Srm (spermidine synthase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Srm (spermidine synthase) Mus musculus
Analyze
Symbol: Srm
Name: spermidine synthase
RGD ID: 732807
MGI Page MGI
Description: Predicted to enable protein homodimerization activity and spermidine synthase activity. Acts upstream of or within cellular response to leukemia inhibitory factor. Predicted to be active in cytosol. Is expressed in several structures, including alimentary system; brain; ear; genitourinary system; and integumental system. Orthologous to human SRM (spermidine synthase).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AA407669; putrescine aminopropyltransferase; Sp; SpdST; SpdSy
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm5364   Gm7775  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,675,970 - 148,679,076 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,675,960 - 148,679,450 (+)EnsemblGRCm39 Ensembl
GRCm384148,591,513 - 148,594,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,591,503 - 148,594,993 (+)EnsemblGRCm38mm10GRCm38
MGSCv374147,965,622 - 147,968,728 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364147,435,313 - 147,438,419 (+)NCBIMGSCv36mm8
Celera4150,853,070 - 150,856,182 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-alpha-phellandrene  (ISO)
(-)-demecolcine  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
2,4,6-trinitrotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
afimoxifene  (ISO)
all-trans-retinoic acid  (EXP,ISO)
alpha-phellandrene  (ISO)
amiodarone  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
azoxystrobin  (ISO)
beauvericin  (ISO)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP,ISO)
clofibric acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
curcumin  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cypermethrin  (ISO)
DDE  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
Enterolactone  (ISO)
epoxiconazole  (EXP)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP)
genistein  (ISO)
glafenine  (ISO)
hydrogen peroxide  (ISO)
inulin  (EXP)
isoprenaline  (EXP)
ivermectin  (ISO)
L-ethionine  (ISO)
L-methionine  (EXP,ISO)
metformin  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methotrexate  (EXP,ISO)
methyl methanesulfonate  (ISO)
N-(6-acetamidohexyl)acetamide  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (ISO)
nickel atom  (ISO)
nimesulide  (ISO)
Nutlin-3  (ISO)
omeprazole  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
PhIP  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propiconazole  (EXP)
pyrazinecarboxamide  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
tamoxifen  (EXP)
tebufenpyrad  (ISO)
testosterone  (EXP)
tetrachloroethene  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichloroethene  (EXP,ISO)
triptonide  (EXP)
trovafloxacin  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Aminooxy analogues of spermidine as inhibitors of spermine synthase and substrates of hepatic polyamine acetylating activity. Eloranta TO, etal., J Biochem. 1990 Oct;108(4):593-8.
2. S-adenosylmethionine in liver health, injury, and cancer. Lu SC and Mato JM, Physiol Rev. 2012 Oct;92(4):1515-42. doi: 10.1152/physrev.00047.2011.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Assay for spermidine synthase activity by micellar electrokinetic chromatography with laser-induced fluorescence detection. Sano M and Nishino I, J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jan 1;845(1):80-3. Epub 2006 Aug 23.
10. A perspective of polyamine metabolism. Wallace HM, etal., Biochem J. 2003 Nov 15;376(Pt 1):1-14.
Additional References at PubMed
PMID:7803821   PMID:8343131   PMID:10349636   PMID:10513607   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18307411   PMID:18583422   PMID:19131104   PMID:20439489   PMID:21677750   PMID:21809077   PMID:21873635   PMID:24803591   PMID:28378742   PMID:33811915  


