse
13824979Epid1_mepididymis and vas deferens weight 1 (mouse)48988823799857197Mouse
13506251Cytrq1_mcytokine response QTL 1 (mouse)46571808699718086Mouse
1301930Papg1_mpulmonary adenoma progression 1 (mouse)Not determined485781167119781279Mouse
26884406Huml3_mhumerus length 3, 10 week (mouse)475618237100157197Mouse
11553870Cmmm_mcarcinoma modifier of MSM (mouse)490590668124590781Mouse

Markers in Region
RH136469  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38494,569,316 - 94,569,505UniSTSGRCm38
MGSCv37494,236,007 - 94,236,196UniSTSGRCm37
Celera492,978,497 - 92,978,686UniSTS
Cytogenetic Map4C5UniSTS
cM Map444.5UniSTS
AW208417  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38494,569,508 - 94,569,636UniSTSGRCm38
MGSCv37494,236,199 - 94,236,327UniSTSGRCm37
Celera492,978,689 - 92,978,817UniSTS
Cytogenetic Map4C5UniSTS
cM Map444.5UniSTS
Whitehead/MRC_RH41275.96UniSTS
AI536418  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38494,567,401 - 94,567,499UniSTSGRCm38
MGSCv37494,234,092 - 94,234,190UniSTSGRCm37
Celera492,976,582 - 92,976,680UniSTS
Cytogenetic Map4C5UniSTS
cM Map444.5UniSTS
Whitehead/MRC_RH41277.48UniSTS
D4Ertd618e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38494,569,179 - 94,569,428UniSTSGRCm38
MGSCv37494,235,870 - 94,236,119UniSTSGRCm37
Celera492,978,360 - 92,978,609UniSTS
Cytogenetic Map4C5UniSTS
cM Map444.5UniSTS
Plaa  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4C5UniSTS
cM Map444.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001424835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001424839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK019070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA490654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV646766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M57958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000107107   ⟹   ENSMUSP00000102724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl494,457,404 - 94,491,481 (-)Ensembl
GRCm38.p6 Ensembl494,569,167 - 94,603,244 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127656   ⟹   ENSMUSP00000116530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl494,459,924 - 94,471,735 (-)Ensembl
GRCm38.p6 Ensembl494,571,687 - 94,583,498 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl494,455,751 - 94,464,625 (-)Ensembl
GRCm38.p6 Ensembl494,567,514 - 94,576,388 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl494,462,098 - 94,471,714 (-)Ensembl
GRCm38.p6 Ensembl494,573,861 - 94,583,477 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136669
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl494,473,997 - 94,491,372 (-)Ensembl
GRCm38.p6 Ensembl494,585,760 - 94,603,135 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl494,477,924 - 94,491,418 (-)Ensembl
GRCm38.p6 Ensembl494,589,687 - 94,603,181 (-)Ensembl
RefSeq Acc Id: NM_001424835   ⟹   NP_001411764
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39494,453,371 - 94,491,410 (-)NCBI
RefSeq Acc Id: NM_001424836   ⟹   NP_001411765
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39494,453,371 - 94,491,410 (-)NCBI
RefSeq Acc Id: NM_001424837   ⟹   NP_001411766
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39494,453,371 - 94,491,410 (-)NCBI
RefSeq Acc Id: NM_001424838   ⟹   NP_001411767
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39494,453,371 - 94,491,410 (-)NCBI
RefSeq Acc Id: NM_001424839   ⟹   NP_001411768
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39494,453,371 - 94,491,410 (-)NCBI
RefSeq Acc Id: NM_172695   ⟹   NP_766283
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39494,453,371 - 94,491,410 (-)NCBI
GRCm38494,565,139 - 94,603,247 (-)ENTREZGENE
MGSCv37494,231,830 - 94,269,938 (-)RGD
Celera492,974,316 - 93,012,476 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_766283   ⟸   NM_172695
- Peptide Label: isoform 1
- UniProtKB: A4QPD6 (UniProtKB/Swiss-Prot),   Q8C6C4 (UniProtKB/Swiss-Prot),   P27612 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000116530   ⟸   ENSMUST00000127656
RefSeq Acc Id: ENSMUSP00000102724   ⟸   ENSMUST00000107107
RefSeq Acc Id: NP_001411768   ⟸   NM_001424839
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001411767   ⟸   NM_001424838
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001411766   ⟸   NM_001424837
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001411765   ⟸   NM_001424836
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001411764   ⟸   NM_001424835
- Peptide Label: isoform 2
Protein Domains
PFU   PUL

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P27612-F1-model_v2 AlphaFold P27612 1-794 view protein structure

Promoters
RGD ID:6835865
Promoter ID:MM_KWN:38476
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000030312,   NM_172695,   OTTMUST00000017873,   UC008TSE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36494,269,701 - 94,270,362 (-)MPROMDB
RGD ID:6883858
Promoter ID:EPDNEW_M5377
Type:initiation region
Name:Plaa_1
Description:Mus musculus phospholipase A2, activating protein , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38494,603,150 - 94,603,210EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104810 AgrOrtholog
Ensembl Genes ENSMUSG00000028577 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000107107 ENTREZGENE
  ENSMUST00000107107.9 UniProtKB/Swiss-Prot
  ENSMUST00000127656.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/Swiss-Prot
  3.10.20.870 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PFU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PFU_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PUL_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot
  WD40_repeat UniProtKB/Swiss-Prot
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:18786 UniProtKB/Swiss-Prot
MGD MGI:104810 ENTREZGENE
NCBI Gene 18786 ENTREZGENE
PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN UniProtKB/Swiss-Prot
  PHOSPHOLIPASE A-2-ACTIVATING PROTEIN UniProtKB/Swiss-Prot
  PHOSPHOLIPASE A-2-ACTIVATING PROTEIN UniProtKB/TrEMBL
  PHOSPHOLIPASE A-2-ACTIVATING PROTEIN UniProtKB/TrEMBL
Pfam PFU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40 UniProtKB/Swiss-Prot
PhenoGen Plaa PhenoGen
PROSITE PFU UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PUL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot
  WD_REPEATS_REGION UniProtKB/Swiss-Prot
SMART WD40 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot
UniProt A4QPD6 ENTREZGENE
  F7D1R5_MOUSE UniProtKB/TrEMBL
  P27612 ENTREZGENE, UniProtKB/Swiss-Prot
  Q8C6C4 ENTREZGENE
UniProt Secondary A4QPD6 UniProtKB/Swiss-Prot
  Q8C6C4 UniProtKB/Swiss-Prot