E130114P18Rik (RIKEN cDNA E130114P18 gene)

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Gene: E130114P18Rik (RIKEN cDNA E130114P18 gene) Mus musculus

Analyze

Symbol:

E130114P18Rik

Name:

RIKEN cDNA E130114P18 gene

RGD ID:

2292393

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: protein-coding)

RefSeq Status:

PREDICTED

Previously known as:

RP23-313O9.1

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	97,456,112 - 97,472,828 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	97,456,370 - 97,666,315 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	97,567,875 - 97,584,591 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	97,568,133 - 97,778,078 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	97,234,566 - 97,251,282 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	97,060,157 - 97,270,066 (-)	NCBI		MGSCv36	mm8
Celera	4	95,928,995 - 95,945,877 (-)	NCBI		Celera
Cytogenetic Map	4	C5	NCBI
cM Map	4	45.43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal auditory brainstem response (IEA)

abnormal locomotor behavior (IEA)

hyperactivity (IEA)

References

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:38355793

Genomics

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	897
Count of miRNA genes:	314
Interacting mature miRNAs:	341
Transcripts:	ENSMUST00000107067, ENSMUST00000107068, ENSMUST00000126721, ENSMUST00000146447, ENSMUST00000147069, ENSMUST00000147925, ENSMUST00000148653, ENSMUST00000151946
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
27226782	Tibl2_m	tibia length 2, 5 week (mouse)					4	90888237	111257197	Mouse
13824979	Epid1_m	epididymis and vas deferens weight 1 (mouse)					4	89888237	99857197	Mouse
13824982	Svwq1_m	seminal vesicle weight QTL 1 (mouse)					4	89888237	118857197	Mouse
11532714	Sluc43_m	susceptibility to lung cancer 43 (mouse)					4	46642108	123127211	Mouse
13506251	Cytrq1_m	cytokine response QTL 1 (mouse)					4	65718086	99718086	Mouse
12904002	Opfaq9_m	open field activity QTL 9 (mouse)					4	92975790	126975790	Mouse
4141623	W6q13_m	weight 6 weeks QTL 13 (mouse)			Not determined			88982069	140468203	Mouse
1357726	Lnopy1_m	lens opacity 1 (mouse)			Not determined		4	85428838	119429037	Mouse
25314312	Syncl2_m	synaptonemal complex length 2 (mouse)					4	65718237	146584457	Mouse
11532708	Sluc43i_m	susceptibility to lung cancer 43i (mouse)					4	74444699	108444983	Mouse
11532707	Sluc43h_m	susceptibility to lung cancer 43h (mouse)					4	74444699	108444983	Mouse
27226770	Tibl11_m	tibia length 11, 10 week (mouse)					4	88518237	108357197	Mouse
11532706	Sluc43c_m	susceptibility to lung cancer 43c (mouse)					4	74444699	108444983	Mouse
11532705	Sluc43b_m	susceptibility to lung cancer 43b (mouse)					4	74444699	108444983	Mouse
1302044	Nss1_m	NOD Sjogren's syndrome 1 (mouse)			Not determined		4	71982069	105982216	Mouse
11532704	Sluc43a_m	susceptibility to lung cancer 43a (mouse)					4	74444699	108444983	Mouse
14696687	Gdq1_m	grooming duration QTL 1, males (mouse)					4	96888237	111857197	Mouse
27226766	Tibl17_m	tibia length 17, 16 week (mouse)					4	88518237	108457197	Mouse
27226760	Feml19_m	femur length 19, 16 week (mouse)					4	90888237	108457197	Mouse
4141093	W3q17_m	weight 3 weeks QTL 17 (mouse)			Not determined			88982069	140468203	Mouse
1302031	Bulb1_m	bulb size 1 (mouse)			Not determined		4	74033887	108034029	Mouse
27095939	Ulnl9_m	ulna length 9, 16 week (mouse)					4	65318237	118857197	Mouse
27095938	Ulnl6_m	ulna length 6, 10 week (mouse)					4	66718237	98588237	Mouse
12904933	Edlmmq3_m	extensor digitorum longus muscle mass QTL 3 (mouse)					4	81213991	115213991	Mouse
11567249	Elorr3_m	ethanol induced loss of righting response 3 (mouse)					4	3722677	156268235	Mouse
1301815	Sles2_m	systemic lupus erythmatosus suppressor 2 (mouse)			Not determined		4	94957579	150676858	Mouse
1300918	Stheal4_m	soft tissue heal 4 (mouse)			Not determined		4	89969627	123969747	Mouse
1301556	Cd4vts1_m	CD4 virgin T cell subset 1 (mouse)			Not determined		4	85428838	119429037	Mouse
1301823	Bmd7_m	bone mineral density 7 (mouse)			Not determined		4	88982069	151654550	Mouse
26884406	Huml3_m	humerus length 3, 10 week (mouse)					4	75618237	100157197	Mouse
27226801	Feml6_m	femur length 6, 5 week (mouse)					4	87518237	103257197	Mouse
1302204	Spm1_m	splenomegaly modifier (mouse)			Not determined		4	82244395	116244582	Mouse
11532703	Sluc43g_m	susceptibility to lung cancer 43g (mouse)					4	74444699	108444983	Mouse
11532702	Sluc43f_m	susceptibility to lung cancer 43f (mouse)					4	74444699	108444983	Mouse