Genomics

Comparative Map Data
Srm
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394148,675,970 - 148,679,076 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4148,675,960 - 148,679,450 (+)EnsemblGRCm39 Ensembl
GRCm384148,591,513 - 148,594,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4148,591,503 - 148,594,993 (+)EnsemblGRCm38mm10GRCm38
MGSCv374147,965,622 - 147,968,728 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364147,435,313 - 147,438,419 (+)NCBIMGSCv36mm8
Celera4150,853,070 - 150,856,182 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map478.76NCBI
SRM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,054,589 - 11,060,018 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,054,584 - 11,060,020 (-)EnsemblGRCh38hg38GRCh38
GRCh37111,114,646 - 11,120,075 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,037,236 - 11,042,678 (-)NCBINCBI36Build 36hg18NCBI36
Build 34111,048,942 - 11,054,347NCBI
Celera110,226,954 - 10,232,396 (-)NCBICelera
Cytogenetic Map1p36.22NCBI
HuRef110,266,094 - 10,271,363 (-)NCBIHuRef
CHM1_1111,102,556 - 11,108,076 (-)NCBICHM1_1
T2T-CHM13v2.0110,596,153 - 10,601,582 (-)NCBIT2T-CHM13v2.0
Srm
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85164,309,002 - 164,312,203 (+)NCBIGRCr8
mRatBN7.25159,025,875 - 159,029,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5159,025,873 - 159,029,405 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5161,742,582 - 161,745,783 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05163,565,057 - 163,568,258 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05163,521,402 - 163,524,603 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05165,405,168 - 165,408,325 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5165,405,168 - 165,408,320 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl314,588,870 - 14,591,974 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05169,061,769 - 169,064,926 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45165,672,516 - 165,675,673 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15165,682,703 - 165,685,859 (+)NCBI
Celera5157,302,130 - 157,305,203 (+)NCBICelera
Cytogenetic Map5q36NCBI
Srm
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554862,631,586 - 2,634,527 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554862,631,579 - 2,634,779 (+)NCBIChiLan1.0ChiLan1.0
SRM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21217,164,133 - 217,169,647 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11215,810,098 - 215,815,576 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v019,817,765 - 9,823,244 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,038,452 - 11,043,186 (-)NCBIpanpan1.1PanPan1.1panPan2
SRM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1284,968,833 - 84,973,111 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl284,967,570 - 84,973,087 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha281,499,046 - 81,502,445 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0285,631,078 - 85,634,460 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl285,631,106 - 85,636,493 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1282,379,185 - 82,382,581 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0283,380,647 - 83,384,031 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0284,443,471 - 84,446,868 (+)NCBIUU_Cfam_GSD_1.0
Srm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505834,294,112 - 34,300,103 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936474118,000 - 124,963 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936474121,135 - 124,894 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,246,876 - 71,253,508 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,246,895 - 71,253,534 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,154,834 - 65,158,866 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120120,718,265 - 120,723,694 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20120,718,424 - 120,723,944 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605424,626,079 - 24,631,446 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srm
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248181,725,480 - 1,732,186 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248181,725,614 - 1,729,374 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Srm
9 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:614
Count of miRNA genes:417
Interacting mature miRNAs:468
Transcripts:ENSMUST00000006611, ENSMUST00000140129, ENSMUST00000152701
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
12738431Lfibq20_mliver fibrosis QTL 20 (mouse)4144699835148907426Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse

Markers in Region
RH124625  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38943,684,004 - 43,684,161UniSTSGRCm38
GRCm384148,594,365 - 148,594,537UniSTSGRCm38
MGSCv37943,492,087 - 43,492,244UniSTSGRCm37
MGSCv374147,968,474 - 147,968,646UniSTSGRCm37
Celera940,940,070 - 40,940,227UniSTS
Celera4150,855,928 - 150,856,100UniSTS
Cytogenetic Map9A5.1UniSTS
Cytogenetic Map4E2UniSTS
Srm  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map4E2UniSTS
cM Map478.76UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000006611   ⟹   ENSMUSP00000006611
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,675,960 - 148,679,076 (+)Ensembl
GRCm38.p6 Ensembl4148,591,503 - 148,594,619 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,678,351 - 148,679,450 (+)Ensembl
GRCm38.p6 Ensembl4148,593,894 - 148,594,993 (+)Ensembl
Ensembl Acc Id: ENSMUST00000152701
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4148,676,375 - 148,678,656 (+)Ensembl
GRCm38.p6 Ensembl4148,591,918 - 148,594,199 (+)Ensembl
RefSeq Acc Id: NM_009272   ⟹   NP_033298
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394148,675,970 - 148,679,076 (+)NCBI
GRCm384148,591,513 - 148,594,619 (+)ENTREZGENE
MGSCv374147,965,622 - 147,968,728 (+)RGD
Celera4150,853,070 - 150,856,182 (+)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_033298   ⟸   NM_009272
- UniProtKB: Q64674 (UniProtKB/Swiss-Prot),   Q543H0 (UniProtKB/TrEMBL),   Q8BSZ8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000006611   ⟸   ENSMUST00000006611
Protein Domains
PABS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q64674-F1-model_v2 AlphaFold Q64674 1-302 view protein structure

Promoters
RGD ID:6836449
Promoter ID:MM_KWN:40826
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000105703,   OTTMUST00000025629,   OTTMUST00000025630
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv364147,964,976 - 147,966,017 (+)MPROMDB
RGD ID:6885528
Promoter ID:EPDNEW_M6215
Type:initiation region
Name:Srm_1
Description:Mus musculus spermidine synthase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384148,591,512 - 148,591,572EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:102690 AgrOrtholog
Ensembl Genes ENSMUSG00000006442 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000006611 ENTREZGENE
  ENSMUST00000006611.9 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.140.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.150 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro PABS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PABS_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spermi_synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spermi_synthase_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spermidine_synt_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spermidine_synt_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20810 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:102690 ENTREZGENE
NCBI Gene 20810 ENTREZGENE
PANTHER PTHR11558 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPERMIDINE SYNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Spermine_synt_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Spermine_synth UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Srm PhenoGen
PIRSF Spermidine_synth UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PABS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PABS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3UJL7_MOUSE UniProtKB/TrEMBL
  Q543H0 ENTREZGENE, UniProtKB/TrEMBL
  Q64674 ENTREZGENE
  Q8BSZ8 ENTREZGENE, UniProtKB/TrEMBL
  SPEE_MOUSE UniProtKB/Swiss-Prot