Man1c1 (mannosidase, alpha, class 1C, member 1) - Rat Genome Database

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Gene: Man1c1 (mannosidase, alpha, class 1C, member 1) Mus musculus
Analyze
Symbol: Man1c1
Name: mannosidase, alpha, class 1C, member 1
RGD ID: 1320141
MGI Page MGI
Description: Predicted to have calcium ion binding activity and mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in N-glycan processing; mannose metabolic process; and proteoglycan biosynthetic process. Predicted to localize to Golgi membrane and endoplasmic reticulum. Is expressed in several structures, including cerebellum; genitourinary system; gut; hemolymphoid system gland; and liver. Orthologous to human MAN1C1 (mannosidase alpha class 1C member 1); PARTICIPATES IN Endoplasmic Reticulum-associated degradation pathway; N-linked glycan biosynthetic pathway; INTERACTS WITH 1,2-dimethylhydrazine; choline; folic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI593348; mannosyl-oligosaccharide 1,2-alpha-mannosidase IC
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,289,001 - 134,432,987 (-)NCBIGRCm39mm39
GRCm39 Ensembl4134,289,001 - 134,431,601 (-)Ensembl
GRCm384134,561,690 - 134,704,290 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,561,690 - 134,704,290 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,117,605 - 134,260,205 (-)NCBIGRCm37mm9NCBIm37
MGSCv364133,833,766 - 133,976,366 (-)NCBImm8
Celera4132,744,361 - 132,888,173 (-)NCBICelera
Cytogenetic Map4D3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:14681479   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17121831   PMID:18799693   PMID:21267068   PMID:21677750  
PMID:21873635  


Genomics

Comparative Map Data
Man1c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394134,289,001 - 134,432,987 (-)NCBIGRCm39mm39
GRCm39 Ensembl4134,289,001 - 134,431,601 (-)Ensembl
GRCm384134,561,690 - 134,704,290 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,561,690 - 134,704,290 (-)EnsemblGRCm38mm10GRCm38
MGSCv374134,117,605 - 134,260,205 (-)NCBIGRCm37mm9NCBIm37
MGSCv364133,833,766 - 133,976,366 (-)NCBImm8
Celera4132,744,361 - 132,888,173 (-)NCBICelera
Cytogenetic Map4D3NCBI
MAN1C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl125,616,791 - 25,786,206 (+)EnsemblGRCh38hg38GRCh38
GRCh38125,616,791 - 25,786,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37125,943,282 - 26,110,941 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36125,816,546 - 25,983,845 (+)NCBINCBI36hg18NCBI36
Build 34125,628,104 - 25,795,084NCBI
Celera124,340,032 - 24,507,337 (+)NCBI
Cytogenetic Map1p36.11NCBI
HuRef124,197,844 - 24,350,677 (+)NCBIHuRef
HuRef124,360,764 - 24,367,428 (+)NCBIHuRef
CHM1_1126,057,325 - 26,224,752 (+)NCBICHM1_1
Man1c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.25146,774,282 - 146,913,257 (-)NCBI
Rnor_6.0 Ensembl5152,774,855 - 152,920,343 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.05152,775,031 - 152,920,130 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.05156,559,978 - 156,703,434 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45153,318,031 - 153,459,786 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15153,329,958 - 153,470,077 (-)NCBI
Celera5145,189,372 - 145,326,733 (-)NCBICelera
Cytogenetic Map5q36NCBI
Man1c1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554525,146,633 - 5,279,136 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554525,147,247 - 5,281,229 (+)NCBIChiLan1.0ChiLan1.0
MAN1C1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1125,943,770 - 26,112,866 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl125,943,949 - 26,110,456 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0124,877,014 - 25,044,891 (+)NCBIMhudiblu_PPA_v0panPan3
MAN1C1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1274,164,483 - 74,304,059 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl274,165,127 - 74,304,044 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha270,729,721 - 70,878,335 (-)NCBI
ROS_Cfam_1.0274,716,697 - 74,865,309 (-)NCBI
UMICH_Zoey_3.1271,539,915 - 71,688,722 (-)NCBI
UNSW_CanFamBas_1.0272,546,929 - 72,695,479 (-)NCBI
UU_Cfam_GSD_1.0273,551,081 - 73,699,727 (-)NCBI
Man1c1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505844,471,291 - 44,542,384 (+)NCBI
SpeTri2.0NW_00493647410,297,853 - 10,367,166 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAN1C1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl683,089,072 - 83,228,779 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1683,089,942 - 83,228,648 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2676,660,476 - 76,797,566 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAN1C1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120106,989,694 - 107,158,575 (-)NCBI
ChlSab1.1 Ensembl20106,987,360 - 107,158,437 (-)Ensembl
Vero_WHO_p1.0NW_0236660339,247,179 - 9,425,964 (+)NCBI
Man1c1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247649,745,726 - 9,876,968 (+)NCBI