11532701	Sluc43e_m	susceptibility to lung cancer 43e (mouse)					4	74444699	108444983	Mouse
1558948	Ath8_m	atherosclerosis 8 (mouse)			Not determined		4	45658442	105156995	Mouse
11532700	Sluc43d_m	susceptibility to lung cancer 43d (mouse)					4	74444699	108444983	Mouse
11039517	Ltpr4_m	Leishmania tropica response 4 (mouse)					4	79365751	113365867	Mouse
11039504	Ltpr4a_m	Leishmania tropica response 4a (mouse)					4	79365751	113365867	Mouse
1301930	Papg1_m	pulmonary adenoma progression 1 (mouse)			Not determined		4	85781167	119781279	Mouse
11039505	Ltpr4c_m	Leishmania tropica response 4c (mouse)					4	79365751	113365867	Mouse
1301545	Gauc_m	glucose area under curve (mouse)			Not determined		4	76763107	110763305	Mouse
1302057	Pgia27_m	proteoglycan induced arthritis 27 (mouse)			Not determined		4	70067227	104067464	Mouse
1357870	Pfat1_m	predicted fat percentage 1 (mouse)			Not determined		4	63619526	97619685	Mouse
11039506	Ltpr4b_m	Leishmania tropica response 4b (mouse)					4	79365751	113365867	Mouse
13208562	Wght7_m	weight 7 (mouse)					4	90888237	148084457	Mouse
27226787	Feml14_m	femur length 14, 10 week (mouse)					4	84918237	107157197	Mouse
10412193	Plep_m	plasma lepin levels (mouse)			Not determined		4	74444699	108444983	Mouse
27095900	Scvln9_m	sacral vertebrae length 2, 10 week (mouse)					4	68018237	107157197	Mouse
39128212	Lwq21_m	liver weight QTL 21 (mouse)					4	88982069	140468203	Mouse
27226716	Metcl2_m	metatarsal-calcaneal length 2, 5 week (mouse)					4	88118237	118557197	Mouse
26884445	Sklq7_m	skull length QTL 7, 10 week (mouse)					4	68018237	150884457	Mouse
26884434	Zlq1_m	zygomatic length QTL 1, 5 week (mouse)					4	53700000	103257197	Mouse
26884435	Zlq4_m	zygomatic length QTL 4, 10 week (mouse)					4	85118237	104957197	Mouse
1300697	Sle2_m	systemic lupus erythmatosus susceptibility 2 (mouse)			Not determined		4	77957579	111957775	Mouse
1301597	Anxty_m	anxiety (mouse)			Not determined		4	74137574	128009280	Mouse
26884437	Sklq13_m	skull length QTL 13, 16 week (mouse)					4	57700000	155684457	Mouse
4141549	W10q10_m	weight 10 weeks QTL 10 (mouse)			Not determined			88982069	140468203	Mouse
1357895	Ctrcts_m	cataract severity (mouse)			Not determined		4	45709925	138342753	Mouse
26884431	Zlq8_m	zygomatic length QTL 8, 16 week (mouse)					4	74718237	108357197	Mouse
12879903	Berr8_m	berghei resistance locus 8 (mouse)					4	64222460	98222460	Mouse
12879897	Berr4_m	berghei resistance locus 4 (mouse)					4	71982069	105982216	Mouse
4142047	Mvwf3_m	modifier of von Willebrand factor 3 (mouse)			Not determined			14010457	117072206	Mouse
1301233	Sbw2_m	splenomegaly-NZB x NZW 2 (mouse)			Not determined		4	94957579	128009280	Mouse
27226746	Metcl8_m	metatarsal-calcaneal length 8, 10 week (mouse)					4	87518237	107157197	Mouse
27095924	Pglq2_m	pelvic girdle length QTL 2, 5 week (mouse)					4	69118237	130727311	Mouse
27095927	Pglq7_m	pelvic girdle length QTL 7, 10 week (mouse)					4	88118237	108357197	Mouse
27226739	Metcl14_m	metatarsal-calcaneal length 14, 16 week (mouse)					4	87518237	108357197	Mouse
27095921	Pglq12_m	pelvic girdle length QTL 12, 16 week (mouse)					4	83118237	108357197	Mouse
1357561	Mbsyd_m	metabolic syndrome (mouse)			Not determined		4	66888445	100888588	Mouse
1301118	Bbaa23_m	B.burgdorferi-associated arthritis 23 (mouse)			Not determined		4	85781167	119781279	Mouse
15039368	Nmrs19_m	NAFLD-associated magnetic resonance shift 19 (mouse)					4	90882780	124882780	Mouse
11532738	Abd1_m	autoimmune biliary disease 1 (mouse)					4	88982069	116271120	Mouse
1301757	Tlsr4_m	thymic lymphoma suppressor region 4 (mouse)			Not determined		4	66757130	100757258	Mouse
1301731	Cafq2_m	caffeine metabolism QTL 2 (mouse)			Not determined		4	94732255	128732454	Mouse
27095917	Scvln14_m	sacral vertebrae length 2, 16 week (mouse)					4	68018237	130277062	Mouse
4141900	Skts-fp1_m	skin tumor susceptibility in FVB and PWK 1 (mouse)			Not determined		4	53550839	124055180	Mouse
1300966	Pabr2_m	plasma apolipoprotein B (human) regulator 2 (mouse)			Not determined		4	46332646	105801860	Mouse
1301739	Pitm2_m	prion incubation time 2 (mouse)			Not determined		4	71982069	105982216	Mouse
1301867	Idd11_m	insulin dependent diabetes susceptibility 11 (mouse)			Not determined		4	83604870	117605006	Mouse
27226724	Tibw2_m	tibia width 2, proximal, 10 week (mouse)					4	43000000	108357197	Mouse
26884449	Sklq2_m	skull length QTL 2, 5 week (mouse)					4	36700000	128993793	Mouse
27095905	Scvln3_m	sacral vertebrae length 2, 5 week (mouse)					4	55600000	128993793	Mouse
11553870	Cmmm_m	carcinoma modifier of MSM (mouse)					4	90590668	124590781	Mouse

