Pramel12 (PRAME like 12) - Rat Genome Database

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Gene: Pramel12 (PRAME like 12) Mus musculus
Analyze
No known orthologs.
Symbol: Pramel12
Name: PRAME like 12
RGD ID: 1616518
MGI Page MGI
Description: Predicted to be active in cytoplasm. Orthologous to several human genes including PRAMEF7 (PRAME family member 7) and PRAMEF8 (PRAME family member 8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732496O08Rik; AU023234; Pram; PRAME family member 8; Pramef8
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Pseudogenes: Gm18105   Gm18112  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394143,137,457 - 143,147,661 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4143,138,996 - 143,147,661 (+)EnsemblGRCm39 Ensembl
GRCm384143,412,155 - 143,421,091 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4143,412,426 - 143,421,091 (+)EnsemblGRCm38mm10GRCm38
MGSCv374143,002,329 - 143,010,990 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364142,679,113 - 142,687,774 (+)NCBIMGSCv36mm8
Celera4145,235,209 - 145,243,870 (+)NCBICelera
Cytogenetic Map4E1NCBI
cM Map477.65NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21677750   PMID:21873635   PMID:38355793  


Genomics

Variants

.
Variants in Pramel12
278 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2330
Count of miRNA genes:687
Interacting mature miRNAs:847
Transcripts:ENSMUST00000037356, ENSMUST00000059790, ENSMUST00000126398, ENSMUST00000132915, ENSMUST00000155157
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314312Syncl2_msynaptonemal complex length 2 (mouse)465718237146584457Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
4141001Tgq17_mtriglyceride QTL 17 (mouse)Not determined112523489146523489Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300839Dyscalc2_mdystrophic cardiac calcinosis 2 (mouse)Not determined4111009051145009280Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
10047132Albq19_malbuminuria QTL 19 (mouse)Not determined4112824389146824389Mouse
27226757Femd1_mfemur midshaft diameter 1, 5 week (mouse)4123993793144326570Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
15039385Mvlq3_mmacrovesicular liver lesion QTL 3 (mouse)4112182386146182386Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300743Skull6_mskull morphology 6 (mouse)Not determined4111009051145009280Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse

Markers in Region
AU023234  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384143,420,953 - 143,421,047UniSTSGRCm38
MGSCv374143,010,856 - 143,010,950UniSTSGRCm37
Celera4145,243,736 - 145,243,830UniSTS
Cytogenetic Map4E1UniSTS
Whitehead/MRC_RH41866.49UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000037356   ⟹   ENSMUSP00000041323
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4143,139,557 - 143,147,661 (+)Ensembl
GRCm38.p6 Ensembl4143,412,987 - 143,421,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000059790   ⟹   ENSMUSP00000058676
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4143,138,996 - 143,147,661 (+)Ensembl
GRCm38.p6 Ensembl4143,412,426 - 143,421,091 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126398
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4143,139,580 - 143,140,944 (+)Ensembl
GRCm38.p6 Ensembl4143,413,010 - 143,414,374 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132915   ⟹   ENSMUSP00000122707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4143,139,542 - 143,143,412 (+)Ensembl
GRCm38.p6 Ensembl4143,412,972 - 143,416,842 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155157   ⟹   ENSMUSP00000117878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4143,139,579 - 143,144,239 (+)Ensembl
GRCm38.p6 Ensembl4143,413,009 - 143,417,669 (+)Ensembl
RefSeq Acc Id: NM_001355724   ⟹   NP_001342653
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394143,138,996 - 143,147,661 (+)NCBI
GRCm384143,412,426 - 143,421,091 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172877   ⟹   NP_766465
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394143,138,996 - 143,147,661 (+)NCBI
GRCm384143,412,426 - 143,421,091 (+)NCBI
MGSCv374143,002,329 - 143,010,990 (+)RGD
Celera4145,235,209 - 145,243,870 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006538857   ⟹   XP_006538920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394143,137,457 - 143,147,661 (+)NCBI
GRCm384143,412,155 - 143,421,091 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766465   ⟸   NM_172877
- UniProtKB: Q8CE24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006538920   ⟸   XM_006538857
- Peptide Label: isoform X1
- UniProtKB: Q8CE24 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342653   ⟸   NM_001355724
- UniProtKB: Q8CE24 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000058676   ⟸   ENSMUST00000059790
RefSeq Acc Id: ENSMUSP00000122707   ⟸   ENSMUST00000132915
RefSeq Acc Id: ENSMUSP00000041323   ⟸   ENSMUST00000037356
RefSeq Acc Id: ENSMUSP00000117878   ⟸   ENSMUST00000155157

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CE24-F1-model_v2 AlphaFold Q8CE24 1-480 view protein structure

Promoters
RGD ID:6836290
Promoter ID:MM_KWN:40559
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000023541,   OTTMUST00000023543,   OTTMUST00000062781,   OTTMUST00000062782,   UC008VQE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364143,002,241 - 143,002,977 (+)MPROMDB
RGD ID:6885416
Promoter ID:EPDNEW_M6138
Type:initiation region
Name:Pramef8_1
Description:Mus musculus PRAME family member 8 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384143,413,008 - 143,413,068EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2140473 AgrOrtholog
Ensembl Genes ENSMUSG00000046862 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000037356 ENTREZGENE
  ENSMUST00000037356.8 UniProtKB/TrEMBL
  ENSMUST00000059790 ENTREZGENE
  ENSMUST00000059790.11 UniProtKB/TrEMBL
  ENSMUST00000132915.2 UniProtKB/TrEMBL
  ENSMUST00000155157.2 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro L_dom-like UniProtKB/TrEMBL
  PRAME_family UniProtKB/TrEMBL
MGD MGI:2140473 ENTREZGENE
NCBI Gene 242736 ENTREZGENE
PANTHER 4732496O08RIK PROTEIN UniProtKB/TrEMBL
  SIMILAR TO PREFERENTIALLY EXPRESSED ANTIGEN IN MELANOMA-LIKE 3 UniProtKB/TrEMBL
PhenoGen Pramel12 PhenoGen
PIRSF PRAME UniProtKB/TrEMBL
Superfamily-SCOP RNI-like UniProtKB/TrEMBL
UniProt A6PW90_MOUSE UniProtKB/TrEMBL
  A6PW91_MOUSE UniProtKB/TrEMBL
  Q8CE24 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-19 Pramel12  PRAME like 12  Pramef8  PRAME family member 8  Symbol and/or name change 5135510 APPROVED