Position Markers
D4Mit70  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,673,830 - 134,673,964UniSTSGRCm38
MGSCv374134,229,745 - 134,229,879UniSTSGRCm37
Celera4132,857,674 - 132,857,808UniSTS
Cytogenetic Map4D3UniSTS
cM Map462.3UniSTS
Whitehead Genetic462.3UniSTS
Whitehead/MRC_RH41778.95UniSTS
Whitehead_YAC4 UniSTS
Man1c1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv374134,121,763 - 134,121,899UniSTSGRCm37
Celera4132,748,515 - 132,748,651UniSTS
Cytogenetic Map4D3UniSTS
cM Map4 UniSTS
UniSTS:235059  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,562,072 - 134,562,364UniSTSGRCm38
MGSCv374134,117,987 - 134,118,279UniSTSGRCm37
Celera4132,744,743 - 132,745,035UniSTS
Cytogenetic Map4D3UniSTS
AI593348  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,563,117 - 134,563,198UniSTSGRCm38
MGSCv374134,119,032 - 134,119,113UniSTSGRCm37
Celera4132,745,788 - 132,745,869UniSTS
Cytogenetic Map4D3UniSTS
Whitehead/MRC_RH41776.59UniSTS
MAN1C1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384134,565,848 - 134,565,984UniSTSGRCm38
MGSCv374134,121,763 - 134,121,899UniSTSGRCm37
Celera4132,748,515 - 132,748,651UniSTS
Cytogenetic Map4D3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156183778Mouse
1357895Ctrcts_mcataract severity (mouse)Not determined445709925138615442Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155600000Mouse
25314312Syncl2_msynaptonemal complex length 2 (mouse)465800000146500000Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468100000150800000Mouse
4141549W10q10_mweight 10 weeks QTL 10 (mouse)Not determined89063832140740892Mouse
4141093W3q17_mweight 3 weeks QTL 17 (mouse)Not determined89063832140740892Mouse
4141623W6q13_mweight 6 weeks QTL 13 (mouse)Not determined89063832140740892Mouse
1357529Lvrq8_mliver weight QTL 8 (mouse)Not determined489063832140740892Mouse
39128212Lwq21_mliver weight QTL 21 (mouse)489063832140740892Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined489063832151570093Mouse
13208562Wght7_mweight 7 (mouse)491000000148000000Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined495069342150592401Mouse
12880433Fgf23lq1_mFGF23 serum level QTL 1 (mouse)4101300000135300000Mouse
15039377Bw45_mbody weight QTL 45 (mouse)4105812001139812001Mouse
15039378Adip30_madiposity 30 (mouse)4105812001139812001Mouse
15039382Ltgq7_mliver triglyceride QTL 7 (mouse)4105812001139812001Mouse
12910794Pwbwq8_mpost-weaning body weight QTL 8 (mouse)4105978113141706527Mouse
12910797Pwgrq4_mpre-weaning growth rate QTL 4 (mouse)4105978113141706527Mouse
12910808Pwbwq9_mpost-weaning body weight QTL 9 (mouse)4105978113141706527Mouse
12910813Pwbwq4_mpre-weaning body weight QTL 4 (mouse)4105978113141706527Mouse
1357800Tgq3_mtriglyceride QTL 3 (mouse)Not determined4107161300141161387Mouse
1300663Start2_mstartle response 2 (mouse)Not determined4107371164141371360Mouse
1300809Ccrs2_mcorpus callosum hemisphere surface size 2 (mouse)Not determined4107371164141371360Mouse
1300781Lith8_mlithogenic gene 8 (mouse)Not determined4107371164141371360Mouse
1301382Arvm2_mautoimmune renal vasculitis 2 (mouse)Not determined4107897771141897963Mouse
10755520Rbc1_mred blood cell count 1 (mouse)4108583899142583899Mouse
10755522Hgb1_mhemoglobin 1 (mouse)4108583899142583899Mouse
10755521Hct1_mhematocrit 1 (mouse)4108583899142583899Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111115258145115487Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111115258145115487Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112288593146288593Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112629696146629696Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112930596146930596Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116427367150427471Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117673830151673964Mouse
14746982Manh56_mmandible shape 56 (mouse)4118088606152088606Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4120137122154137225Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4120137122154137225Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120890537154890684Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120890537154890684Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120946694154946840Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120946694154946840Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121615338155615442Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121615338155615442Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121615338155615442Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4124100000144600000Mouse
4141065Shali2_msurvival time to hyperoxic acute lung injury 2 (mouse)Not determined124161300141845481Mouse
1300917Gasa1_mgastritis type A susceptibility locus 1 (mouse)Not determined4124161300142711450Mouse
1302149Tlsr2_mthymic lymphoma suppressor region 2 (mouse)Not determined4124371164142504390Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124371164150592401Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124826172156508116Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124893970156508116Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124893970156508116Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124893970156508116Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125504302156508116Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125504302156508116Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125504302156508116Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125562755156508116Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4128057656156508116Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4128057656156508116Mouse
1301793Tlsr3_mthymic lymphoma suppressor region 3 (mouse)Not determined4129572018137137225Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129572018151570093Mouse
4141154Nba1_mNew Zealand Black autoimmunity 1 (mouse)Not determined131923413141151964Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4132926037156508116Mouse
4142082Psds2_mpsoriasis-like skin disease severity 2 (mouse)Not determined4133427367137890684Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133427367150704994Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133592276156508116Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134569994156508116Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134569994156508116Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1874
Count of miRNA genes:573
Interacting mature miRNAs:701
Transcripts:ENSMUST00000038628, ENSMUST00000054096, ENSMUST00000176606
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_207237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006538757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036164067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK048880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL627122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038628   ⟹   ENSMUSP00000037949
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4134,561,690 - 134,704,290 (-)Ensembl
RefSeq Acc Id: ENSMUST00000054096   ⟹   ENSMUSP00000050979
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4134,561,690 - 134,704,290 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176606
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl4134,567,889 - 134,703,767 (-)Ensembl
RefSeq Acc Id: NM_207237   ⟹   NP_997120
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,289,001 - 134,431,601 (-)NCBI
GRCm384134,561,690 - 134,704,290 (-)ENTREZGENE
MGSCv374134,117,605 - 134,260,205 (-)RGD
Celera4132,744,361 - 132,888,173 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538757   ⟹   XP_006538820
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,289,001 - 134,378,903 (-)NCBI
GRCm384134,563,004 - 134,651,612 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036164067   ⟹   XP_036019960
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394134,289,001 - 134,432,987 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_997120   ⟸   NM_207237
- UniProtKB: Q6NXK9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538820   ⟸   XM_006538757
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000050979   ⟸   ENSMUST00000054096
RefSeq Acc Id: ENSMUSP00000037949   ⟸   ENSMUST00000038628
RefSeq Acc Id: XP_036019960   ⟸   XM_036164067
- Peptide Label: isoform X1