Markers in Region

D4Mit290

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	4	97,654,214 - 97,654,334	UniSTS	GRCm38
MGSCv37	4	97,320,905 - 97,321,025	UniSTS	GRCm37
Celera	4	96,015,441 - 96,015,561	UniSTS
Cytogenetic Map	4	C6	UniSTS
Cytogenetic Map	4	C4-C6	UniSTS
cM Map	4	48.5	UniSTS
Whitehead Genetic	4	45.9	UniSTS
Whitehead/MRC_RH	4	1379.36	UniSTS
Whitehead_YAC	4		UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_015513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK053617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK082601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK086199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK086602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL772257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC048947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000107067 ⟹ ENSMUSP00000102682

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,456,370 - 97,472,844 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,568,133 - 97,584,607 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000107068 ⟹ ENSMUSP00000102683

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,456,370 - 97,472,866 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,568,133 - 97,584,629 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000126721

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,456,370 - 97,472,857 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,568,133 - 97,584,620 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000146447 ⟹ ENSMUSP00000121284

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,456,370 - 97,666,285 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,568,133 - 97,778,048 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000147069

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,567,502 - 97,666,315 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,679,265 - 97,778,078 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000147925

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,456,370 - 97,472,873 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,568,133 - 97,584,636 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000148653

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,456,370 - 97,472,833 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,568,133 - 97,584,596 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000151946

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,464,124 - 97,472,849 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,575,887 - 97,584,612 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000186369 ⟹ ENSMUSP00000140103

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	4	97,457,427 - 97,578,973 (-)	Ensembl
GRCm38.p6 Ensembl	4	97,569,190 - 97,690,736 (-)	Ensembl

RefSeq Acc Id:

NR_015513

RefSeq Status:

PREDICTED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	4	97,456,112 - 97,472,828 (-)	NCBI
GRCm38	4	97,567,875 - 97,584,591 (-)	ENTREZGENE
MGSCv37	4	97,234,566 - 97,251,282 (-)	RGD
Celera	4	95,928,995 - 95,945,877 (-)	RGD
cM Map	4		ENTREZGENE

