Rps19-ps3 (ribosomal protein S19, pseudogene 3) - Rat Genome Database

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Gene: Rps19-ps3 (ribosomal protein S19, pseudogene 3) Mus musculus
Analyze
Symbol: Rps19-ps3
Name: ribosomal protein S19, pseudogene 3
RGD ID: 2301514
MGI Page MGI
Description: INTERACTS WITH tungsten
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: BE292558; Gm13143; Rps19-ps
Related Functional Gene: Rps19  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394147,906,234 - 147,906,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4147,906,234 - 147,906,659 (-)EnsemblGRCm39 Ensembl
GRCm384147,821,777 - 147,822,202 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4147,821,777 - 147,822,202 (-)EnsemblGRCm38mm10GRCm38
MGSCv374147,195,886 - 147,196,311 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364146,665,522 - 146,667,042 (-)NCBIMGSCv36mm8
Celera4150,072,252 - 150,072,677 (-)NCBICelera
Cytogenetic Map4E1NCBI
cM Map478.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
tungsten  (EXP)

References
Additional References at PubMed
PMID:14610273  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:56
Interacting mature miRNAs:57
Transcripts:ENSMUST00000116174
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
26884437Sklq13_mskull length QTL 13, 16 week (mouse)457700000155684457Mouse
26884445Sklq7_mskull length QTL 7, 10 week (mouse)468018237150884457Mouse
1301823Bmd7_mbone mineral density 7 (mouse)Not determined488982069151654550Mouse
13208562Wght7_mweight 7 (mouse)490888237148084457Mouse
1301815Sles2_msystemic lupus erythmatosus suppressor 2 (mouse)Not determined494957579150676858Mouse
4142493Femwf13_mfemur work to failure 13 (mouse)Not determined116154678150154782Mouse
1302078Sluc21_msusceptibility to lung cancer 21 (mouse)Not determined4117401141151401275Mouse
14746982Manh56_mmandible shape 56 (mouse)4117815917151815917Mouse
1302102Bis1_mbeta-carboline-induced seizures 1 (mouse)Not determined4119864433153864536Mouse
1301964Bw8q2_mbody weight at 8 weeks QTL 2 (mouse)Not determined4119864433153864536Mouse
13503348Bntq18_mbone traits QTL 18 (mouse)4120617848154617995Mouse
10412210Cypr6_mcytokine production 6 (mouse)Not determined4120617848154617995Mouse
4141180Ssic1_msusceptibility to small intestinal cancer 1 (mouse)Not determined120674005154674151Mouse
1300803Sluc6_msusceptibility to lung cancer 6 (mouse)Not determined4120674005154674151Mouse
10043985Stheal12_msoft tissue heal 12 (mouse)Not determined4121342649155342753Mouse
4142061Chlq16_mcirculating hormone level QTL 16 (mouse)Not determined4121342649155342753Mouse
1301452Elsgp1_melevated serum gp70 1 (mouse)Not determined4121342649155342753Mouse
1301525Lmb1_mlupus in MRL and B6 F2 cross (mouse)Not determined4124264957150676858Mouse
10755531Lymph3_mlymphocyte differential 3 (mouse)4124553483156860686Mouse
1300858Tafat_mtally ho associated mesenteric fat pad weight (mouse)Not determined4124621281156860686Mouse
4142139Adip12_madiposity 12 (mouse)Not determined4124621281156860686Mouse
1301982Pltiq1_mphospholipid transfer protein inducibility QTL 1 (mouse)Not determined4124621281156860686Mouse
1300933Cdcs9_mcytokine deficiency colitis susceptibility 9 (mouse)Not determined4125230872156860686Mouse
1300621Tpnr1_mthermal pain response 1 (mouse)Not determined4125230872156860686Mouse
10045620Heal22_mwound healing/regeneration 22 (mouse)Not determined4125230872156860686Mouse
11533916Mts1_mmammary tumor susceptibility 1 (mouse)4125289325156860686Mouse
10043996Gct5_mgranulosa cell tumorigenesis 5 (mouse)Not determined4127784226156860686Mouse
4142481Gct1_mgranulosa cell tumorigenesis 1 (mouse)Not determined4127784226156860686Mouse
1301584Lrdg2_mlight induced retinal degeneration 2 (mouse)Not determined4129465811151654550Mouse
1300874Gasa2_mgastritis type A susceptibility locus 2 (mouse)Not determined4133010494156860686Mouse
1301267Bcmd2_mB cell maturation defect 2 (mouse)Not determined4133154678150789451Mouse
4142077Ignpq2_mIgA nephropathy QTL 2 (mouse)Not determined4133676733156860686Mouse
1301108Scon2_msucrose consumption 2 (mouse)Not determined4134654451156860686Mouse
1300537Ap3q_malcohol preference 3 QTL (mouse)Not determined4134654451156860686Mouse
1300553Athsq1_matherosclerosis susceptibility QTL 1 (mouse)Not determined4137617848151654550Mouse
4141184Tb2r1_mTGF-beta2 responsiveness 1 (mouse)Not determined137674005150676858Mouse
1300780Cocrb16_mcocaine related behavior 16 (mouse)Not determined4138943725156860686Mouse
12738431Lfibq20_mliver fibrosis QTL 20 (mouse)4144699835148907426Mouse

Markers in Region
BE292558  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm384147,822,171 - 147,822,315UniSTSGRCm38
MGSCv374147,196,280 - 147,196,424UniSTSGRCm37
Celera4150,077,562 - 150,077,706UniSTS
Celera4150,072,646 - 150,072,790UniSTS
Cytogenetic Map4E2UniSTS
Whitehead/MRC_RH41899.17UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000116174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl4147,906,234 - 147,906,659 (-)Ensembl
GRCm38.p6 Ensembl4147,821,777 - 147,822,202 (-)Ensembl
RefSeq Acc Id: NR_033639
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm394147,906,234 - 147,906,659 (-)NCBI
GRCm384147,821,777 - 147,822,202 (-)ENTREZGENE
MGSCv374147,195,886 - 147,196,311 (-)RGD
Celera4150,072,252 - 150,072,677 (-)RGD
cM Map4 ENTREZGENE
Sequence:
Promoters
RGD ID:6885470
Promoter ID:EPDNEW_M6186
Type:single initiation site
Name:Rps19-ps3_1
Description:Mus musculus ribosomal protein S19, pseudogene 3 (Rps19-ps3),non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm384147,822,246 - 147,822,306EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000080059 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000116174 ENTREZGENE
MGD MGI:3701125 ENTREZGENE
NCBI Gene 277692 ENTREZGENE
PhenoGen Rps19-ps3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 Rps19-ps3  ribosomal protein S19, pseudogene 3  Gm13143  predicted gene 13143  Symbol and/or name change 5135510 APPROVED