Promoters
RGD ID:6847820
Promoter ID:MM_ACW:36024
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:MAN1C1.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,120,071 - 134,120,571 (-)MPROMDB
RGD ID:6835620
Promoter ID:MM_KWN:40112
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:ENSMUST00000054096,   ENSMUST00000105864,   NM_207237,   UC008VFM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364134,259,196 - 134,260,662 (-)MPROMDB
RGD ID:6885036
Promoter ID:EPDNEW_M5969
Type:initiation region
Name:Man1c1_1
Description:Mus musculus mannosidase, alpha, class 1C, member 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384134,704,247 - 134,704,307EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2446214 AgrOrtholog
Ensembl Genes ENSMUSG00000037306 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000037949 UniProtKB/TrEMBL
  ENSMUSP00000050979 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038628 UniProtKB/TrEMBL
  ENSMUST00000054096 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.50.10.10 UniProtKB/TrEMBL
InterPro 6hp_glycosidase-like_sf UniProtKB/TrEMBL
  Glyco_hydro_47 UniProtKB/TrEMBL
  Seven-hairpin_glycosidases UniProtKB/TrEMBL
KEGG Report mmu:230815 UniProtKB/TrEMBL
MGD MGI:2446214 ENTREZGENE
NCBI Gene 230815 ENTREZGENE
Pfam Glyco_hydro_47 UniProtKB/TrEMBL
PhenoGen Man1c1 PhenoGen
PRINTS GLYHDRLASE47 UniProtKB/TrEMBL
Superfamily-SCOP Glyco_hydro_47 UniProtKB/TrEMBL
UniProt Q3UN34_MOUSE UniProtKB/TrEMBL
  Q6NXK9 ENTREZGENE, UniProtKB/TrEMBL
  Q8K2N2_MOUSE UniProtKB/TrEMBL