Sequence:

show sequence

TCCCACTATGAGCCTGGAGTCTGAGCAGCCAGATGACACAGGAGGTTACCAGAAAATAACTATG
CAAGATGCCAAGATAGAGAGGCAATTAATAGTCCTACCCAGTTGTGATACCTTTCAACCATGGC
AATGACCAGCATGAAAATGGAGACCATCACAGAAATCCACAGCTGGACACAATGCAGACATCAA
CAGATCCTGGGTAGCCCTACCCCACAACTACGTCACAACTCCTGCATTTATGGCTCTGCAAACA
TCACAGAGAGGGGCTAGGAAGACTGTAAGAATGAAACACCAGAAGTTGGCTGTGAAACAGTCTT
TCCTAGAAATGCCTGCATAAGCAAAATTTGAACAATGGCAGTATCAGTAGACTTGTTGATGTGG
AAAGGAAAAACAACCTCACAGGGGCACATCTGTGGATAAGGCAACTGATGACTGCTGGGAATGG
GAGAGCTACCCTCTACCTGGGAGGAGCTCTCTATTTAGTTATCCAATACAAACAGTATCAATGA
AACTGTACATAAACAAAAAATAGAATGGACTCGGTAGGTTGTATTTGTGCATAAATATATGTAG
CAATAATAGTGGGACAAGAAGAGTTTGAGCAGTTTGAGAGTTGTGGCAACTTGGGAGAAAGTGC
TATAATTATATTTTAATTAAAATATGTAAAAATACATAGAAAAAATTCAATAAATTTTCTTTTG
TGAATAGGGCAAACGTTTTCATACTTTCTGAAATGGATCTAAACATGTTCCTGCATTTTACACC
ATGCATTTATGAAGAATGGTGGGTGCTCTTAGAGTTGATGTATAAAAATAAACATTGAACACTT
GGACAAACCTCCAAGATGTTCTGTGTCTTGCAATATCAAATAAGCAGTTAAGATTTAGGTCCTT
ATGTGAACACTAACAAGCATGTGTATGTTATTAGTTTAGTTTTTAATAAATTGTAAAATTGTAT
GTATAGTAGATAATTGCCTTAATTTTCTGTAATGTGTAATCAGTGAACATATACCTATTTTCTA
GACATACATATCAATAGTCATGTAAAAACTTTTCAGGTATGAAGTGGTTATGAGTGTAGAGTTT
AGGAAGCCTTGTTCTTGACTGTCCATGTGTAGATAATTAATATTTGTGGGTATAGGTGCTATTT
ATTCCTCATCTAACAAGTTTAAAGTTTGTTTTTAATAACAGTAAATAATGTGTTAACATAAAGT
TAGCATTACAGCTTT

hide sequence

Protein Sequences


GenBank Protein	BAC39629	(Get FASTA)	NCBI Sequence Viewer
	EDL30907	(Get FASTA)	NCBI Sequence Viewer
	EDL30908	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000102682.2
	ENSMUSP00000102683.3
	ENSMUSP00000121284.2
	ENSMUSP00000140103.2

Ensembl Acc Id:

ENSMUSP00000140103 ⟸ ENSMUST00000186369

Ensembl Acc Id:

ENSMUSP00000102683 ⟸ ENSMUST00000107068

Ensembl Acc Id:

ENSMUSP00000102682 ⟸ ENSMUST00000107067

Ensembl Acc Id:

ENSMUSP00000121284 ⟸ ENSMUST00000146447

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A087WQA2-F1-model_v2	AlphaFold	A0A087WQA2	1-101	view protein structure

Promoters

RGD ID:

6883902

Promoter ID:

EPDNEW_M5402

Type:

initiation region

Name:

E130114P18Rik_1

Description:

Mus musculus RIKEN cDNA E130114P18 gene , long non-coding RNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_M5403

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	4	97,584,590 - 97,584,650	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000048747	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000107067.8	UniProtKB/TrEMBL
	ENSMUST00000107068.9	UniProtKB/TrEMBL
	ENSMUST00000146447.8	UniProtKB/TrEMBL
	ENSMUST00000186369.2	UniProtKB/TrEMBL
MGD	MGI:2442873	ENTREZGENE
NCBI Gene	319865	ENTREZGENE
PhenoGen	E130114P18Rik	PhenoGen
RNAcentral	URS000075E279	RNACentral
UniProt	A0A087WQA2_MOUSE	UniProtKB/TrEMBL
	A2AK50_MOUSE	UniProtKB/TrEMBL
	A2AK51_MOUSE	UniProtKB/TrEMBL
	F6S0S7_MOUSE	UniProtKB/TrEMBL
	Q8C3D7_MOUSE	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Mammalian Phenotype